diff --git a/lineage_notes.txt b/lineage_notes.txt index 4d2505bf..6411fb34 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1008,9 +1008,11 @@ CL.1.2 Alias of B.1.1.529.5.1.29.1.2, S:T883I CL.1.3 Alias of B.1.1.529.5.1.29.1.3, S:S71F BA.5.1.30 Alias of B.1.1.529.5.1.30, ORF6:D6G BA.5.1.31 Alias of B.1.1.529.5.1.31, found mainly in France and Denmark, from pango-designation issue #991 -BA.5.1.32 Alias of B.1.1.529.5.1.32 found mainly in Germany and China, from pango-designation issue #1488 -BA.5.1.33 Alias of B.1.1.529.5.1.33 S:V1264L -BA.5.1.33 Alias of B.1.1.529.5.1.34 Denmark, S:P1162S +BA.5.1.32 Alias of B.1.1.529.5.1.32, found mainly in Germany and China, from pango-designation issue #1488 +BA.5.1.33 Alias of B.1.1.529.5.1.33, S:V1264L +BA.5.1.34 Alias of B.1.1.529.5.1.34, Denmark, S:P1162S +BA.5.1.35 Alias of B.1.1.529.5.1.35, ORF1a:I1525M +EB.1 Alias of B.1.1.529.5.1.35.1, USA, S:R346T BA.5.2 Alias of B.1.1.529.5.2, mainly found in South Africa, England and USA, from pango-designation issue #551 BA.5.2.1 Alias of B.1.1.529.5.2.1, mainly found in South Africa, England and USA, from pango-designation issue #657 BF.1 Alias of B.1.1.529.5.2.1.1, mainly found in England, Denmark, Spain and Scotland, from pango-designation issue #618 diff --git a/lineages.csv b/lineages.csv index ee72cfea..77dc5480 100644 --- a/lineages.csv +++ b/lineages.csv @@ -1807848,7 +1807848,6 @@ Israel/SMC-7077952/2022,BA.5.1 Germany/NI-RKI-I-866788/2022,BA.5.1 Luxembourg/LNS4953174/2022,BA.5.1 Austria/CeMM30073/2022,BA.5.1 -Portugal/PT33947/2022,BA.5.1 Germany/NI-RKI-I-869468/2022,BA.5.1 Denmark/DCGC-532705/2022,BA.5.1 England/LSPA-3E60492/2022,BA.5.1 @@ -1808072,10 +1808071,8 @@ Brazil/SP-IB_158133/2022,BA.5.1 Luxembourg/LNS6033759/2022,BA.5.1 Mexico/CMX-INMEGEN-76-279/2022,BA.5.1.6 Belgium/rega-42560/2022,BA.5.1 -Portugal/PT37049/2022,BA.5.1 France/NAQ-HCL722002992801/2022,BA.5.1 Portugal/PT36318/2022,BA.5.1 -England/LSPA-3E41F96/2022,BA.5.1 Scotland/LSPA-3E54385/2022,BA.5.1 France/BRE-IPP37909/2022,BA.5.1 England/PHEP-YYFYKSR/2022,BA.5.1 @@ -1808142,7 +1808139,6 @@ USA/AZ-ASU78981/2022,BA.5.1 Israel/ICH-741229248/2022,BA.5.1 Belgium/UZA-UA-CV8522509219/2022,BA.5.1 Denmark/DCGC-521496/2022,BA.5.1 -Germany/NW-RKI-I-860470/2022,BA.5.1 Denmark/DCGC-534461/2022,BA.5.1 Spain/GA-CHUVI-34803521/2022,BA.5.1 Belgium/UMONS-P063182301/2022,BA.5.1 @@ -1808248,7 +1808244,6 @@ Israel/SMC-7077758/2022,BA.5.1 Singapore/6530/2022,BA.5.1 Portugal/PT36839/2022,BA.5.1 Israel/SMC-7074527/2022,BA.5.1 -Scotland/LSPA-3E4E9C8/2022,BA.5.1 Denmark/DCGC-524902/2022,BA.5.1 Denmark/DCGC-531306/2022,BA.5.1 Spain/GA-CHUVI-34760265/2022,BA.5.1 @@ -1808340,7 +1808335,6 @@ Belgium/UZA-UA-CV8297771030/2022,BA.5.1 France/PDL-IPP36218/2022,BA.5.1 France/NAQ-HCL722003012501/2022,BA.5.1.17 Belgium/ULG-26573/2022,BA.5.1 -England/LSPA-3E3A710/2022,BA.5.1 Scotland/LSPA-3E63927/2022,BA.5.1 Israel/ICH-741237307/2022,BA.5.1 England/QEUH-3E49954/2022,BA.5.1 @@ -1808663,7 +1808657,6 @@ Germany/BB-RKI-I-866311/2022,BA.5.1 England/QEUH-3E5D51D/2022,BA.5.1 Austria/LB-R00080-S082/2022,BA.5.1 Germany/BY-RKI-I-867753/2022,BA.5.1 -England/PHEC-YYFXI9J/2022,BA.5.1 Austria/LB-R00082-S065/2022,BA.5.1 Germany/BY-RKI-I-868536/2022,BA.5.1 Luxembourg/LNS8952689/2022,BA.5.1 @@ -1808676,7 +1808669,6 @@ Portugal/PT35681/2022,BA.5.1 Germany/RP-RKI-I-873109/2022,BA.5.1 France/NOR-HMN-22062100407/2022,BA.5.1 Belgium/AZDelta-2218-01418/2022,BA.5.1 -Portugal/PT37166/2022,BA.5.1 France/NAQ-HCL722002940501/2022,BA.5.1 Netherlands/FL-RIVM-102209/2022,BA.5.1 Italy/LOM_Policlinico_Milano_25803543/2022,BA.5.1 @@ -1808720,7 +1808712,6 @@ USA/NY-PRL-220610_02J16/2022,BA.5.1 Luxembourg/LNS7252696/2022,BA.5.1 Denmark/DCGC-527596/2022,BA.5.1 Denmark/DCGC-528350/2022,BA.5.1.4 -Switzerland/GE-DIA-011452907201/2022,BA.5.1 France/BRE-IPP36070/2022,BA.5.1 Germany/RP-RKI-I-872943/2022,BA.5.1 Italy/EMR_AUSLRomagna_C054-22-01/2022,BA.5.1.10 @@ -1808731,7 +1808722,6 @@ Germany/BW-RKI-I-874078/2022,BA.5.1 Denmark/DCGC-533988/2022,BA.5.1 Spain/CM-HGUCR-873747/2022,BA.5.1 France/IDF-IPP39402/2022,BA.5.1 -Portugal/PT36094/2022,BA.5.1 Norway/23406/2022,BA.5.1 Denmark/DCGC-532973/2022,BA.5.1 Denmark/DCGC-534524/2022,BA.5.1 @@ -1808884,7 +1808874,6 @@ France/ARA-CFD220031845002/2022,BA.5.1 USA/NE-NM_L354040711/2022,BA.5.1.4 Germany/NW-RKI-I-870406/2022,BA.5.1 Belgium/UZA-UA-CV8305333390/2022,BA.5.1 -Portugal/PT35123/2022,BA.5.1 France/CVL-IPP37441/2022,BA.5.1 Denmark/DCGC-535527/2022,BA.5.1 Spain/CT-HUVH-E33487/2022,BA.5.1 @@ -1808923,7 +1808912,6 @@ England/PHEC-YYFOYCN/2022,BA.5.1 Scotland/LSPA-3E51EB4/2022,BA.5.1.10 Ireland/LS-NVRL-S22IRL00343199/2022,BA.5.1 Portugal/PT36739/2022,BA.5.1 -England/PHEC-YYFOEZD/2022,BA.5.1 England/QEUH-3E4D0B5/2022,BA.5.1 Portugal/PT36249/2022,BA.5.1 Israel/CVL-8008144/2022,BA.5.1 @@ -1809151,7 +1809139,6 @@ England/LSPA-3E67598/2022,BA.5.1 Indonesia/JK-CW62-0994/2022,BA.5.1 England/LSPA-3E35C52/2022,BA.5.1 Ireland/D-NVRL-S22IRL00342475/2022,BA.5.1 -Portugal/PT34413/2022,BA.5.1 England/QEUH-3E41AA4/2022,BA.5.1 Israel/ICH-741226430/2022,BA.5.1 Portugal/PT35761/2022,BA.5.1 @@ -1809280,7 +1809267,6 @@ Germany/NW-RKI-I-874038/2022,BA.5.1 Scotland/LSPA-3E4E53D/2022,BA.5.1 Netherlands/NB-RIVM-103116/2022,BA.5.1 Denmark/DCGC-531527/2022,BA.5.1 -Germany/NI-RKI-I-872730/2022,BA.5.1 Scotland/LSPA-3E59F04/2022,BA.5.1 USA/MI-UM-10045802517/2022,BA.5.1 Denmark/DCGC-533275/2022,BA.5.1 @@ -1809319,7 +1809305,6 @@ Portugal/PT36221/2022,BA.5.1 Belgium/UZA-UA-CV8435117572/2022,BA.5.1 Denmark/DCGC-533381/2022,BA.5.1 England/LSPA-3E60E1C/2022,BA.5.1 -England/QEUH-3E49BC7/2022,BA.5.1 Luxembourg/LNS3033710/2022,BA.5.1 Peru/ANC-INS-18704/2022,BA.5.1.8 Denmark/DCGC-533073/2022,BA.5.1 @@ -1809370,7 +1809355,6 @@ Denmark/DCGC-526325/2022,BA.5.1 Portugal/PT35476/2022,BA.5.1 Scotland/LSPA-3E3E8EC/2022,BA.5.1 Switzerland/GE-HUG-38196665/2022,BA.5.1 -Israel/ICH-741229412/2022,BA.5.1 England/PHEC-YYFQT43/2022,BA.5.1 Belgium/UZA-UA-CV8297835290/2022,BA.5.1 Denmark/DCGC-518002/2022,BA.5.1 @@ -1809400,7 +1809384,6 @@ Germany/NW-HHU-28710/2022,BA.5.1 Canada/AB-ABPHL-69960/2022,BA.5.1 Germany/NW-RKI-I-869132/2022,BA.5.1 France/ARA-HCL722002979201/2022,BA.5.1 -USA/AL-CDC-STM-KYKE3NMSN/2022,BA.5.1 Denmark/DCGC-521896/2022,BA.5.1 France/PAC-HCL722002975301/2022,BA.5.1 Switzerland/BS-ETHZ-37614463/2022,BA.5.1 @@ -1809455,7 +1809438,6 @@ Israel/ICH-741229334/2022,BA.5.1 Portugal/PT37244/2022,BA.5.1 Denmark/DCGC-532875/2022,BA.5.1 Germany/RP-RKI-I-851492/2022,BA.5.1 -England/LSPA-3E20003/2022,BA.5.1 