diff --git a/lineage_notes.txt b/lineage_notes.txt index 24f1a682..f152d3c2 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2818,6 +2818,7 @@ XBB.1.5.69 ORF1a:V2943I,C22513T, USA XBB.1.5.70 S:L455F, S:F456L (T22928C), ORF1a:A4068S, Brazil, from #1982 GK.1 Alias of XBB.1.5.70.1, S:S704L, Brazil, from #2025 GK.1.1 Alias of XBB.1.5.70.1.1, S:T573I, Brazil +GK.1.1.1 Alias of XBB.1.5.70.1.1.1, C28432T GK.1.2 Alias of XBB.1.5.70.1.2, S:N185D, Brazil GK.1.2.1 Alias of XBB.1.5.70.1.2.1, S:A475V, ORF1a:D147G, ORF1a:D2592Y, ORF1a:T4175I, ORF1b:N1426K, Brazil/Colombia GK.1.3 Alias of XBB.1.5.70.1.3, ORF1a:E633A, ORF1b:D1130G, USA/Canada, from sars-cov-2-variants/lineage-proposals#179 @@ -3476,7 +3477,7 @@ XCM Recombinant lineage of XBB.2.3 and DV.7.1 (breakpoint between 22017-22031), XCN Recombinant lineage of FR.1.1 and EG.5.1.1 (breakpoint between 22630-22663), China (Anhui/Shanghai), from sars-cov-2-variants/lineage-proposals#842 XCP Recombinant lineage of EG.5.1.10 and JD.1.1 (breakpoint between 14190-14633), France/Denmark/England, from sars-cov-2-variants/lineage-proposals#772 XCQ Recombinant lineage of XBB.2.3 and XBB.1.5 (breakpoint between 23123-27431), Guatemala, from #2289 -XCR Recombinant lineage of GK.1.1 and FU.1 (breakpoint between 23674-24372), USA, from #2323 +XCR Recombinant lineage of GK.1.1.1 and FU.1 (breakpoint between 23674-24372), USA, from #2323 XCS Recombinant lineage of GK.1.9 and XBB.1.16.25 (breakpoint between 223674-25044), USA, from #2311 *A.2.1 Withdrawn: Lineage with sequences predominantly from Panama *A.8 Withdrawn: Indian lineage merged with A.9 diff --git a/lineages.csv b/lineages.csv index 59434af0..3ea52851 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2471188,3 +2471188,177 @@ Sweden/O-14_SE300_DC23-005643/2023,XCS Sweden/O-14_SE300_DC23-005656/2023,XCS Sweden/O-14_SE300_DC23-005646/2023,XCS Sweden/O-14_SE300_DC23-005650/2023,XCS +USA/NY-GBW-H20-334-5692/2023,GK.1.1.1 +USA/NJ-CDC-LC1059316/2023,GK.1.1.1 +Chile/VS-68620/2023,GK.1.1.1 +Uruguay/DLSP_2385/2023,GK.1.1.1 +Argentina/SC2-36581103-RFGB-ARX/2023,GK.1.1.1 +Argentina/SC2-36581187-RFGB-ARX/2023,GK.1.1.1 +USA/TX-KVI202117/2023,GK.1.1.1 +Argentina/SC2-36580963-RFGB-ARX/2023,GK.1.1.1 +Chile/RM-60777/2023,GK.1.1.1 +USA/CA-SFDPH-S55910/2023,GK.1.1.1 +Chile/CO-70320/2023,GK.1.1.1 +Chile/VS-60161/2023,GK.1.1.1 +Chile/VS-67741/2023,GK.1.1.1 +Argentina/PAIS-N0182/2023,GK.1.1.1 +Argentina/PAIS-N0183/2023,GK.1.1.1 +Chile/RM-72297/2023,GK.1.1.1 +Chile/RM-69079/2023,GK.1.1.1 +Italy/VEN-ULSS3GEN-7002630732_VE/2023,GK.1.1.1 +Austria/AGES-AZ-1653450/2023,GK.1.1.1 +Chile/AT-71782/2023,GK.1.1.1 +Chile/AT-71783/2023,GK.1.1.1 +Chile/RM-71132/2023,GK.1.1.1 +USA/MA-CDC-LC1062484/2023,GK.1.1.1 +USA/MN-HLX-VSX-A01751/2023,GK.1.1.1 +USA/MN-HLX-VSX-A01794/2023,GK.1.1.1 +Colombia/DC-INS-VG-30591/2023,GK.1.1.1 +England/CLIMB-CM7YR481/2023,GK.1.1.1 +Chile/AR-70878/2023,GK.1.1.1 +PuertoRico/PR-CVL-019615/2023,GK.1.1.1 +PuertoRico/PR-CVL-019483/2023,GK.1.1.1 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+Canada/ON-PHL-23-32261/2023,GK.1.1.1 +Canada/ON-PHL-23-32722/2023,GK.1.1.1 +Canada/ON-PHL-23-33365/2023,GK.1.1.1 +Canada/ON-PHL-23-33360/2023,GK.1.1.1 +Canada/ON-PHL-23-33357/2023,GK.1.1.1 +Canada/ON-PHL-23-34074/2023,GK.1.1.1 +Canada/ON-PHL-23-31444/2023,GK.1.1.1 +Canada/ON-PHL-23-33363/2023,GK.1.1.1 +Canada/ON-PHL-23-31449/2023,GK.1.1.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 2f437c8c..b2ba2433 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -302,7 +302,7 @@ "XCN": ["FR.1.1","EG.5.1.1"], "XCP": ["EG.5.1.10","JD.1.1"], "XCQ": ["XBB.2.3","XBB.1.5"], - "XCR": ["GK.1.1","FU.1"], + "XCR": ["GK.1.1.1","FU.1"], "XCS": ["GK.1.9","XBB.1.16.25"] }