diff --git a/lineage_notes.txt b/lineage_notes.txt index 473a8db0..803ad9af 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1386,6 +1386,7 @@ EV.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.71.1 S:Y248H, England BQ.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2, found globally, defined by S:I666V, from issue #1082 BQ.1.2.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1 found mainly in Japan, SouthKorea and Mongolia, from pango-designation issue #1392 FB.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan +FB.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.2 S:478R, USA/South Korea/Mongolia BQ.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.3, found globally, defined by S:E619Q, from issue #1082 BQ.1.4 Alias of B.1.1.529.5.3.1.1.1.1.1.4, England and Denmark, defined by S:R190T BQ.1.5 Alias of B.1.1.529.5.3.1.1.1.1.1.5, defined by ORF1b:T1076I diff --git a/lineages.csv b/lineages.csv index ec7dea8e..8dbe56a3 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2134057,7 +2134057,6 @@ Austria/AGES-1158508/2022,BQ.1.2.1 Netherlands/NH-AUMC-033233/2022,BQ.1.2.1 Mongolia/Dorno-Gobi-125/2022,BQ.1.2.1 Turkey/KSS-PFOADH4896423183/2022,BQ.1.2.1 -USA/TX-CDC-STM-T6YVR6E73/2022,BQ.1.2.1 Mongolia/UB-100614/2022,BQ.1.2.1 Austria/AGES-1161684/2022,BQ.1.2.1 Japan/OPHO-M704/2022,BQ.1.2.1 @@ -2134091,7 +2134090,6 @@ USA/CA-CDC-STM-AMSG4EPBV/2022,BQ.1.2.1 Germany/HE-RKI-I-1036138/2022,BQ.1.2.1 Japan/PG-419637/2022,BQ.1.2.1 Turkey/KSS-UEAH4895348392/2022,BQ.1.2.1 -USA/NV-NSPHL-22-S000469-01/2022,BQ.1.2.1 Japan/TKYhug11806/2022,BQ.1.2.1 Japan/PG-406597/2022,BQ.1.2.1 Germany/NI-RKI-I-1038786/2022,BQ.1.2.1 @@ -2134178,7 +2134176,6 @@ Austria/MUIV-0710/2022,BQ.1.2.1 Japan/TKYmbc16102/2022,BQ.1.2.1 Germany/BW-RKI-I-1088615/2023,BQ.1.2.1 Austria/LB-R00118-S273/2022,BQ.1.2.1 -USA/CA-CDC-QDX44129562/2022,BQ.1.2.1 Japan/PG-415959/2022,BQ.1.2.1 Japan/PG-428783/2023,BQ.1.2.1 Japan/TKYmbc15177/2022,BQ.1.2.1 @@ -2134207,7 +2134204,6 @@ USA/MA-CDCBI-CRSP_DEGNI3P6P3LGDNTP/2022,BQ.1.2.1 USA/MA-NEB-bf91-96911/2023,BQ.1.2.1 Japan/PG-409996/2022,BQ.1.2.1 Turkey/KSS-PFOADH4896423234/2022,BQ.1.2.1 -USA/NV-CDC-QDX44273548/2022,BQ.1.2.1 Japan/PG-408499/2022,BQ.1.2.1 Canada/ON-PHL-22-59155/2022,BQ.1.2.1 Japan/TKYmbc21066/2022,BQ.1.2.1 @@ -2134229,7 +2134225,6 @@ Germany/BW-RKI-I-1078169/2022,BQ.1.2.1 