diff --git a/lineage_notes.txt b/lineage_notes.txt index 1fd66b83..5a69c069 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1341,6 +1341,7 @@ JN.1.16.3 Alias of B.1.1.529.2.86.1.1.16.3, S:T572I JN.1.16.4 Alias of B.1.1.529.2.86.1.1.16.4, S:Q493E, ORF1a:G400S, ORF7a:F59K, East Asia MT.1 Alias of B.1.1.529.2.86.1.1.16.4.1, S:S31P, N:P279S JN.1.16.5 Alias of B.1.1.529.2.86.1.1.16.5, S:T22N, S:Q493E +NF.1 Alias of B.1.1.529.2.86.1.1.16.5.1, S:S31P JN.1.17 Alias of B.1.1.529.2.86.1.1.17, S:A222V, USA JN.1.18 Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 JN.1.18.1 Alias of B.1.1.529.2.86.1.1.18.1, S:T250N, from sars-cov-2-variants/lineage-proposals#1414 diff --git a/lineages.csv b/lineages.csv index 5061c73c..67c997c6 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2569084,7 +2569084,6 @@ USA/NY-SUNYQB-X5818666/2024,KP.3.6 Canada/ON-KHS-03343-v1/2024,KP.3.6 Canada/ON-KHS-03577-v1/2024,KP.3.6 Canada/ON-KHS-03456-v1/2024,KP.3.6 -England/CLIMB-CM7Y8HHI/2024,JN.1.16.5 USA/WA-GBW-GKISBBBC08812/2024,JN.1.16.5 Israel/SMC-7117987/2024,JN.1.16.5 Israel/ICH-741202102/2024,JN.1.16.5 @@ -2569094,8 +2569093,6 @@ Sweden/S-1260965041VN/2024,JN.1.16.5 Netherlands/LI-RIVM-140318/2024,JN.1.16.5 Japan/EIS10-333/2024,JN.1.16.5 Netherlands/OV-RIVM-139476/2024,JN.1.16.5 -Sweden/AB-01_SE100_24CS100521/2024,JN.1.16.5 -Sweden/AB-01_SE100_24CS100503/2024,JN.1.16.5 Sweden/AB-01_SE100_24CS501021/2024,JN.1.16.5 Sweden/AB-01_SE100_24CS500980/2024,JN.1.16.5 Sweden/AB-01_SE100_24CS501001/2024,JN.1.16.5 @@ -2576824,8 +2576821,6 @@ France/BFC-IPP11095/2024,NE.1 Denmark/DCGC-688950/2024,NE.1 Canada/SK-RRPL-738488/2024,XEN USA/PA-CDC-LC1122248/2024,XEN -India/OR-RMRC_B-ICMR-INSACOG-ILI-2634/2024,XEN -India/OR-RMRC_B-ICMR-INSACOG-ILI-2561/2024,XEN Singapore/R55MQ32/2024,XEN Singapore/R55MQ46/2024,XEN Singapore/R53MQ36/2024,XEN @@ -2576836,6 +2576831,120 @@ Qatar/NIC-47-VI-0070761/2024,XEN Taiwan/CDC-W40269/2024,XEN Singapore/R54MQ12/2024,XEN USA/NJ-CDC-QDX24342667/2024,XEN -USA/UT-UPHL-241004732157/2024,XEN USA/NY-GBW-GKPLAAAA16347/2024,XEN Australia/VIC-VIDRL-00015101/2024,XEN +France/PAC-RELAB-HCL724000518301/2024,NF.1 +Wales/CLIMB-CM7YE33Y/2024,NF.1 +France/GES-IPP10614/2024,NF.1 +France/GES-RELAB-IPP10039/2024,NF.1 +Spain/CL-COV49191/2024,NF.1 +Netherlands/UT-RIVM-141544/2024,NF.1 +Germany/BY-MVP-000024971/2024,NF.1 +Canada/ON-PHL-202416628/2024,NF.1 +USA/IVY-G88A66V4/2024,NF.1 +England/CLIMB-CM7YEHMU/2024,NF.1 +England/CLIMB-CM7Y8HHI/2024,NF.1 +England/CLIMB-CM7Y8FD8/2024,NF.1 +England/CLIMB-CM7YFB41/2024,NF.1 +Wales/CLIMB-CM7YM3RY/2024,NF.1 +Wales/CLIMB-CM7YKJEZ/2024,NF.1 +Sweden/X-42106344PK/2024,NF.1 +Sweden/AB-01_SE100_24CS100844/2024,NF.1 +Sweden/AB-01_SE100_24CS100805/2024,NF.1 +Sweden/AB-01_SE100_24CS501242/2024,NF.1 +Sweden/AB-01_SE100_24CS501901/2024,NF.1 +Sweden/O-24-DE-13624/2024,NF.1 +France/ARA-RELAB-HCL724000456401/2024,NF.1 +USA/NJ-CDC-QDX23712488/2024,NF.1 +Sweden/O-2024-GX-4392/2024,NF.1 +Wales/CLIMB-CM7YKUKW/2024,NF.1 +Sweden/AB-01_SE100_24CS501701/2024,NF.1 +Sweden/M-SUS0023491/2024,NF.1 +Sweden/AB-01_SE100_24CS501539/2024,NF.1 +Sweden/AB-01_SE100_24CS501524/2024,NF.1 +Sweden/AB-01_SE100_24CS501409/2024,NF.1 +Sweden/AB-01_SE100_24CS100578/2024,NF.1 +Sweden/AB-01_SE100_24CS100581/2024,NF.1 +Sweden/AB-01_SE100_24CS501224/2024,NF.1 +Canada/QC-L00777924001/2024,NF.1 +Sweden/AB-01_SE100_24CS100503/2024,NF.1 +Sweden/AB-01_SE100_24CS501204/2024,NF.1 +Sweden/AB-01_SE100_24CS501413/2024,NF.1 +Sweden/AB-01_SE100_24CS100521/2024,NF.1 +Sweden/AB-01_SE100_24CS501515/2024,NF.1 +Denmark/DCGC-688581/2024,NF.1 +Sweden/04_SE100_24CS501566/2024,NF.1 +Sweden/01_SE100_24CS100672/2024,NF.1 +France/BFC-IPP10967/2024,NF.1 +Sweden/D-04_SE100_24CS501723/2024,NF.1 +Ireland/WD-NVRL-GIRL00065168/2024,NF.1 +France/ARA-HCL724000528501/2024,NF.1 +Sweden/AB-01_SE100_24CS501815/2024,NF.1 +Sweden/AB-01_SE100_24CS501777/2024,NF.1 +Sweden/C-000200781131N2/2024,NF.1 +Sweden/O-24-DE-11520/2024,NF.1 +Sweden/M-SUS0023412/2024,NF.1 +Sweden/M-SUS0023360/2024,NF.1 +Sweden/D-04_SE100_24CS501941/2024,NF.1 +Sweden/D-04_SE100_24CS501727/2024,NF.1 +Sweden/C-000200778155N2/2024,NF.1 +Sweden/C-000200773662N2/2024,NF.1 +Sweden/AB-01_SE100_24CS100800/2024,NF.1 +Sweden/AB-01_SE100_24CS100776/2024,NF.1 +Canada/ON-PHL-202416172/2024,NF.1 +Wales/CLIMB-CM7YM1YS/2024,NF.1 +Sweden/AB-01_SE100_24CS501962/2024,NF.1 +Sweden/AB-01_SE100_24CS501963/2024,NF.1 +Denmark/DCGC-689617/2024,NF.1 +Denmark/DCGC-689604/2024,NF.1 +Sweden/AB-01_SE100_24CS100756/2024,NF.1 +Sweden/C-000200774320N2/2024,NF.1 +Sweden/C-000200768856N2/2024,NF.1 +Sweden/C-000200776785N2/2024,NF.1 +Sweden/C-000200773664N2/2024,NF.1 +Sweden/I-09_SE100_24CS100746/2024,NF.1 +Sweden/C-000200760981N2/2024,NF.1 +Sweden/C-000200761023N2/2024,NF.1 +Sweden/C-000200760984N2/2024,NF.1 +Sweden/C-000200761745N2/2024,NF.1 +Sweden/C-000200780067N2/2024,NF.1 +Sweden/C-000200778220N2/2024,NF.1 +Sweden/C-000200778350N2/2024,NF.1 +Sweden/C-000200780063N2/2024,NF.1 +Sweden/C-000200780049N2/2024,NF.1 +Sweden/24-065909/2024,NF.1 +Sweden/BD-2A93768330000/2024,NF.1 +Sweden/H-24-065929/2024,NF.1 +Sweden/24-071636/2024,NF.1 +Sweden/H-24-071282/2024,NF.1 +Sweden/H-24-064553/2024,NF.1 +Sweden/24-064501/2024,NF.1 +Sweden/24-064515/2024,NF.1 +Sweden/O-24-DH-5831/2024,NF.1 +Sweden/O-2024-CO-510/2024,NF.1 +Netherlands/NH-RIVM-141352/2024,NF.1 +Canada/ON-PHL-202417211/2024,NF.1 +Scotland/CLIMB-CM7Y874J/2024,NF.1 +Sweden/O-GX-4053/2024,NF.1 +Sweden/T-23251758/2024,NF.1 +Sweden/U-R740648/2024,NF.1 +Sweden/U-R740646/2024,NF.1 +Sweden/D-04_SE100_24CS501821/2024,NF.1 +Sweden/U-R709641/2024,NF.1 +Sweden/U-R710809/2024,NF.1 +Sweden/R707760/2024,NF.1 +Sweden/01_SE100_24CS100694/2024,NF.1 +Sweden/AB-01_SE100_24CS501381/2024,NF.1 +Sweden/AB-01_SE100_24CS100796/2024,NF.1 +Singapore/R55MQ55/2024,NF.1 +Sweden/O-CIRA-105279/2024,NF.1 +Sweden/AB-01_SE100_24CS100781/2024,NF.1 +Sweden/AB-01_SE100_24CS100760/2024,NF.1 +Sweden/AB-01_SE100_24CS501748/2024,NF.1 +Sweden/X-42100787PL/2024,NF.1 +Sweden/AB-01_SE100_24CS501694/2024,NF.1 +Sweden/01_SE100_24CS100713/2024,NF.1 +Sweden/01_SE100_24CS100686/2024,NF.1 +Denmark/DCGC-689637/2024,NF.1 +Denmark/DCGC-689552/2024,NF.1 +Scotland/CLIMB-CM7YJDXP/2024,NF.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index b8b4a313..ef2379e3 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -297,6 +297,7 @@ "NC": "B.1.1.529.2.86.1.1.13.1.1.1.1", "ND": "B.1.1.529.2.86.1.1.16.1.8.1.1", "NE": "B.1.1.529.2.86.1.1.11.1.1.1.6", + "NF": "B.1.1.529.2.86.1.1.16.5", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],