Spain/GA-CHUVI-19542912/2022,BA.5.1 Germany/NI-RKI-I-873377/2022,BA.5.1 England/PHEC-YYFQ9QR/2022,BA.5.1 @@ -1809553,7 +1809535,6 @@ Austria/LB-R00083-S058/2022,BA.5.1 England/QEUH-3E41822/2022,BA.5.1 Denmark/DCGC-530998/2022,BA.5.1 Netherlands/NH-RIVM-103089/2022,BA.5.1 -Scotland/SCOT-13369/2022,BA.5.1 Denmark/DCGC-529314/2022,BA.5.1 Portugal/PT35496/2022,BA.5.1 Belgium/CHUNamur14172819/2022,BA.5.1 @@ -1809769,7 +1809750,6 @@ England/LSPA-3E6330B/2022,BA.5.1 Denmark/DCGC-523428/2022,BA.5.1 Israel/ICH-741232453/2022,BA.5.1 Denmark/DCGC-528524/2022,BA.5.1 -England/LSPA-3E49392/2022,BA.5.1 Denmark/DCGC-535400/2022,BA.5.1 Denmark/DCGC-526943/2022,BA.5.1 Denmark/DCGC-534340/2022,BA.5.1 @@ -1809873,7 +1809853,6 @@ Portugal/PT35409/2022,BA.5.1 Germany/NW-RKI-I-868862/2022,BA.5.1 Germany/BY-RKI-I-822684/2022,BA.5.1 England/PHEC-YYFQTZ9/2022,BA.5.1 -Belgium/UZA-UA-CV8526047901/2022,BA.5.1 Netherlands/NH-AUMC-022917/2022,BA.5.1 England/PHEC-YYFX3D6/2022,BA.5.1 England/PHEC-YYFO1YE/2022,BA.5.1 @@ -1810004,7 +1809983,6 @@ Israel/ICH-741233352/2022,BA.5.1.4 Ireland/KY-Enfer-160622009_F11/2022,BA.5.1.5 Israel/SMC-7077597/2022,BA.5.1 Canada/BC-BCCDC-440919/2022,BA.5.1 -England/PHEC-YYFO4H8/2022,BA.5.1 Scotland/LSPA-3E65D47/2022,BA.5.1 Netherlands/NH-inBiome-211726/2022,BA.5.1 Germany/BW-RKI-I-863978/2022,BA.5.1 @@ -1810108,7 +1810086,6 @@ Germany/BW-RKI-I-863801/2022,BA.5.1 USA/ND-NDDH-16524/2022,BA.5.1 USA/NY-CDC-QDX37210829/2022,BA.5.1 England/LSPA-3E486D6/2022,BA.5.1 -Italy/TAA-PAB_SABES_1900934451/2022,BA.5.1 Denmark/DCGC-535502/2022,BA.5.1 England/LSPA-3E5C077/2022,BA.5.1 Denmark/DCGC-526863/2022,BA.5.1 @@ -1810193,7 +1810170,6 @@ Portugal/PT36738/2022,BA.5.1 Denmark/DCGC-533719/2022,BA.5.1.4 Israel/ICH-741228334/2022,BA.5.1 Belgium/UGent-4062/2022,BA.5.1 -England/LSPA-3E50714/2022,BA.5.1 Portugal/PT36931/2022,BA.5.1 Spain/MD-HGUGM-6643633/2022,BA.5.1 France/BRE-IPP37793/2022,BA.5.1 @@ -1810343,7 +1810319,6 @@ England/QEUH-3E2A7C8/2022,BA.5.1 England/QEUH-3E5326B/2022,BA.5.1 Spain/CT-HUGTiPM100PY5F10/2022,BA.5.1 Germany/NW-HHU-28722/2022,BA.5.1 -England/QEUH-3E56277/2022,BA.5.1 Italy/LIG-284360157/2022,BA.5.1 France/ARA-HCL022084967301/2022,BA.5.1 Israel/SMC-7073569/2022,BA.5.1 @@ -1810370,7 +1810345,6 @@ Israel/CVL-9005092/2022,BA.5.1 Norway/23440/2022,BA.5.1 Denmark/DCGC-517478/2022,BA.5.1 Luxembourg/LNS2862333/2022,BA.5.1 -Israel/ICH-741232476/2022,BA.5.1 England/PHEC-YYFXOK3/2022,BA.5.1 Germany/BY-RKI-I-859374/2022,BA.5.1 Germany/SH-RKI-I-848571/2022,BA.5.1 @@ -1810378,7 +1810352,6 @@ Germany/NW-RKI-I-869739/2022,BA.5.1.16 Austria/LB-R00080-S036/2022,BA.5.1 Germany/BY-RKI-I-829813/2022,BA.5.1 France/NAQ-HCL722003011801/2022,BA.5.1 -Switzerland/VD-CHUV-GEN11819/2022,BA.5.1 Portugal/PT34653/2022,BA.5.1 France/ARA-HCL722002975501/2022,BA.5.1 Switzerland/VS-ICH-2220556027/2022,BA.5.1 @@ -1928757,7 +1928730,6 @@ Spain/MD-HULP-061215239/2022,BA.5.1 Turkey/HSGM-GS5627/2022,BA.5.1 USA/NY-CDC-LC0725158/2022,BA.5.1 Sweden/38165241XXP/2022,BA.5.1 -Ireland/WW-NVRL-S22IRL00357868/2022,BA.5.1 England/QEUH-3E87802/2022,BA.5.1 Italy/FVG-TS-38503471/2022,BA.5.1 Germany/NW-RKI-I-879196/2022,BA.5.1 @@ -1928921,7 +1928893,6 @@ Wales/PHWC-PJ6I6Q/2022,BA.5.1.10 Israel/ICH-741233348/2022,BA.5.1 Scotland/LSPA-3E7E886/2022,BA.5.1 