Mongolia/Darkhan-5658/2022,BQ.1.2.1 Japan/TKYkbm76660/2022,BQ.1.2.1 Austria/AGES-1163573/2022,BQ.1.2.1 -USA/CA-CDC-QDX44066635/2022,BQ.1.2.1 Japan/TKYhug13584/2022,BQ.1.2.1 Germany/NI-RKI-I-1060443/2022,BQ.1.2.1 Spain/MD-HRYC-47518030/2022,BQ.1.2.1 @@ -2134321,7 +2134316,6 @@ Japan/TKYmbc19549/2022,BQ.1.2.1 Mongolia/2068/2022,BQ.1.2.1 Mongolia/UB-103040/2022,BQ.1.2.1 Japan/TKYkbm69981/2022,BQ.1.2.1 -Mongolia/Dornod-7190/2022,BQ.1.2.1 Mongolia/UB-103541/2022,BQ.1.2.1 Singapore/15294/2022,BQ.1.2.1 Austria/LB-R00118-S302/2022,BQ.1.2.1 @@ -2134332,7 +2134326,6 @@ Japan/TKYmbc26820/2022,BQ.1.2.1 USA/AL-CDC-STM-CPTFQ42CJ/2022,BQ.1.2.1 Japan/TKYkbm65254/2022,BQ.1.2.1 Mongolia/UB-98143/2022,BQ.1.2.1 -Germany/BW-RKI-I-1060242/2022,BQ.1.2.1 Japan/PG-420451/2022,BQ.1.2.1 Austria/MUIV-0747/2022,BQ.1.2.1 Singapore/17352/2022,BQ.1.2.1 @@ -2134390,7 +2134383,6 @@ Japan/TKYhug10738/2022,BQ.1.2.1 Germany/SH-RKI-I-1089852/2022,BQ.1.2.1 Japan/TKYhug12601/2022,BQ.1.2.1 Brazil/SP-IB_CEVC_2204585/2022,BQ.1.2.1 -USA/CA-SCPHL-22WGS02500/2022,BQ.1.2.1 Netherlands/OV-RIVM-121634/2022,BQ.1.2.1 Japan/PG-392101/2022,BQ.1.2.1 Japan/TKYmbc23289/2022,BQ.1.2.1 @@ -2134400,13 +2134392,11 @@ Singapore/R2MR122/2023,BQ.1.2.1 Japan/PG-424915/2022,BQ.1.2.1 Mongolia/UB-101479/2022,BQ.1.2.1 Japan/TKYkbm71055/2022,BQ.1.2.1 -USA/CA-SCPHL-22-02558/2022,BQ.1.2.1 Japan/TKYmbc23842/2022,BQ.1.2.1 Japan/TKYnat11666/2022,BQ.1.2.1 Mongolia/UB-103860/2022,BQ.1.2.1 Germany/NI-RKI-I-1038776/2022,BQ.1.2.1 Germany/SN-RKI-I-1084103/2022,BQ.1.2.1 -USA/NV-NSPHL-22-S001444-01/2022,BQ.1.2.1 Austria/LB-R00114-S123/2022,BQ.1.2.1 USA/CA-CDC-QDX43991375/2022,BQ.1.2.1 USA/CA-HLX-STM-4CF4WT8YR/2022,BQ.1.2.1 @@ -2134417,11 +2134407,9 @@ Japan/PG-414341/2022,BQ.1.2.1 Austria/AGES-1161935/2022,BQ.1.2.1 Japan/TKYmbc26819/2022,BQ.1.2.1 Japan/TKYmbc15858/2022,BQ.1.2.1 -USA/CA-CCPHL-4291/2022,BQ.1.2.1 Israel/ICH-741193499/2022,BQ.1.2.1 Turkey/KSS-HEEAH4919716094/2022,BQ.1.2.1 Denmark/DCGC-637405/2023,BQ.1.2.1 -USA/CA-CDPH-FS27887571/2022,BQ.1.2.1 India/TN-ICMR-SPHL-2475/2022,BQ.1.2.1 Germany/SN-RKI-I-1059076/2022,BQ.1.2.1 Japan/PG-415662/2022,BQ.1.2.1 @@ -2134438,7 +2134426,6 @@ Mongolia/UB-100210/2022,BQ.1.2.1 USA/CA-LACPHL-AF17770/2022,BQ.1.2.1 Japan/PG-423055/2022,BQ.1.2.1 Netherlands/ZH-RIVM-123440/2022,BQ.1.2.1 -Mongolia/UB-103740/2022,BQ.1.2.1 Austria/MUIV-0817/2022,BQ.1.2.1 