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XBB.1.5 sublineage with S:N540K emerged in Austria (107 Seqs) #1710

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FedeGueli opened this issue Mar 1, 2023 · 5 comments
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XBB.1.5 sublineage with S:N540K emerged in Austria (107 Seqs) #1710

FedeGueli opened this issue Mar 1, 2023 · 5 comments
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low priority For issues that are low priority for now monitor currently too small, watch for future developments XBB.1.5 Sublineage of XBB.1.5

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@FedeGueli
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Here i want to propose another sublineage of XBB.1.5 defined by a spike mutation, that was quite rare until emerged in XBB.1.5: S:N540K.

Defining mutations:
XBB.1.5> C4234T>A16953C>A16281G,S:N540K (T23182A)

Tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_19589_f41270.json?branchLabel=nuc%20mutations

Gisaid query : Spike_V445P,Spike_N540K

Country : Austria
Sequences: 42
EPI_ISL_16831782, EPI_ISL_16831803, EPI_ISL_16831945-16831946,
EPI_ISL_16857520, EPI_ISL_16858215, EPI_ISL_16858273,
EPI_ISL_16858314, EPI_ISL_16858331, EPI_ISL_16858334,
EPI_ISL_16874291, EPI_ISL_16875359, EPI_ISL_16907906,
EPI_ISL_16907920, EPI_ISL_16908039, EPI_ISL_16908133,
EPI_ISL_16942282, EPI_ISL_16942943, EPI_ISL_16943130,
EPI_ISL_16951420, EPI_ISL_16951428, EPI_ISL_16951601,
EPI_ISL_16951626, EPI_ISL_16951647, EPI_ISL_16951649,
EPI_ISL_16951672, EPI_ISL_17002255, EPI_ISL_17010622,
EPI_ISL_17011709, EPI_ISL_17011732, EPI_ISL_17017720-17017721,
EPI_ISL_17017751, EPI_ISL_17017775-17017776, EPI_ISL_17017790,
EPI_ISL_17017823, EPI_ISL_17017907, EPI_ISL_17018007,
EPI_ISL_17018053, EPI_ISL_17018119, EPI_ISL_17034033,
@thomasppeacock thomasppeacock added the XBB proposed sublineage of XBB label Mar 1, 2023
@FedeGueli FedeGueli changed the title XBB.1.5 sublineage with S:N540K emerged in Austria (42Seqs) XBB.1.5 sublineage with S:N540K emerged in Austria (47 Seqs) Mar 4, 2023
@FedeGueli
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FedeGueli commented Mar 4, 2023 •
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47 sequences as today all from Austria

@FedeGueli FedeGueli mentioned this issue Mar 4, 2023
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@FedeGueli FedeGueli changed the title XBB.1.5 sublineage with S:N540K emerged in Austria (47 Seqs) XBB.1.5 sublineage with S:N540K emerged in Austria (77 Seqs) Mar 8, 2023
@FedeGueli
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77 sequences as today. all from Austria.
41 of them are from Carinthia .

@FedeGueli FedeGueli changed the title XBB.1.5 sublineage with S:N540K emerged in Austria (77 Seqs) XBB.1.5 sublineage with S:N540K emerged in Austria (87 Seqs) Mar 13, 2023
@FedeGueli
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87 sequences . Still an austrian only lineage

@FedeGueli FedeGueli changed the title XBB.1.5 sublineage with S:N540K emerged in Austria (87 Seqs) XBB.1.5 sublineage with S:N540K emerged in Austria (96 Seqs) Mar 19, 2023
@thomasppeacock thomasppeacock added XBB.1.5 Sublineage of XBB.1.5 and removed XBB proposed sublineage of XBB labels Mar 24, 2023
@FedeGueli FedeGueli changed the title XBB.1.5 sublineage with S:N540K emerged in Austria (96 Seqs) XBB.1.5 sublineage with S:N540K emerged in Austria (107 Seqs) Mar 25, 2023
@FedeGueli
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107 seqs as today

@corneliusroemer corneliusroemer added low priority For issues that are low priority for now monitor currently too small, watch for future developments labels Mar 27, 2023
@InfrPopGen
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Thank you for proposing this lineage. As it has been showing relative growth disadvantages over the past three months (Austria, Europe, World), this can be closed for now. Please re-propose or request re-opening should this lineage show a marked resurgence.

@InfrPopGen InfrPopGen closed this as not planned Won't fix, can't repro, duplicate, stale Mar 31, 2023
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