From cd3327aeb5651a22ac15e0ca722718e210a83237 Mon Sep 17 00:00:00 2001
From: Cornelius Roemer <cornelius.roemer@gmail.com>
Date: Tue, 16 Jan 2024 19:35:17 +0100
Subject: [PATCH] Designate XDN (Recombinant lineage of JN.1.1 and JD.1
 (breakpoint between 24379 and 24989), from #2448)

Resolves #2448
---
 lineage_notes.txt                |  1 +
 lineages.csv                     | 38 ++++++++++++++++++++++++++++++++
 pango_designation/alias_key.json |  3 ++-
 3 files changed, 41 insertions(+), 1 deletion(-)

diff --git a/lineage_notes.txt b/lineage_notes.txt
index 57148367..66b633d4 100644
--- a/lineage_notes.txt
+++ b/lineage_notes.txt
@@ -3776,6 +3776,7 @@ XDJ	Recombinant lineage of XBB.1.16.6 and HK.3.1 (breakpoint between 14857 and 1
 XDK	Recombinant lineage of XBB.1.16.11 (likely) and JN.1.1.1 (breakpoint between 5315 and 6182), France, from #2415
 XDL	Recombinant lineage of EG.5.1.1 and non-EG.5 (breakpoint between 25573-29624) with S:L455F and S:I1114T, China, from #2351
 XDM	Recombinant lineage of XDA, GW.5, XDA (breakpoints between 22107-22926 and 24047-25838), from sars-cov-2-variants/lineage-proposals#1163
+XDN	Recombinant lineage of JN.1.1 and JD.1 (breakpoint between 24379 and 24989), from #2448
 *A.2.1	Withdrawn: Lineage with sequences predominantly from Panama
 *A.8	Withdrawn: Indian lineage merged with A.9
 *A.10	Withdrawn: Spanish lineage reassigned to A.5
diff --git a/lineages.csv b/lineages.csv
index 6316b17a..0b71a5cb 100644
--- a/lineages.csv
+++ b/lineages.csv
@@ -2518342,3 +2518342,41 @@ USA/CA-CDPH-500129602/2023,HK.34
 USA/CA-CDPH-500129607/2023,HK.34
 USA/CA-CDPH-500129572/2023,HK.34
 USA/CA-CDC-QDX88322340/2023,HK.34
+Wales/CLIMB-CM7YMWK9/2023,XDN
+England/CLIMB-CM7YKEXD/2023,XDN
+England/CLIMB-CM7YKKEU/2023,XDN
+Wales/CLIMB-CM7YE6HJ/2023,XDN
+England/CLIMB-CM7YEPY4/2023,XDN
+England/CLIMB-CM7YE7IO/2023,XDN
+England/CLIMB-CM7YF4K3/2024,XDN
+England/CLIMB-CM7YJPZS/2023,XDN
+England/CLIMB-CM7YEW1O/2024,XDN
+England/CLIMB-CM7YGGPO/2024,XDN
+England/CLIMB-CM7YG4PU/2023,XDN
+England/CLIMB-CM7YJ3C3/2023,XDN
+Wales/CLIMB-CM7YFGRU/2023,XDN
+Wales/CLIMB-CM7YMS95/2023,XDN
+Wales/CLIMB-CM7YJCYM/2023,XDN
+Wales/CLIMB-CM7YFM7J/2024,XDN
+Wales/CLIMB-CM7YEE47/2023,XDN
+USA/TX-HMH-M-137151/2023,XDN
+USA/TX-HMH-M-136863/2023,XDN
+England/CLIMB-CM7Y8RK8/2024,XDN
+England/CLIMB-CM7YE4NS/2024,XDN
+England/CLIMB-CM7YEUE9/2024,XDN
+England/CLIMB-CM7YKEP8/2023,XDN
+Wales/CLIMB-CM7YRXKI/2024,XDN
+England/CLIMB-CM7YKRDD/2023,XDN
+England/CLIMB-CM7YRHE5/2023,XDN
+England/CLIMB-CM7YG45I/2023,XDN
+England/CLIMB-CM7Y8TZO/2024,XDN
+England/CLIMB-CM7Y8FGS/2024,XDN
+USA/TX-HMH-M-136793/2023,XDN
+USA/TX-HMH-M-136813/2023,XDN
+Wales/CLIMB-CM7YR61T/2023,XDN
+Wales/CLIMB-CM7Y8GJZ/2023,XDN
+England/CLIMB-CM7YKPKK/2023,XDN
+England/CLIMB-CM7YFO8C/2023,XDN
+Wales/CLIMB-CM7YGFC4/2023,XDN
+Wales/CLIMB-CM7Y8U5A/2024,XDN
+Wales/CLIMB-CM7YRZ8C/2024,XDN
diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json
index f47ea87e..62a91870 100644
--- a/pango_designation/alias_key.json
+++ b/pango_designation/alias_key.json
@@ -337,6 +337,7 @@
     "XDJ": ["XBB.1.16.6","HK.3.1"],
     "XDK": ["XBB.1.16.11","JN.1.1.1"],
     "XDL": ["EG.5.1.1","XBB*"],
-    "XDM": ["XDA","GW.5","XDA"]
+    "XDM": ["XDA","GW.5","XDA"],
+    "XDN": ["JN.1.1","JD.1*"]
 }