Japan/TKYkbm65538/2022,BQ.1.2.1 Japan/TKYkbm73455/2022,BQ.1.2.1 @@ -2134506,7 +2134493,6 @@ Turkey/KSS-KSS4859485274/2022,BQ.1.2.1 USA/CA-HLX-STM-WE35HTJHS/2022,BQ.1.2.1 Japan/TKYkbm69144/2022,BQ.1.2.1 Japan/PG-414633/2022,BQ.1.2.1 -USA/CA-HLX-STM-V5DSPDRAU/2022,BQ.1.2.1 Mongolia/UB-96759/2022,BQ.1.2.1 Brazil/SC-FIOCRUZ-27033/2022,BQ.1.2.1 Germany/NI-RKI-I-1058480/2022,BQ.1.2.1 @@ -2134523,12 +2134509,10 @@ Germany/NI-RKI-I-1084211/2022,BQ.1.2.1 Japan/TKYmbc14987/2022,BQ.1.2.1 Germany/HH-RKI-I-1081748/2022,BQ.1.2.1 Austria/LB-R00114-S076/2022,BQ.1.2.1 -USA/CA-CDC-LC0948492/2022,BQ.1.2.1 Germany/NI-RKI-I-1076835/2022,BQ.1.2.1 USA/MA-NEB-05bc-96652/2022,BQ.1.2.1 England/QEUH-325E5513/2022,BQ.1.2.1 Japan/TKYkbm71525/2022,BQ.1.2.1 -USA/CA-CDC-STM-GU9KYSDT9/2022,BQ.1.2.1 Netherlands/OV-RIVM-121618/2022,BQ.1.2.1 Germany/SH-RKI-I-1082327/2022,BQ.1.2.1 USA/CO-CDPHE-2103716168/2022,BQ.1.2.1 @@ -2134549,7 +2134533,6 @@ Luxembourg/LNS2064238/2022,BQ.1.2.1 Japan/PG-425594/2022,BQ.1.2.1 Germany/BW-RKI-I-1069606/2022,BQ.1.2.1 Japan/PG-399802/2022,BQ.1.2.1 -USA/NV-NSPHL-22-00088458-01/2022,BQ.1.2.1 Japan/TKYmbc21846/2022,BQ.1.2.1 Japan/PG-408096/2022,BQ.1.2.1 Japan/TKYkbm65477/2022,BQ.1.2.1 @@ -2134571,7 +2134554,6 @@ Mongolia/Umnuugobi-2181/2022,BQ.1.2.1 Germany/NI-RKI-I-1060914/2022,BQ.1.2.1 Japan/TKYkbm65925/2022,BQ.1.2.1 Japan/TKYkbm68046/2022,BQ.1.2.1 -USA/CA-CDC-LC0973329/2022,BQ.1.2.1 Japan/TKYmbc20186/2022,BQ.1.2.1 Mongolia/UB-100467/2022,BQ.1.2.1 Mongolia/UB-100921/2022,BQ.1.2.1 @@ -2353454,3 +2353436,85 @@ Taiwan/CDC-F78515/2023,FB.1 Taiwan/CDC-F78517/2023,FB.1 Taiwan/CDC-F78518/2023,FB.1 Taiwan/CDC-F78516/2023,FB.1 +USA/CA-CDPH-FS48074622/2022,FB.2 +USA/NV-CDC-QDX45639351/2023,FB.2 +USA/NV-CDC-LC0998689/2023,FB.2 +USA/CA-CDC-LC0948492/2022,FB.2 +USA/NV-NSPHL-23-00006635/2023,FB.2 +USA/NV-NSPHL-23-00006629/2023,FB.2 +USA/CA-CDPH-500091341/2022,FB.2 +USA/CA-CDPH-500090913/2022,FB.2 +USA/NV-NSPHL-22-S000469-01/2022,FB.2 +USA/CA-CCPHL-4525/2023,FB.2 +USA/NV-CDC-QDX45593198/2023,FB.2 +USA/CA-CDC-QDX45789612/2023,FB.2 +USA/CA-HLX-STM-WFANFGBRJ/2022,FB.2 +USA/CA-CDPH-FS48079068/2023,FB.2 +USA/NV-CDC-LC0994928/2023,FB.2 +USA/CA-CDPH-FS48075365/2022,FB.2 +USA/NV-CDC-LC0993359/2023,FB.2 +USA/CA-CDC-LC0973329/2022,FB.2 +Mongolia/UB-103740/2022,FB.2 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