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XBB.1.5 with S:P251S (134 seq., 8 countries) #1684

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agamedilab opened this issue Feb 22, 2023 · 7 comments
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XBB.1.5 with S:P251S (134 seq., 8 countries) #1684

agamedilab opened this issue Feb 22, 2023 · 7 comments
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designated XBB proposed sublineage of XBB
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EK.3

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@agamedilab
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agamedilab commented Feb 22, 2023 •
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Proposal for a sublineage of XBB.1.5
Earliest sequence: 24.12.2022 (USA)
Countries detected: USA, Irland, Scotland, England, Austria

Defining mutations:
S:P251S = C22313T

Gisaid query: A20118G, C22313T, G28079T

grafik
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_17593_663d70.json?label=id:node_7650674

EPI_ISL_16579224, EPI_ISL_16734149, EPI_ISL_16734176, EPI_ISL_16754452, EPI_ISL_16754582, EPI_ISL_16904571, EPI_ISL_16908137, EPI_ISL_16998382, EPI_ISL_16998386, EPI_ISL_16998387, EPI_ISL_16998388, EPI_ISL_16998389, EPI_ISL_16998390, EPI_ISL_16998391, EPI_ISL_16998392, EPI_ISL_16998393, EPI_ISL_16998394, EPI_ISL_16998398, EPI_ISL_16998399, EPI_ISL_16998400, EPI_ISL_16998401, EPI_ISL_16998402, EPI_ISL_16998408, EPI_ISL_16998409, EPI_ISL_16998419, EPI_ISL_16998426

OQ420254.1, OX427154.1, OX427437.1, OX427709.1, OX430833.1
@FedeGueli
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FedeGueli commented Feb 22, 2023 •
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I was just highlighting it in the XBB.1.5 spike diversity. tracked there since a while. #1510

@FedeGueli FedeGueli mentioned this issue Feb 22, 2023
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@thomasppeacock thomasppeacock added the XBB proposed sublineage of XBB label Feb 23, 2023
@agamedilab
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47 seq as of 01.03.23.

grafik
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_3c8a3_efdba0.json?c=country&label=id:node_7684955

@agamedilab agamedilab changed the title XBB.1.5 with S:P251S (38 seq., USA, Irland, Scotland, England, Austria) XBB.1.5 with S:P251S (47 seq., USA, Irland, Scotland, England, Austria) Mar 1, 2023
@agamedilab
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96 on usher as of 09.03.23.

grafik
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_8263_9cdcb0.json?c=gt-S_251&label=id:node_7705792

@agamedilab agamedilab changed the title XBB.1.5 with S:P251S (47 seq., USA, Irland, Scotland, England, Austria) XBB.1.5 with S:P251S (96 seq., 8 countries) Mar 9, 2023
@agamedilab
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134 as of 20.03.23.

grafik

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_3195a_809990.json?c=country&label=id:node_7770565

@agamedilab agamedilab changed the title XBB.1.5 with S:P251S (96 seq., 8 countries) XBB.1.5 with S:P251S (134 seq., 8 countries) Mar 20, 2023
@FedeGueli
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Designated EK.3 from cb29522

FedeGueli referenced this issue Mar 22, 2023
@corneliusroemer
Added lineage EK.3 (S:P251S) with 130 designations
cb29522
@agamedilab
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I would be very happy if a designated label and milestone could be added to the issue! Many thanks! @corneliusroemer @InfrPopGen

@corneliusroemer corneliusroemer added this to the EK.3 milestone Mar 24, 2023
@agamedilab
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many thanks! @corneliusroemer

@xz-keg xz-keg mentioned this issue Jul 18, 2023
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