From e7ee3c54487cc2c3ab5218f66b181bafd223762f Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Wed, 18 Oct 2023 18:49:33 +0200 Subject: [PATCH] Designate XDA (Recombinant lineage of XBB.1.16, HN.5 (breakpoint 22102-22927), from sars-cov-2-variants/lineage-proposals#862) Resolves sars-cov-2-variants/lineage-proposals#862 --- lineage_notes.txt | 1 + lineages.csv | 54 ++++++++++++++++++++++++++++++++ pango_designation/alias_key.json | 4 ++- 3 files changed, 58 insertions(+), 1 deletion(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 5e619f08..713213fd 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -3575,6 +3575,7 @@ XCV Recombinant lineage of XBB.1.16.19, EG.5.1.3, XBB.1.16.19 (breakpoints 9694- XCW Recombinant lineage of XBB.2.3.20, XBB.1.16.15 (breakpoint 22996-27430), India/USA from #2260 XCY Recombinant lineage of EG.5.1.3, GK.4 (or GK.3.1) (breakpoint 21719-22569), France, from sars-cov-2-variants/lineage-proposals#887 XCZ Recombinant lineage of EG.5.1.1, GK.1.1 (breakpoint 18492-21718), France/Italy/England +XDA Recombinant lineage of XBB.1.16, HN.5 (breakpoint 22102-22927), from sars-cov-2-variants/lineage-proposals#862 *A.2.1 Withdrawn: Lineage with sequences predominantly from Panama *A.8 Withdrawn: Indian lineage merged with A.9 *A.10 Withdrawn: Spanish lineage reassigned to A.5 diff --git a/lineages.csv b/lineages.csv index fa84c7db..0f14a9ce 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2480130,3 +2480130,57 @@ England/CLIMB-CM7YEGGS/2023,XCT Luxembourg/LNS9127578/2023,XCT Luxembourg/LNS5551721/2023,XCT Luxembourg/LNS0379582/2023,XCT +USA/CA-CDC-VSX-A357262/2023,XDA +USA/VA-GBW-H20-333-0901/2023,XDA +USA/VA-GBW-H20-333-0983/2023,XDA +Scotland/CLIMB-CM7Y89P1/2023,XDA +England/CLIMB-CM7YG16Z/2023,XDA +England/CLIMB-CM7YMGKY/2023,XDA +England/CLIMB-CM7YMZ4O/2023,XDA +England/CLIMB-CM7YMDA6/2023,XDA +Denmark/DCGC-661024/2023,XDA +Montenegro/2224/2023,XDA +Denmark/DCGC-659382/2023,XDA +Sweden/M-SUS0021637/2023,XDA +Sweden/M-SUS0021524/2023,XDA +Sweden/M-SUS0021555/2023,XDA +Sweden/M-SUS0021707/2023,XDA +Sweden/M-SUS0021687/2023,XDA +Singapore/R71MR117/2023,XDA +Israel/ICH-741199425/2023,XDA +Belgium/UZB_548091913/2023,XDA +Australia/NSW-ICPMR-48987/2023,XDA +Belgium/UCL_H-253G0001/2023,XDA +Canada/ON-PHL-23-31705/2023,XDA +Canada/ON-PHL-23-32533/2023,XDA +Canada/ON-PHL-23-32404/2023,XDA +Canada/ON-PHL-23-32535/2023,XDA +Canada/ON-PHL-23-32980/2023,XDA +Canada/ON-PHL-23-33992/2023,XDA +Canada/ON-PHL-23-33973/2023,XDA +Canada/ON-PHL-23-33555/2023,XDA +Canada/ON-PHL-23-32401/2023,XDA +Canada/ON-PHL-23-31880/2023,XDA +Canada/ON-PHL-23-32398/2023,XDA +Canada/AB-ABPHL-103521/2023,XDA +Canada/ON-PHL-23-31711/2023,XDA +Canada/ON-PHL-23-31706/2023,XDA +Canada/ON-PHL-23-30509/2023,XDA +Canada/ON-PHL-23-31392/2023,XDA +Canada/ON-PHL-23-31876/2023,XDA +Canada/ON-PHL-23-31372/2023,XDA +Canada/ON-PHL-23-31707/2023,XDA +Canada/ON-PHL-23-31380/2023,XDA +Canada/ON-PHL-23-32303/2023,XDA +Canada/ON-PHL-23-31881/2023,XDA +Canada/ON-PHL-23-31708/2023,XDA +Canada/ON-PHL-23-32566/2023,XDA +Canada/AB-ABPHL-102548/2023,XDA +Canada/AB-ABPHL-102824/2023,XDA +Canada/ON-PHL-23-32396/2023,XDA +Canada/ON-PHL-23-32395/2023,XDA +Canada/ON-PHL-23-33146/2023,XDA +Canada/ON-PHL-23-32989/2023,XDA +Canada/ON-PHL-23-31710/2023,XDA +Canada/ON-PHL-23-32405/2023,XDA +Canada/ON-PHL-23-32981/2023,XDA diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index a214eeb2..f815a6b8 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -314,6 +314,8 @@ "XCU": ["XBC.1.7.1","FL.23.2.1"], "XCV": ["XBB.1.16.19","EG.5.1.3","XBB.1.16.19"], "XCW": ["XBB.2.3.20","XBB.1.16.15"], - "XCY": ["EG.5.1.3","GK.4"] + "XCY": ["EG.5.1.3","GK.4"], + "XCZ": ["EG.5.1.1","GK.1.1"], + "XDA": ["XBB.1.16","HN.5"] }