diff --git a/lineage_notes.txt b/lineage_notes.txt index 84efc305..2bbda088 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -3021,6 +3021,7 @@ FL.33 Alias of XBB.1.9.1.33, ORF1b:A1377V FL.33.1 Alias of XBB.1.9.1.33.1, S:478R, Georgia, from sars-cov-2-variants/lineage-proposals#828 FL.34 Alias of XBB.1.9.1.34, S:D1118Y FL.35 Alias of XBB.1.9.1.35, ORF8:S103L, South Africa +FL.35.1 Alias of XBB.1.9.1.35.1, S:478R, South Africa FL.36 Alias of XBB.1.9.1.36, S:76I, S:190S, S:356T, S:572I, S:899S, S:1070T, England/US/Denmark, sars-cov-2-variants/lineage-proposals#805 XBB.1.9.2 S:F486P (after 27507C, 16878T), Indonesia/Singaporeļ¼Œfrom #1602 EG.1 Alias of XBB.1.9.2.1, S:Q613H on N:L219F branch, from #1664 and https://github.com/jmcbroome/auto-pango-designation/pull/193 @@ -3068,6 +3069,7 @@ HK.7 Alias of XBB.1.9.2.5.1.1.7, S:N148T, China HK.8 Alias of XBB.1.9.2.5.1.1.8, S:L455F, on C11779T branch, China, from #2230 HK.9 Alias of XBB.1.9.2.5.1.1.9, S:R190K, on C11779T branch, England, from sars-cov-2-variants/lineage-proposals#564 HK.11 Alias of XBB.1.9.2.5.1.1.11, S:G184S, China/England/SouthKorea, from #2255 +HK.11.1 Alias of XBB.1.9.2.5.1.1.11.1, S:L455F (G22927T) HK.12 Alias of XBB.1.9.2.5.1.1.12, S:K356T, China/Singapore HK.13 Alias of XBB.1.9.2.5.1.1.13, S:L455F (G22927C), China HK.13.1 Alias of XBB.1.9.2.5.1.1.13.1, C13378T, A24604G diff --git a/lineages.csv b/lineages.csv index fea12a06..aa8b4066 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2465040,26 +2465040,6 @@ NewZealand/ESR-YA4580/2023,FL.35 NewZealand/ESR-YA4389/2023,FL.35 NewZealand/ESR-YA4493/2023,FL.35 NewZealand/ESR-YA4474/2023,FL.35 -Austria/AGES-1140357/2023,FL.35 -Austria/AGES-1139935/2023,FL.35 -SouthAfrica/NICD-N56087/2023,FL.35 -USA/UT-CDC-2-7250144/2023,FL.35 -USA/UT-UPHL-230805810904/2023,FL.35 -SouthAfrica/CERI-KRISP-K058087/2023,FL.35 -USA/NJ-GBW-H20-316-2358/2023,FL.35 -USA/VA-GBW-H10-015-6519/2023,FL.35 -USA/VA-GBW-H20-310-7171/2023,FL.35 -Australia/WA14456/2023,FL.35 -Australia/WA14939/2023,FL.35 -Australia/WA14932/2023,FL.35 -Australia/WA15119/2023,FL.35 -Australia/WA14933/2023,FL.35 -Australia/WA15128/2023,FL.35 -Australia/WA14860/2023,FL.35 -Australia/SA569837/2023,FL.35 -Australia/SA569827/2023,FL.35 -Australia/SA578785/2023,FL.35 -Australia/SA544023/2023,FL.35 CHN/GDCDC_FS_0072/2023,FL.35 CHN/GDCDC_SZHG_1122/2023,FL.35 CHN/GDCDC_GZHG_1134/2023,FL.35 @@ -2476807,3 +2476787,81 @@ Singapore/R68MR24/2023,HK.3.7 Hubei/HCDC-YC3146/2023,HK.3.7 Singapore/R71MR5/2023,HK.3.7 Singapore/R72MR219/2023,HK.3.7 +Italy/EMR_AUSLRomagna_C039-23-22/2023,HK.11.1 +France/ARA-HCL723001089501/2023,HK.11.1 +USA/TX-HMH-M-133902/2023,HK.11.1 +Italy/VEN-AOUIVR-7317305301_VR/2023,HK.11.1 +USA/IN-CDC-QDX85771160/2023,HK.11.1 +France/PAC-HCL-723001289501/2023,HK.11.1 +USA/TX-KVI202001/2023,HK.11.1 +Switzerland/GE-HUG-42699817/2023,HK.11.1 +Switzerland/GE-HUG-42707248/2023,HK.11.1 +Denmark/DCGC-659877/2023,HK.11.1 +USA/DE-DHSS-B1308991/2023,HK.11.1 +Denmark/DCGC-659258/2023,HK.11.1 +Sweden/N-2A745818523/2023,HK.11.1 +Norway/Ahus-4829/2023,HK.11.1 +USA/TX-HMH-M-132695/2023,HK.11.1 +Denmark/DCGC-659072/2023,HK.11.1 +Italy/EMR-BO_2949/2023,HK.11.1 +USA/TX-HMH-M-133901/2023,HK.11.1 +Denmark/DCGC-659058/2023,HK.11.1 +USA/DE-DHSS-B1261830/2023,HK.11.1 +USA/DE-DHSS-B1308984/2023,HK.11.1 +Denmark/DCGC-659615/2023,HK.11.1 +Denmark/DCGC-659707/2023,HK.11.1 +Denmark/DCGC-659602/2023,HK.11.1 +Italy/EMR-BO_3011/2023,HK.11.1 +Italy/EMR-BO_2996/2023,HK.11.1 +CanaryIslands/CHUIMI-021437099990/2023,HK.11.1 +Germany/NW-RKI-I-1138088/2023,HK.11.1 +Israel/ICH-741199322/2023,HK.11.1 +Israel/SMC-7115360/2023,HK.11.1 +Israel/SMC-7115606/2023,HK.11.1 +Belgium/LHUB-ULB_O46PGK/2023,HK.11.1 +Belgium/UZB_54810096/2023,HK.11.1 +Belgium/UZB_54810099/2023,HK.11.1 +USA/WA-GBW-H20-335-8886/2023,HK.11.1 +USA/WA-GBW-H10-016-9909/2023,HK.11.1 +Denmark/DCGC-659867/2023,HK.11.1 +Denmark/DCGC-659569/2023,HK.11.1 +Italy/CAM_20505413722_IZSM_COLLI_TIGEM/2023,HK.11.1 +Italy/UMB-LAOP-133-2-29/2023,HK.11.1 +SouthKorea/KDCA264010/2023,HK.11.1 +Ireland/D-BH-970128230/2023,HK.11.1 +Netherlands/LI-RIVM-131664/2023,HK.11.1 +Denmark/DCGC-660994/2023,HK.11.1 +Netherlands/NH-RIVM-131510/2023,HK.11.1 +Netherlands/NH-RIVM-131337/2023,HK.11.1 +France/ARA-HCL723001149601/2023,HK.11.1 +France/ARA-HCL123034258501/2023,HK.11.1 +France/ARA-HCL023145566001/2023,HK.11.1 +France/BFC-IPP22231/2023,HK.11.1 +England/CLIMB-CM7YGSSO/2023,HK.11.1 +France/ARA-HCL-023151632701/2023,HK.11.1 +France/ARA-HCL023148075301/2023,HK.11.1 +Italy/LOM_Policlinico_Milano_87902686/2023,HK.11.1 +France/ARA-HCL023148534301/2023,HK.11.1 +Austria/AGES-1140357/2023,FL.35.1 +Austria/AGES-1139935/2023,FL.35.1 +SouthAfrica/ZARV-NHLS-0050/2023,FL.35.1 +SouthAfrica/NICD-N56087/2023,FL.35.1 +USA/UT-CDC-2-7250144/2023,FL.35.1 +USA/UT-UPHL-230805810904/2023,FL.35.1 +SouthAfrica/NICD-R09731/2023,FL.35.1 +SouthAfrica/NICD-N56119/2023,FL.35.1 +SouthAfrica/CERI-KRISP-K058087/2023,FL.35.1 +USA/NJ-GBW-H20-316-2358/2023,FL.35.1 +USA/VA-GBW-H10-015-6519/2023,FL.35.1 +USA/VA-GBW-H20-310-7171/2023,FL.35.1 +Australia/WA14456/2023,FL.35.1 +Australia/WA14939/2023,FL.35.1 +Australia/WA14932/2023,FL.35.1 +Australia/WA15119/2023,FL.35.1 +Australia/WA14933/2023,FL.35.1 +Australia/WA15128/2023,FL.35.1 +Australia/WA14860/2023,FL.35.1 +Australia/SA569837/2023,FL.35.1 +Australia/SA569827/2023,FL.35.1 +Australia/SA578785/2023,FL.35.1 +Australia/SA544023/2023,FL.35.1