diff --git a/lineage_notes.txt b/lineage_notes.txt index b976abc7..0d4b0184 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1309,6 +1309,7 @@ BQ.1.1.20 Alias of B.1.1.529.5.3.1.1.1.1.1.1.20, Denmark, S:144- and ORF3a:H204Y BQ.1.1.21 Alias of B.1.1.529.5.3.1.1.1.1.1.1.21, Switzerland/France, S:144- and A17946G BQ.1.1.22 Alias of B.1.1.529.5.3.1.1.1.1.1.1.22, Australia/England/Denmark, S:144- and C913A ER.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.22.1 found mainly in UK, from pango-designation issue #1492 +ER.1.1 B.1.1.529.5.3.1.1.1.1.1.1.22.1.1 found mainly in UK, from pango-designation issue #1715 BQ.1.1.23 Alias of B.1.1.529.5.3.1.1.1.1.1.1.23, France, ORF3a:V97I, S:Y144-, on G6421T branch BQ.1.1.24 Alias of B.1.1.529.5.3.1.1.1.1.1.1.24, England, 11941T, S:Y144- BQ.1.1.25 Alias of B.1.1.529.5.3.1.1.1.1.1.1.25, USA/Canada, S:F490S and S:Y144-, from issue #1350 diff --git a/lineages.csv b/lineages.csv index bd506d77..00b272f3 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2232385,11 +2232385,11 @@ England/PHEC-YY89JDM/2023,BQ.1.1.71 USA/VA-GBW-H20-295-4939/2023,XBB.1.16 Germany/BY-RKI-I-1104685/2023,XBB.1.16 USA/NY-CDC-814743580/2023,XBB.1.16 -England/BRBR-326B794A/2023,ER.1 -England/BRBR-326CA908/2023,ER.1 +England/BRBR-326B794A/2023,ER.1.1 +England/BRBR-326CA908/2023,ER.1.1 England/PHEC-YY81B46/2022,ER.1 England/LSPA-3268970B/2023,ER.1 -England/QEUH-32646C47/2022,ER.1 +England/QEUH-32646C47/2022,ER.1.1 England/LSPA-3266F96F/2022,ER.1 England/QEUH-326B62E6/2023,ER.1 England/LSPA-32626D2C/2022,ER.1 @@ -2232397,24 +2232397,24 @@ England/PHEC-YY8CUBC/2022,ER.1 Wales/PHWC-PKJ7CI/2022,ER.1 England/PHEC-YY8AJ4K/2022,ER.1 England/LSPA-32670A86/2022,ER.1 -England/BRBR-326C4D11/2023,ER.1 -England/PHEC-YY84Q9Z/2023,ER.1 +England/BRBR-326C4D11/2023,ER.1.1 +England/PHEC-YY84Q9Z/2023,ER.1.1 England/PHEC-YY8ZBI6/2022,ER.1 -USA/LA-CDC-STM-9RG8TB6JW/2023,ER.1 +USA/LA-CDC-STM-9RG8TB6JW/2023,ER.1.1 England/LSPA-325FB583/2022,ER.1 England/LSPA-3262723B/2022,ER.1 -England/QEUH-32680DA8/2022,ER.1 +England/QEUH-32680DA8/2022,ER.1.1 England/BRBR-326A68BA/2023,ER.1 England/BRBR-326A6AF0/2023,ER.1 England/LSPA-326819C1/2023,ER.1 England/PHEC-YY8HOHZ/2023,ER.1 Wales/QEUH-326A1FAB/2023,ER.1 England/PHEC-YY8U6FK/2022,ER.1 -England/BRBR-326C487A/2023,ER.1 +England/BRBR-326C487A/2023,ER.1.1 England/QEUH-32695DBF/2023,ER.1 Sweden/SUS0020478/2023,ER.1 England/PHEC-YYEBNRC/2023,ER.1 -England/BRBR-326CCAB8/2023,ER.1 +England/BRBR-326CCAB8/2023,ER.1.1 Sweden/SUS0020450/2023,ER.1 England/BRBR-3263A174/2022,ER.1 Poland/0105WSN2023_wsseol/2023,ER.1 @@ -2232422,15 +2232422,15 @@ England/BRBR-326A46A3/2023,ER.1 England/PHEC-YY875W4/2023,ER.1 Scotland/SCOT-24117/2023,ER.1 Wales/QEUH-3263E495/2022,ER.1 -England/BRBR-326C66F6/2023,ER.1 +England/BRBR-326C66F6/2023,ER.1.1 England/QEUH-326A0F42/2023,ER.1 England/PHEC-YY8141I/2022,ER.1 England/PHEC-YY8QK3Y/2022,ER.1 Sweden/SUS0020549/2023,ER.1 -England/BRBR-326CA9CC/2023,ER.1 -England/BRBR-326CA8B0/2023,ER.1 -England/LSPA-3266C768/2022,ER.1 -England/PHEC-YY84XHH/2023,ER.1 +England/BRBR-326CA9CC/2023,ER.1.1 +England/BRBR-326CA8B0/2023,ER.1.1 +England/LSPA-3266C768/2022,ER.1.1 +England/PHEC-YY84XHH/2023,ER.1.1 Sweden/SUS0019982/2023,ER.1 England/BRBR-326A6744/2023,ER.1 England/PHEC-YYENIUA/2023,ER.1 @@ -2232439,103 +2232439,103 @@ England/LSPA-3263EE00/2022,ER.1 England/PHEC-YY84BQ8/2022,ER.1 England/QEUH-326A162E/2023,ER.1 England/BRBR-326A45D3/2023,ER.1 -England/PHEC-YYEBNGE/2023,ER.1 +England/PHEC-YYEBNGE/2023,ER.1.1 Sweden/SUS0020308/2023,ER.1 Sweden/SUS0020700/2023,ER.1 -England/LSPA-326656CC/2022,ER.1 +England/LSPA-326656CC/2022,ER.1.1 Ireland/D-NVRL-S23IRL00000911/2023,ER.1 England/PHEC-YY87E1T/2022,ER.1 England/BRBR-3268B165/2023,ER.1 England/BRBR-326A6902/2023,ER.1 England/BRBR-326A3B0F/2023,ER.1 -England/LSPA-32680959/2023,ER.1 +England/LSPA-32680959/2023,ER.1.1 England/PHEC-YY8QN1S/2022,ER.1 Wales/PHWC-PKM5CU/2023,ER.1 -England/BRBR-326CB785/2023,ER.1 +England/BRBR-326CB785/2023,ER.1.1 Scotland/QEUH-32691E74/2022,ER.1 -England/PHEC-YYEYG55/2023,ER.1 -England/PHEP-YYGJDEI/2023,ER.1 +England/PHEC-YYEYG55/2023,ER.1.1 +England/PHEP-YYGJDEI/2023,ER.1.1 England/QEUH-32673898/2022,ER.1 England/BRBR-326A69B7/2023,ER.1 -England/LSPA-3267F45C/2023,ER.1 +England/LSPA-3267F45C/2023,ER.1.1 England/PHEP-YYGJ4SB/2023,ER.1 England/BRBR-326A679F/2023,ER.1 England/BRBR-326A453D/2023,ER.1 England/BRBR-32692426/2023,ER.1 Wales/PHWC-PKMIZN/2023,ER.1 Wales/QEUH-3268D36D/2023,ER.1 -England/QEUH-3268BE40/2023,ER.1 +England/QEUH-3268BE40/2023,ER.1.1 England/PHEC-YY8PZBG/2022,ER.1 -England/LSPA-3267E4E4/2023,ER.1 +England/LSPA-3267E4E4/2023,ER.1.1 Germany/RP-RKI-I-1097627/2023,ER.1 England/LSPA-32616590/2022,ER.1 England/BRBR-326A446D/2023,ER.1 Wales/PHWC-PKJI1O/2022,ER.1 -England/BRBR-326CB15A/2023,ER.1 +England/BRBR-326CB15A/2023,ER.1.1 England/BRBR-326AA722/2023,ER.1 England/BRBR-326A456A/2023,ER.1 England/PHEC-YY8CWBM/2022,ER.1 England/LSPA-32617711/2022,ER.1 England/LSPA-3266F61D/2022,ER.1 England/QEUH-32682A90/2022,ER.1 -England/BRBR-326C4A38/2023,ER.1 -England/BRBR-326CEFA8/2023,ER.1 +England/BRBR-326C4A38/2023,ER.1.1 +England/BRBR-326CEFA8/2023,ER.1.1 England/BRBR-326A20C5/2023,ER.1 -England/LSPA-3269850F/2023,ER.1 -England/PHEC-YYEB7IQ/2023,ER.1 +England/LSPA-3269850F/2023,ER.1.1 +England/PHEC-YYEB7IQ/2023,ER.1.1 Sweden/SUS0020471/2023,ER.1 England/PHEC-YY8AD4O/2022,ER.1 England/BRBR-326A463A/2023,ER.1 England/BRBR-326C9F25/2023,ER.1 -England/PHEC-YYEB6WX/2023,ER.1 +England/PHEC-YYEB6WX/2023,ER.1.1 