Canada/ON-PHL-22-24630-v2/2022,BA.5.1 -Belgium/UZA-UA-CV8411217176/2022,BA.5.1 France/HDF-IPP41027/2022,BA.5.1 England/PHEP-YYFN569/2022,BA.5.1 Luxembourg/LNS3376217/2022,BA.5.1 @@ -1928947,7 +1928918,6 @@ Chile/RM-75639/2022,BA.5.1 Portugal/PT38602/2022,BA.5.1 USA/CA-OC-2772/2022,BA.5.1 USA/NJ-CDC-LC0742487/2022,BA.5.1 -England/PHEP-YYFBISZ/2022,BA.5.1 Brazil/SP-IB_00566/2022,BA.5.1 England/QEUH-3E7C25D/2022,BA.5.1 Austria/CeMM31392/2022,BA.5.1 @@ -1929026,7 +1928996,6 @@ USA/NY-PRL-220624_00G05/2022,BA.5.1.10 Denmark/DCGC-539861/2022,BA.5.1 Germany/BY-RKI-I-845698/2022,BA.5.1 Israel/ICH-741239343/2022,BA.5.1 -England/PHEC-YYFOQEH/2022,BA.5.1 Israel/ICH-741232341/2022,BA.5.1.10 Brazil/SP-IB_159779/2022,BA.5.1 England/LSPA-3E787CB/2022,BA.5.1 @@ -1929047,7 +1929016,6 @@ Mexico/CMX-INER-IBT-1864/2022,BA.5.1 USA/CA-CDC-LC0721250/2022,BA.5.1 England/PHEP-YYFDNIE/2022,BA.5.1 England/LSPA-3E4D695/2022,BA.5.1 -England/QEUH-3E608D2/2022,BA.5.1 Denmark/DCGC-546783/2022,BA.5.1.11 Wales/QEUH-3E6A823/2022,BA.5.1 Israel/ICH-741234408/2022,BA.5.1 @@ -1929159,7 +1929127,6 @@ Luxembourg/LNS7713432/2022,BA.5.1 Denmark/DCGC-528416/2022,BA.5.1 Denmark/DCGC-535788/2022,BA.5.1 France/PDL-CERBAHC-05772569/2022,BA.5.1 -England/LSPA-3EBDAFE/2022,BA.5.1 England/QEUH-3ECA43C/2022,BA.5.1 France/NAQ-HCL722003062001/2022,BA.5.1 USA/NY-PRL-220627_02N19/2022,BA.5.1 @@ -1929466,7 +1929433,6 @@ Spain/MD-HULP-061226470/2022,BA.5.1 England/QEUH-3EB3E65/2022,BA.5.1 USA/DC-CDC-LC0727368/2022,BA.5.1 Australia/NSW-SAVID-12940/2022,BA.5.1 -USA/AZ-CDC-LC0731468/2022,BA.5.1 USA/NY-NYCPHL-013515/2022,BA.5.1 Luxembourg/LNS2963739/2022,BA.5.1 Germany/ST-RKI-I-853343/2022,BA.5.1 @@ -1929652,7 +1929618,6 @@ France/HDF-IPP41278/2022,BA.5.1 Denmark/DCGC-529029/2022,BA.5.1 Netherlands/FR-RIVM-104618/2022,BA.5.1 Peru/LIM-INS-19820/2022,BA.5.1 -Portugal/PT35618/2022,BA.5.1 USA/NJ-CDC-QDX38089298/2022,BA.5.1 Portugal/PT35151/2022,BA.5.1 USA/NY-PRL-220705_04F13/2022,BA.5.1 @@ -1929758,7 +1929723,6 @@ USA/IN-CDC-STM-9FSXAKYTV/2022,BA.5.1 France/IDF-IPP40865/2022,BA.5.1 USA/PA-CDC-LC0714874/2022,BA.5.1 Denmark/DCGC-537737/2022,BA.5.1 -Estonia/RC0708489/2022,BA.5.1 England/LSPA-3E6F202/2022,BA.5.1 Germany/BY-RKI-I-840934/2022,BA.5.1 Denmark/DCGC-530034/2022,BA.5.1 @@ -1929788,7 +1929752,6 @@ Belgium/AZDelta-2224-03889/2022,BA.5.1 England/LSPA-3EA6797/2022,BA.5.1 Croatia/38064/2022,BA.5.1 England/QEUH-3EC274A/2022,BA.5.1 -England/LSPA-3E6DFA3/2022,BA.5.1 England/LSPA-3E9D362/2022,BA.5.1 France/HDF-IPP37690/2022,BA.5.1 France/HDF-IPP41037/2022,BA.5.1 @@ -1929822,7 +1929785,6 @@ Belgium/ULB-IBC_CV8496895761/2022,BA.5.1 Denmark/DCGC-528032/2022,BA.5.1 Brazil/SP-IB_158143/2022,BA.5.1 France/CVL-LBZCentre-A320157988/2022,BA.5.1 -England/LSPA-3E6DFB2/2022,BA.5.1 USA/ME-HETL-J15807/2022,BA.5.1 Israel/ICH-741240876/2022,BA.5.1 Denmark/DCGC-533355/2022,BA.5.1 @@ -1929931,7 +1929893,6 @@ Canada/ON-PHL-22-22177/2022,BA.5.1 England/PHEC-YYFU6BW/2022,BA.5.1 USA/CO-CDPHE-2103288937/2022,BA.5.1 England/LSPA-3E729E9/2022,BA.5.1 -England/LSPA-3E6F31E/2022,BA.5.1 Spain/GA-CHOP-51906673/2022,BA.5.1 England/LSPA-3EA6B7D/2022,BA.5.1 USA/CA-CDC-LC0742519/2022,BA.5.1 @@ -1929964,7 +1929925,6 @@ Spain/GA-CHUVI-19545064/2022,BA.5.1 Luxembourg/LNS3646905/2022,BA.5.1 