From c7e7c28af085781dabce5d86c7397174a3318743 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Thu, 31 Aug 2023 13:38:03 +0200 Subject: [PATCH] Designate EG.13 (ORF1a:K789N) with 1000 seqs --- lineage_notes.txt | 1 + lineages.csv | 1103 ++++++++++++++++++++++++++++++++++++++++++++- 2 files changed, 1100 insertions(+), 4 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 82e92e93..64be28bd 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2986,6 +2986,7 @@ EG.10 Alias of XBB.1.9.2.10, S:A344T, S:R403K, Germany/Austria From sars-cov-2-v EG.10.1 Alias of XBB.1.9.2.10.1, S:S494P, S:A701V From sars-cov-2-variants/lineage-proposals#346 EG.11 Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia，from https://github.com/sars-cov-2-variants/lineage-proposals/issues/523 EG.12 Alias of XBB.1.9.2.12, S:E554K, N:R195T, ORF1a:T4159I, Oman/Austria/Brunei/India +EG.13 Alias of XBB.1.9.2.13, ORF1a:K789N XBB.1.9.3 ORF1b:G2005S, ORF1b:G1568C, Europe, from https://github.com/jmcbroome/auto-pango-designation/pull/193 GD.1 Alias of XBB.1.9.3.1, S:Y453F, Mexico/USA, from #1897 GD.2 Alias of XBB.1.9.3.2, S:L212S, Philippines diff --git a/lineages.csv b/lineages.csv index 2dea5bac..88f4fb3e 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2141874,10 +2141874,6 @@ Luxembourg/LNS9070763/2023,XBB.1.9.2 Germany/BW-RKI-I-1085843/2023,XBB.1.9.2 Australia/NSW-SAVID-15878/2022,XBB.1.9.2 Australia/NSW-SAVID-15899/2022,XBB.1.9.2 -France/PAC-ChTo-T230241305/2023,XBB.1.9.2 -Singapore/R3MR27/2023,XBB.1.9.2 -USA/CA-GBW-H10-011-1046/2023,XBB.1.9.2 -USA/CA-GBW-H20-282-9190/2023,XBB.1.9.2 Austria/LB-R00122-S194/2023,XBB.1.9.2 Austria/LB-R00122-S290/2023,XBB.1.9.2 Austria/Medilab_1595/2023,XBB.1.9.2 @@ -2457951,3 +2457947,1102 @@ Japan/PG-536582/2023,EG.2.5 England/CLIMB-CM7YFOMZ/2023,EG.2.5 England/CLIMB-CM7YK4JR/2023,EG.2.5 England/CLIMB-CM7YMEPM/2023,EG.2.5 +Russia/KDA-RII-MH136893S/2023,EG.13 +Pakistan/NIH-B119-S20/2023,EG.13 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