England/PHEC-YYEN9IK/2022,ER.1 -England/BRBR-326A6B1B/2023,ER.1 +England/BRBR-326A6B1B/2023,ER.1.1 Sweden/SUS0020430/2023,ER.1 Sweden/SUS0020566/2023,ER.1 -England/BRBR-326C4C14/2023,ER.1 -England/BRBR-326CB0B7/2023,ER.1 -Wales/QEUH-326B48AA/2023,ER.1 +England/BRBR-326C4C14/2023,ER.1.1 +England/BRBR-326CB0B7/2023,ER.1.1 +Wales/QEUH-326B48AA/2023,ER.1.1 England/PHEC-YY8WKPC/2022,ER.1 Wales/PHWC-PKJO79/2022,ER.1 -England/LSPA-3266E371/2022,ER.1 -England/PHEC-YY8I5WK/2022,ER.1 -England/LSPA-3267F920/2023,ER.1 +England/LSPA-3266E371/2022,ER.1.1 +England/PHEC-YY8I5WK/2022,ER.1.1 +England/LSPA-3267F920/2023,ER.1.1 Sweden/SUS0020148/2023,ER.1 England/PHEC-YY81J9C/2022,ER.1 Israel/ICH-741195096/2022,ER.1 England/BRBR-326A4306/2023,ER.1 Austria/MUIV-1124/2023,ER.1 -England/PHEC-YYENAYH/2023,ER.1 +England/PHEC-YYENAYH/2023,ER.1.1 England/BRBR-326AA87A/2023,ER.1 -England/QEUH-32656673/2022,ER.1 -England/PHEC-YYENSKK/2023,ER.1 +England/QEUH-32656673/2022,ER.1.1 +England/PHEC-YYENSKK/2023,ER.1.1 England/QEUH-326A058C/2023,ER.1 England/BRBR-32639A3E/2022,ER.1 England/PHEC-YY8IUNZ/2022,ER.1 England/LSPA-3266FBC3/2022,ER.1 -England/PHEC-YYEBKBK/2023,ER.1 +England/PHEC-YYEBKBK/2023,ER.1.1 England/PHEC-YY8PUA5/2022,ER.1 England/BRBR-326A6771/2023,ER.1 England/BRBR-326A6AE1/2023,ER.1 England/BRBR-326AA573/2023,ER.1 England/PHEC-YY8H7XF/2023,ER.1 England/PHEC-YY8Q8KN/2022,ER.1 -England/PHEC-YYEBE7U/2023,ER.1 +England/PHEC-YYEBE7U/2023,ER.1.1 England/PHEC-YY8HKOI/2023,ER.1 -England/PHEC-YYENH3F/2023,ER.1 -England/PHEC-YYENSEQ/2023,ER.1 +England/PHEC-YYENH3F/2023,ER.1.1 +England/PHEC-YYENSEQ/2023,ER.1.1 England/PHEC-YY81QNN/2022,ER.1 England/PHEC-YY84ORC/2022,ER.1 Wales/PHWC-PKJ1JG/2022,ER.1 England/BRBR-326A454C/2023,ER.1 -England/QEUH-326D2F56/2023,ER.1 -England/QEUH-32696B69/2023,ER.1 -England/PHEC-YYEBNFK/2023,ER.1 +England/QEUH-326D2F56/2023,ER.1.1 +England/QEUH-32696B69/2023,ER.1.1 +England/PHEC-YYEBNFK/2023,ER.1.1 England/PHEC-YY81G7U/2022,ER.1 Germany/BY-RKI-I-1104519/2023,ER.1 England/BRBR-326AA94A/2023,ER.1 -England/PHEC-YY89SW5/2023,ER.1 -England/PHEP-YYGEAEN/2023,ER.1 +England/PHEC-YY89SW5/2023,ER.1.1 +England/PHEP-YYGEAEN/2023,ER.1.1 England/PHEC-YY8PUIB/2022,ER.1 England/BRBR-3268B675/2023,ER.1 England/LSPA-3266F5D4/2022,ER.1 @@ -2232544,51 +2232544,51 @@ England/BRBR-326A696C/2023,ER.1 England/PHEC-YYENZT4/2023,ER.1 Scotland/SCOT-25266/2023,ER.1 England/LSPA-32602209/2022,ER.1 -England/LSPA-32697E6F/2023,ER.1 +England/LSPA-32697E6F/2023,ER.1.1 England/QEUH-3269E141/2023,ER.1 England/QEUH-326BFF7D/2023,ER.1 -England/PHEC-YY8AHP1/2023,ER.1 -England/QEUH-326A9B81/2023,ER.1 +England/PHEC-YY8AHP1/2023,ER.1.1 +England/QEUH-326A9B81/2023,ER.1.1 England/LSPA-3261723E/2022,ER.1 -England/PHEC-YY8757E/2023,ER.1 -England/QEUH-326AD947/2023,ER.1 +England/PHEC-YY8757E/2023,ER.1.1 +England/QEUH-326AD947/2023,ER.1.1 England/LSPA-32616B07/2022,ER.1 Sweden/SUS0020056/2023,ER.1 England/BRBR-326AB82E/2023,ER.1 -England/PHEC-YY8H8AE/2023,ER.1 -England/PHEC-YYEY3HG/2023,ER.1 +England/PHEC-YY8H8AE/2023,ER.1.1 +England/PHEC-YYEY3HG/2023,ER.1.1 England/PHEC-YY8U74Y/2022,ER.1 Wales/PHWC-PKJPDZ/2022,ER.1 Scotland/SCOT-25242/2023,ER.1 England/LSPA-3262774B/2022,ER.1 -England/PHEP-YYGKGT7/2023,ER.1 +England/PHEP-YYGKGT7/2023,ER.1.1 England/QEUH-32640296/2022,ER.1 -England/BRBR-326CB7B2/2023,ER.1 +England/BRBR-326CB7B2/2023,ER.1.1 England/LSPA-3266F835/2022,ER.1 -England/BRBR-326C4DC6/2023,ER.1 -England/BRBR-326CCC1C/2023,ER.1 -England/LSPA-32681D2F/2023,ER.1 +England/BRBR-326C4DC6/2023,ER.1.1 +England/BRBR-326CCC1C/2023,ER.1.1 +England/LSPA-32681D2F/2023,ER.1.1 England/LSPA-325FC397/2022,ER.1 England/PHEC-YY84RO9/2023,ER.1 England/PHEC-YY87O8Y/2023,ER.1 England/PHEC-YY8CWFD/2022,ER.1 -England/PHEC-YYEB7SC/2023,ER.1 +England/PHEC-YYEB7SC/2023,ER.1.1 England/PHEC-YY8OAJQ/2022,ER.1 England/PHEC-YY81QXE/2022,ER.1 England/QEUH-32697870/2023,ER.1 Italy/LOM_ASSTMonza_6000209703_080800/2023,ER.1 Scotland/SCOT-24844/2023,ER.1 England/LSPA-3261790C/2022,ER.1 -England/PHEC-YY891XK/2023,ER.1 +England/PHEC-YY891XK/2023,ER.1.1 Wales/PHWC-PKJTSC/2022,ER.1 England/LSPA-325FBC06/2022,ER.1 -England/PHEC-YYENSME/2023,ER.1 +England/PHEC-YYENSME/2023,ER.1.1 England/BRBR-326A6AD2/2023,ER.1 England/LSPA-32681CD7/2023,ER.1 Scotland/QEUH-326A14AC/2023,ER.1 Wales/QEUH-3263F3E2/2022,ER.1 -England/PHEC-YYEBDED/2023,ER.1 -England/BRBR-326CC2ED/2023,ER.1 +England/PHEC-YYEBDED/2023,ER.1.1 +England/BRBR-326CC2ED/2023,ER.1.1 England/PHEC-YY8Q8EG/2022,ER.1 England/BRBR-326A3BE1/2023,ER.1 England/PHEC-YY84OCH/2023,ER.1 @@ -2232596,7 +2232596,7 @@ England/PHWC-PKK97Q/2022,ER.1 England/PHEP-YYGFDWR/2022,ER.1 Scotland/SCOT-22862/2022,ER.1 Wales/PHWC-PKJW9Z/2022,ER.1 -England/LSPA-3267F9A8/2023,ER.1 +England/LSPA-3267F9A8/2023,ER.1.1 England/PHEP-YYGEGXG/2023,ER.1 England/PHEP-YYG8QPR/2023,ER.1 England/QEUH-326AF7D2/2023,ER.1 @@ -2232604,10 +2232604,10 @@ England/LSPA-32626982/2022,ER.1 Wales/PHWC-PKMIQI/2023,ER.1 England/PHEC-YY8CM63/2022,ER.1 England/BRBR-326A6AA5/2023,ER.1 -Germany/BW-RKI-I-1095546/2023,ER.1 -England/LSPA-32620241/2022,ER.1 +Germany/BW-RKI-I-1095546/2023,ER.1.1 +England/LSPA-32620241/2022,ER.1.1 England/BRBR-326A6920/2023,ER.1 -England/BRBR-326C8F44/2023,ER.1 +England/BRBR-326C8F44/2023,ER.1.1 Wales/QEUH-3263240A/2022,ER.1 England/PHEC-YY8QFH9/2022,ER.1 Denmark/DCGC-642389/2023,XBB.1.16 @@ -2232627,4 +2232627,3 @@ England/PHEC-YYEGJYD/2023,XBB.1.16 England/PHEC-YYEDCW7/2023,XBB.1.16 England/PHEC-YYER6MH/2023,XBB.1.16 England/PHEC-YYEROMK/2023,XBB.1.16 -