Italy/EMR-IZSLER-2022-201437-010-01/2022,BA.5.1.10 USA/NV-CDC-LC0721928/2022,BA.5.1 -Netherlands/GE-RIVM-104199/2022,BA.5.1 Belgium/rega-42780/2022,BA.5.1 Denmark/DCGC-545146/2022,BA.5.1 Netherlands/DR-RIVM-102191/2022,BA.5.1 @@ -1929980,7 +1929940,6 @@ Netherlands/NH-RIVM-104813/2022,BA.5.1 Germany/RP-RKI-I-877417/2022,BA.5.1 England/LSPA-3EA2B62/2022,BA.5.1 France/BRE-IPP36074/2022,BA.5.1 -England/LSPA-3E88F39/2022,BA.5.1 Netherlands/FR-RIVM-104473/2022,BA.5.1 England/QEUH-3E769C7/2022,BA.5.1 Luxembourg/LNS7902811/2022,BA.5.1 @@ -1930125,7 +1930084,6 @@ Denmark/DCGC-546527/2022,BA.5.1.11 USA/NY-PRL-220630_02E10/2022,BA.5.1 Wales/PHWC-PJ61NK/2022,BA.5.1 Switzerland/AG-ETHZ-37681270/2022,BA.5.1 -Scotland/SCOT-14647/2022,BA.5.1 Brazil/CE-FIOCRUZ-94007CE/2022,BA.5.1 Denmark/DCGC-524498/2022,BA.5.1 Mexico/PUE_InDRE_FB15356_E21317197467_S13787/2022,BA.5.1 @@ -1930179,10 +1930137,8 @@ Portugal/PT35647/2022,BA.5.1 Luxembourg/LNS2003337/2022,BA.5.1 France/BRE-IPP37828/2022,BA.5.1 Brazil/SP-IB_00275/2022,BA.5.1 -Brazil/CE-FIOCRUZ-92028CE/2022,BA.5.1 USA/IL-CDC-STM-P2WDEXXUY/2022,BA.5.1 Luxembourg/LNS2104431/2022,BA.5.1 -Scotland/LSPA-3E6208D/2022,BA.5.1 Portugal/PT35903/2022,BA.5.1 Finland/THL-202214792/2022,BA.5.1 Belgium/ULG-26562/2022,BA.5.1 @@ -1930256,7 +1930212,6 @@ Spain/CT-HUVH-E60914/2022,BA.5.1 Canada/QC-L00490294001/2022,BA.5.1 Denmark/DCGC-545592/2022,BA.5.1 Denmark/DCGC-543650/2022,BA.5.1.11 -Germany/HH-hpi-p15843/2022,BA.5.1 Norway/25566/2022,BA.5.1 England/PHEC-YYFIXOY/2022,BA.5.1 Denmark/DCGC-528623/2022,BA.5.1 @@ -1930338,7 +1930293,6 @@ Portugal/PT35721/2022,BA.5.1 Luxembourg/LNS5758123/2022,BA.5.1 Denmark/DCGC-548107/2022,BA.5.1 Brazil/CE-FIOCRUZ-94106CE/2022,BA.5.1 -Wales/QEUH-3E836EE/2022,BA.5.1 Portugal/PT38751/2022,BA.5.1 England/PHEP-YYF8JW5/2022,BA.5.1.19 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USA/WA-CDC-UW22070553570/2022,BA.5.1 Austria/LB-R00080-S029/2022,BA.5.1 @@ -2003455,7 +2003342,6 @@ England/PHEP-YYFBM9X/2022,BA.5.3.3 Italy/LOM_Sacco_Var_R31408/2022,BA.5.1 USA/VA-Curative-419984/2022,BA.5.1 Denmark/DCGC-558116/2022,BA.5.1 -England/LSPA-3F52C6D/2022,BA.5.1 USA/NY-CDC-QDX38969725/2022,BA.5.1 Germany/BW-RKI-I-898164/2022,BA.5.1 Spain/IB-HUSE-05721/2022,BA.5.1 @@ -2003596,7 +2003482,6 @@ Austria/LB-R00084-S025/2022,BA.5.1 Wales/QEUH-3E454A2/2022,BA.5.1 Germany/NW-RKI-I-919073/2022,BA.5.1 Denmark/DCGC-549886/2022,BA.5.1 -USA/WA-CDC-UW22071067368/2022,BA.5.1 Luxembourg/LNS3146949/2022,BA.5.1 Wales/PHWC-PJ69R3/2022,BA.5.1 USA/CT-CDC-LC0808662/2022,BA.5.1 @@ -2003954,7 +2003839,6 @@ Italy/LIG-252584427/2022,BA.5.1 Colombia/ANT-CWOHC-VG-SEC03992N/2022,BA.5.1 England/QEUH-3E5707C/2022,BA.5.1 Germany/RP-RKI-I-877850/2022,BA.5.1 -USA/OR_UO_MAP005055/2022,BA.5.1 USA/NC-CDC-LC0753200/2022,BA.5.1 Ireland/D-NVRL-S22IRL00396187/2022,BA.5.1 USA/FL-CDC-QDX39216995/2022,BA.5.1 @@ 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-2006241,7 +2006112,6 @@ Denmark/DCGC-544598/2022,BA.5.1 England/PHEC-YYF9UZ4/2022,BA.5.1 Germany/SN-RKI-I-893127/2022,BA.5.1 Sweden/461848077281/2022,BA.5.1 -Germany/BB-RKI-I-880777/2022,BA.5.1 USA/OR-CDC-LC0791348/2022,BA.5.1 Germany/SN-RKI-I-946320/2022,BA.5.1 USA/CA-CDC-LC0776576/2022,BA.5.1 @@ -2006290,7 +2006160,6 @@ Netherlands/OV-RIVM-104302/2022,BA.5.1 