From d7b0265b8f5d95db0be543300f7402653c1d7b09 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Fri, 24 Nov 2023 05:46:17 +0100 Subject: [PATCH] Designate XDG (Recombinant lineage of FL.37 and EG.5.2.4 (breakpoint at 6729-9693), from #2348) with 25 seqs Resolves #2348 --- lineage_notes.txt | 1 + lineages.csv | 27 +++++++++++++++++++++++++++ pango_designation/alias_key.json | 3 ++- 3 files changed, 30 insertions(+), 1 deletion(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 423f1b22..af8654b3 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -3612,6 +3612,7 @@ XDC Recombinant lineage of HK.3, XBB.1.16 (breakpoint 22996-27506), China/Singap XDD Recombinant lineage of EG.5.1.1, JN.1, EG.5.1.1 (breakpoints at 6541-7842 and 25416-26270), USA/France/Spain, from sars-cov-2-variants/lineage-proposals#1024 XDE Recombinant lineage of GW.5.1 and FL.13.4 (breakpoint at 24034-24046), Pakistan, from #2352 XDF Recombinant lineage of XBB* (with C335T) and EG.5.1.3 (breakpoint around 2335-9692), from sars-cov-2-variants/lineage-proposals#1088 +XDG Recombinant lineage of FL.37 and EG.5.2.4 (breakpoint at 6729-9693), from #2348 *A.2.1 Withdrawn: Lineage with sequences predominantly from Panama *A.8 Withdrawn: Indian lineage merged with A.9 *A.10 Withdrawn: Spanish lineage reassigned to A.5 diff --git a/lineages.csv b/lineages.csv index 26a7be91..c1ba13aa 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2483332,3 +2483332,30 @@ SouthKorea/KDCA257057/2023,FL.37 SouthKorea/KDCA244957/2023,FL.37 SouthKorea/KDCA246476/2023,FL.37 SouthKorea/KDCA244980/2023,FL.37 +Italy/VEN-IZSVe-23RS8189-5_VR/2023,XDG +Canada/ON-KHS-06696-v1/2023,XDG +USA/NY-URMC-N7S1K083-1/2023,XDG +Denmark/DCGC-659001/2023,XDG +Canada/BC-BCCDC-646778/2023,XDG +Greece/NPHO-7594/2023,XDG +France/ARA-HCL723001486201/2023,XDG +France/ARA-HCL723001400401/2023,XDG +France/ARA-HCL723001327401/2023,XDG +Italy/SIC-CQRC-3423018245/2023,XDG +Italy/SIC-CQRC-3423018240/2023,XDG +Italy/SIC-CQRC-3423018223/2023,XDG +Italy/SIC-CQRC-3423018199/2023,XDG +USA/CA-CDPH-500127423/2023,XDG +Italy/APU_UNIBA_APU-Ba1121/2023,XDG +Italy/APU_UNIBA_APU-Ba1116/2023,XDG +Italy/APU_UNIBA_APU-Ba1117/2023,XDG +USA/MN-CDC-VSX-A09290/2023,XDG +USA/CA-CDC-VSX-A356876/2023,XDG +USA/CA-CDC-QDX86463810/2023,XDG +USA/CA-LACPHL-AY03035/2023,XDG +USA/CA-CDC-QDX85929367/2023,XDG +USA/IVY-G43Q95A3/2023,XDG +USA/NY-CDC-QDX85770995/2023,XDG +USA/MN-CDC-VSX-A08862/2023,XDG +USA/NY-SUNYQB-X6631/2023,XDG +USA/NY-CDC-QDX85528248/2023,XDG diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 8a213371..8ed6917f 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -322,6 +322,7 @@ "XDC": ["HK.3","XBB.1.16"], "XDD": ["EG.5.1.1","JN.1","EG.5.1.1"], "XDE": ["GW.5.1","FL.13.4"], - "XDF": ["XBB*","EG.5.1.3"] + "XDF": ["XBB*","EG.5.1.3"], + "XDG": ["FL.37","EG.5.2.4"] }