Germany/SN-RKI-I-932300/2022,BA.5.1 Germany/NW-RKI-I-926625/2022,BA.5.1 USA/NY-PRL-220705_04B21/2022,BA.5.1 -Netherlands/FL-RIVM-101727/2022,BA.5.1 Germany/BW-RKI-I-878533/2022,BA.5.1 USA/NE-SALIVA_S892184/2022,BA.5.1 Denmark/DCGC-557030/2022,BA.5.1 @@ -2006312,9 +2006181,7 @@ France/ARA-GENBIO-14291741445/2022,BA.5.1 USA/IA-SHL-2142463/2022,BA.5.1 Netherlands/NH-AUMC-029921/2022,BA.5.1 Spain/PV-HUG198/2022,BA.5.1 -Germany/NW-RKI-I-900967/2022,BA.5.1 Germany/SN-RKI-I-901461/2022,BA.5.1 -Germany/NW-RKI-I-904062/2022,BA.5.1 Spain/PV-HUD-77516186/2022,BA.5.1 France/ARA-CHUGA-2070972336/2022,BA.5.1 France/GES-HMN-22062300567/2022,BA.5.1 @@ -2006486,7 +2006353,6 @@ Italy/TAA-PAB_SABES_1900947792/2022,BA.5.1 Canada/ON-PHL-22-27477-v2/2022,BA.5.1 Portugal/PT35948/2022,BA.5.1 Denmark/DCGC-535562/2022,BA.5.1 -England/LSPA-3EBD760/2022,BA.5.1 France/ARA-HCL722003422301/2022,BA.5.1 USA/NY-CDC-LC0806045/2022,BA.5.1 Netherlands/NH-AUMC-023482/2022,BA.5.1 @@ -2006805,7 +2006671,6 @@ Spain/CT-HUGTiPM108RI8F9/2022,BA.5.1 Luxembourg/LNS8695933/2022,BA.5.1 Luxembourg/LNS5217415/2022,BA.5.1 USA/IL-CDC-QDX38009497/2022,BA.5.1 -Italy/FVG-UD-64046208/2022,BA.5.1 USA/CA-CDC-QDX39548683/2022,BA.5.1 USA/FL-CDC-QDX39413515/2022,BA.5.1 USA/NY-PRL-220629_01N14/2022,BA.5.1 @@ -2006937,7 +2006802,6 @@ Japan/OPHO-Hb73-495/2022,BA.5.1 Germany/BW-RKI-I-927266/2022,BA.5.1 England/PHEC-YYGBOPQ/2022,BA.5.1 Germany/NW-RKI-I-872682/2022,BA.5.1 -Germany/NW-HHU-29850/2022,BA.5.1 Italy/VEN-IZSVe-22RS8240-8_VI/2022,BA.5.1 France/OCC-GENBIO-U37CV2130138/2022,BA.5.1 Slovenia/08-096841-MB/2022,BA.5.1 @@ -2007102,7 +2006966,6 @@ Germany/SN-RKI-I-951923/2022,BA.5.1 Germany/SN-RKI-I-951440/2022,BA.5.1 Germany/HB-RKI-I-932793/2022,BA.5.1 Denmark/DCGC-542961/2022,BA.5.1 -England/PLYM-3EE0096/2022,BA.5.1 France/HDF-cerba-22Q0646256/2022,BA.5.1 Israel/ICH-741181374/2022,BA.5.1 Netherlands/LI-RIVM-104923/2022,BA.5.1 @@ -2007543,7 +2007406,6 @@ USA/PA-CDC-QDX38634428/2022,BA.5.1 Canada/ON-PHL-22-31280/2022,BA.5.1 Mexico/CHH_InDRE_FB16447_E08317442754_S13915/2022,BA.5.1 Ireland/TA-NVRL-S22IRL00369679/2022,BA.5.1 -Canada/QC-L00486839001/2022,BA.5.1 France/NAQ-HCL722003296501/2022,BA.5.1 India/WB-INSACOG-1932000426306/2022,BA.5.1 Serbia/J948300-07/2022,BA.5.1 @@ -2007778,7 +2007640,6 @@ Germany/BY-RKI-I-881829/2022,BA.5.1 Portugal/PT34986/2022,BA.5.1 Germany/BW-RKI-I-928908/2022,BA.5.1 Portugal/PT38679/2022,BA.5.1 -USA/NC-CORVASEQ-UNC-7182/2022,BA.5.1 Australia/QLD0x00FEC5/2022,BA.5.1 France/OCC-GENBIO-F06001711238/2022,BA.5.1 Germany/RP-USAFSAM-S17933/2022,BA.5.1 @@ -2007844,7 +2007705,6 @@ England/PHEC-YYGYWNN/2022,BA.5.1 France/CVL-cerba-22Q0497376/2022,BA.5.1 France/BFC-HMN-22062300189/2022,BA.5.1 England/PHEC-YYGRTCJ/2022,BA.5.1 -England/PHEP-YYFJOAE/2022,BA.5.1 Ireland/WW-FAS37243_032/2022,BA.5.1 Finland/THL-202216309/2022,BA.5.1 Canada/un-NML-446797/2022,BA.5.1 @@ -2007959,7 +2007819,6 @@ England/LSPA-3E91164/2022,BA.5.1 England/PLYM-3EFB2B0/2022,BA.5.1 Japan/TKYnat4774/2022,BA.5.1 USA/CA-HLX-STM-W8W2A2ZUK/2022,BA.5.1 -France/IDF-HMN-22072150072/2022,BA.5.1 Israel/ICH-741235333/2022,BA.5.1 England/PHEC-YYFSDYM/2022,BA.5.1 USA/CT-CDCBI-CRSP_HPT5LPHSCBVRUYOE/2022,BA.5.1 @@ -2008197,7 +2008056,6 @@ Chile/AP-94545/2022,BA.5.1 Ireland/CO-NVRL-ecS22IRL00357723/2022,BA.5.1 Switzerland/ZH-UZH-IMV-3ba6558a/2022,BA.5.1 England/LSPA-3E485E8/2022,BA.5.1 -Germany/NI-IOV-60489584/2022,BA.5.1 England/PHEC-YYGJKY6/2022,BA.5.1 Denmark/DCGC-558896/2022,BA.5.1 USA/NJ-CDC-LC0824298/2022,BA.5.1 @@ -2008702,7 +2008560,6 @@ Germany/SH-RKI-I-952600/2022,BA.5.1 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Germany/NW-RKI-I-878170/2022,BA.5.1 Germany/ST-RKI-I-917888/2022,BA.5.1 -England/PLYM-3EDE699/2022,BA.5.1 Denmark/DCGC-527757/2022,BA.5.1.17 Denmark/DCGC-562743/2022,BA.5.1 USA/CT-CDC-LC0762804/2022,BA.5.1 @@ -2009381,7 +2009235,6 @@ Germany/SH-RKI-I-887729/2022,BA.5.1 USA/NY-UB-KSL-06372/2022,BA.5.1 Peru/ARE-INS-22954/2022,BA.5.1 France/CVL-LBZCentre-A340127990/2022,BA.5.1 -Germany/HE-RKI-I-927951/2022,BA.5.1 Japan/TKYkbm30957/2022,BT.1 USA/PA-CDC-LC0824753/2022,BA.5.1 Russia/SPE-RII-28627S/2022,BA.5.1 @@ -2009543,7 +2009396,6 @@ Spain/AS-252220869/2022,BA.5.1 Italy/SIC-CQRC-3422054928-2022/2022,BA.5.1 Canada/QC-L00500821001/2022,BA.5.1 Germany/SH-RKI-I-876136/2022,BA.5.1 -England/LSPA-3E3B779/2022,BA.5.1 Denmark/DCGC-534438/2022,BA.5.1 Germany/SN-RKI-I-946261/2022,BA.5.1 Portugal/PT38358/2022,BA.5.1 @@ -2009620,7 +2009472,6 @@ Sweden/6283356763/2022,BA.5.1 Germany/HH-RKI-I-937692/2022,BA.5.1 Denmark/DCGC-558861/2022,BA.5.1 Sweden/01_SE100_22CS507154/2022,BA.5.1 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USA/NJ-CDC-LC0711635/2022,BA.5.1 Denmark/DCGC-534926/2022,BA.5.1 @@ -2009890,7 +2009738,6 @@ Sweden/38201456XXP/2022,BA.5.1 Belgium/Jessa_11-2227-001198/2022,BA.5.1 Ireland/WW-NVRL-S22IRL00342524/2022,BA.5.1 Israel/ICH-741247997/2022,BA.5.1 -England/LSPA-3EBD5B1/2022,BA.5.1 Estonia/RC0707751/2022,BA.5.1 Spain/GA-CHUVI-19542160/2022,BA.5.1 Greece/27484/2022,BA.5.1 @@ -2010045,7 +2009892,6 @@ Ireland/OY-NVRL-S22IRL00356312/2022,BA.5.1 Netherlands/NB-MVD-CWGS2202957/2022,BA.5.1 Scotland/LSPA-3E9AFAD/2022,BA.5.1 Brazil/SP-IB_159788/2022,BA.5.1 -USA/MN-MDH-27899/2022,BA.5.1 France/OCC-GENBIO-L68GN1590048/2022,BA.5.1.17 Mexico/YUC-INMEGEN-80-105/2022,BA.5.1 Ireland/KE-NVRL-S22IRL00368396/2022,BA.5.1 @@ -2010092,7 +2009938,6 @@ England/PHEC-YYFQ3MO/2022,BA.5.1 USA/IN-CDC-QDX38635881/2022,BA.5.1 USA/NY-PRL-220729_02B08/2022,BA.5.1 Germany/BW-RKI-I-892772/2022,BA.5.1 -France/GES-HMN-22062300394/2022,BA.5.1 USA/WA-CDC-UW22071119411/2022,BA.5.1 USA/NY-CDC-LC0788849/2022,BA.5.1 Luxembourg/LNS3138906/2022,BA.5.1 @@ -2010235,7 +2010080,6 @@ France/GES-HMN-22072051203/2022,BA.5.1 Israel/SMC-7089368/2022,BA.5.1 Israel/SMC-7086616/2022,BA.5.1 Switzerland/ZH-ETHZ-38002519/2022,BA.5.1 -England/QEUH-3EF780D/2022,BA.5.1 England/LSPA-3EC852C/2022,BA.5.1 Japan/TKYkbm32152/2022,BA.5.1 Mexico/ROO_IBT_IMSS_8461/2022,BA.5.1 @@ -2010398,7 +2010242,6 @@ Finland/THL-202214953/2022,BA.5.1 Denmark/DCGC-540660/2022,BA.5.1 Germany/BY-RKI-I-891601/2022,BA.5.1 Brazil/SP-IB_CEVC_2201805/2022,BA.5.1 -England/PHEC-YYFWA5D/2022,BA.5.1 Luxembourg/LNS4205854/2022,BA.5.1 France/ARA-GENBIO-14292081288/2022,BA.5.1 Switzerland/BS-UHB-o9yvwy0/2022,BA.5.1 @@ -2010472,7 +2010315,6 @@ USA/CA-HLX-STM-YVXGBU53N/2022,BA.5.1 USA/OR-CDC-LC0764543/2022,BA.5.1 Germany/BY-RKI-I-952093/2022,BA.5.1 Belgium/UMONS-P063450801/2022,BA.5.1 -England/PHEC-YYFH8GX/2022,BA.5.1 France/ARA-GENBIO-14291882695/2022,BA.5.1 Germany/BY-RKI-I-939592/2022,BA.5.1 Netherlands/ZH-RIVM-107126/2022,BA.5.1 @@ -2010780,7 +2010622,6 @@ France/CVL-IPP44926/2022,BA.5.1 Germany/SN-RKI-I-901922/2022,BA.5.1 Mexico/NLE_IBT_IMSS_8516/2022,BA.5.1 England/PHEP-YYFGOPF/2022,BA.5.1 -USA/UT-UPHL-220725811221/2022,BA.5.1 Austria/LB-R00090-S026/2022,BA.5.1 France/GES-HMN-22082030247/2022,BA.5.1 Mexico/MEX-INMEGEN-84-198/2022,BA.5.1 @@ -2011174,7 +2011015,6 @@ Scotland/SCOT-13344/2022,BA.5.1 USA/MI-CDC-QDX39659583/2022,BA.5.1 Scotland/SCOT-13846/2022,BA.5.1 England/QEUH-3EAB1A3/2022,BA.5.1 -Portugal/PT37195/2022,BA.5.1 France/PAC-LBZCentre-A2206200184/2022,BA.5.1 Scotland/LSPA-3F05856/2022,BA.5.1 Italy/CAM-TIGEM-IZSM-COLLI-34050/2022,BA.5.1 @@ -2011492,7 +2011332,6 @@ Germany/BY-RKI-I-916800/2022,BA.5.1 England/LSPA-3F0A226/2022,BA.5.1 Denmark/DCGC-559142/2022,BA.5.1 Japan/PG-286746/2022,BA.5.1.16 -Germany/BW-RKI-I-954001/2022,BA.5.1 Denmark/DCGC-540816/2022,BA.5.1 Denmark/DCGC-529531/2022,BA.5.1 Sweden/22-575761/2022,BA.5.1 @@ -2011835,7 +2011674,6 @@ Netherlands/FR-RIVM-107044/2022,BA.5.1 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France/NAQ-GENBIO-A41GN1530050/2022,BA.5.1 -Canada/NB-CHUDGLD-180722-MM00435R/2022,BA.5.1 England/PHEP-YYFQAG5/2022,BA.5.1 Portugal/PT36111/2022,BA.5.1 Portugal/PT37175/2022,BA.5.1 @@ -2013272,7 +2013104,6 @@ Germany/RP-RKI-I-923751/2022,BA.5.1 Israel/SMC-7095969/2022,BA.5.1 Netherlands/LI-RIVM-105116/2022,BA.5.1 Portugal/PT39858/2022,BA.5.1 -Portugal/PT36353/2022,BA.5.1 France/PAC-ChTo-B222410075/2022,BA.5.1 USA/NY-MSK-6507/2022,BA.5.1 Germany/TH-RKI-I-947163/2022,BA.5.1 @@ -2013401,7 +2013232,6 @@ USA/TX-HMH-M-107449/2022,BA.5.1 Spain/MD-HULP-061300192/2022,BA.5.1 England/PHEC-YYG13KE/2022,BA.5.1 England/QEUH-3F52957/2022,BA.5.1 -Germany/HB-RKI-I-886716/2022,BA.5.1 Ireland/CO-NVRL-S22IRL00395891/2022,BA.5.1 Denmark/DCGC-522372/2022,BA.5.1 England/PHEC-YYGM76K/2022,BA.5.1 @@ -2013458,7 +2013288,6 @@ England/LSPA-3F3A9DD/2022,BA.5.1 Italy/TAA-PAB_SABES_1900948623/2022,BA.5.1 USA/FL-BPHL-10944/2022,BA.5.1 Switzerland/GE-HUG-38697439/2022,BA.5.1 -Scotland/SCOT-16666/2022,BA.5.1 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Italy/CAM-TIGEM-IZSM-COLLI-32130/2022,BA.5.1.22 England/PHEC-YYF319Z/2022,BA.5.1.22 @@ -2152301,7 +2152098,6 @@ Germany/BE-RKI-I-1067435/2022,CL.1.1 Germany/HB-RKI-I-1084330/2022,CL.1.1 Germany/BE-ChVir-LB-221230-4773/2022,CL.1.1 Germany/BW-RKI-I-1085476/2023,CL.1.1 -strain,BA.5.1.33 Sweden/1600032564/2022,BA.5.1.33 Pakistan/NIH-B104-S15/2022,BA.5.1.33 Italy/EMR_AUSL_C102-22-04/2022,BA.5.1.33 @@ -2153538,7 +2153334,6 @@ France/CVL-ChuTo-9800102046/2022,BA.5.1.33 France/CVL-ChuTo-9800102009/2022,BA.5.1.33 Hungary/118077-UPL22-005805/2022,BA.5.1.33 Hungary/118078-UPL22-005806/2022,BA.5.1.33 -RNA,BA.5.1.33 Slovakia/BA_22_00041004/2022,BA.5.1.33 NewZealand/22XA6117/2022,BA.5.1.33 Italy/SIC-CQRC-3422066041-2022/2022,BA.5.1.33 @@ -2153814,7 +2153609,6 @@ Denmark/DCGC-601107/2022,BA.5.1.34 Denmark/DCGC-601530/2022,BA.5.1.34 Denmark/DCGC-583473/2022,BA.5.1.34 Denmark/DCGC-605501/2022,BA.5.1.34 -Denmark/2022,BA.5.1.34 Denmark/DCGC-606365/2022,BA.5.1.34 Denmark/DCGC-607775/2022,BA.5.1.34 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["AY.29","B.1.1.7"],