From b43c4a68f987e7ce110df05142724a8c9030f45d Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Sat, 10 Jun 2023 16:01:22 +0200 Subject: [PATCH] Designate DV.7 (S:T883I, ORF1a:A3548V, England, from #2038) with 280 seqs --- lineage_notes.txt | 1 + lineages.csv | 273 +++++++++++++++++++++++++++++++++++++++++++--- 2 files changed, 258 insertions(+), 16 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 3fcc63cd..04222579 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -868,6 +868,7 @@ DV.3.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.3.1 found mainly in Portugal and UK DV.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.4, Malaysia/Singapore, S:I714V, from #1617 DV.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.5, England/Australia, ORF1a:R24C, S:613H, from #1753 DV.6 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6, T15591C +DV.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7, S:T883I, ORF1a:A3548V, England, from #2038 CH.1.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.2, defined by S:T883I, ORF1a:Y1846C, ORF1a:G2294S on T27576C branch CH.1.1.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.3, S:S255P, New Zealand/Australia/Hong Kong, from #1405 CH.1.1.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.4, S:H681R, Austria, from #1370 diff --git a/lineages.csv b/lineages.csv index 5e58591c..78601d18 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2285653,10 +2285653,8 @@ England/QEUH-32686434/2022,CH.1.1.1 Wales/PHWC-PKJWH7/2022,CH.1.1.1 Sweden/01_SE100_23CS100022/2023,CH.1.1.1 Sweden/3293866064/2022,CH.1.1.1 -England/BRBR-326ED3E3/2023,CH.1.1.1 Sweden/1260772373VN/2023,CH.1.1.1 USA/IL-CDC-QDX46179562/2023,CH.1.1.1 -England/BRBR-326BD249/2023,CH.1.1.1 Scotland/SCOT-25391/2023,CH.1.1.1 Sweden/CS500580/2023,CH.1.1.1 England/PHEP-YYGJPX7/2023,CH.1.1.1 @@ -2285948,7 +2285946,6 @@ England/QEUH-326DAEBB/2023,CH.1.1.1 England/BRBR-326E6229/2023,CH.1.1.1 Ireland/CE-NVRL-SIRL00011272/2023,CH.1.1.1 Sweden/01_SE100_22CS510956/2022,CH.1.1.1 -England/PHEC-YYENTHK/2023,CH.1.1.1 Scotland/SCOT-26299/2022,CH.1.1.1 England/PLYM-326EBA3B/2023,CH.1.1.1 Australia/SA522638/2023,CH.1.1.1 @@ -2286046,7 +2286043,6 @@ Sweden/03_SE600_000200512424N2/2022,CH.1.1.1 Wales/PHWC-PKCR4M/2023,CH.1.1.1 England/PHEC-YY8IP5K/2022,CH.1.1.1 England/PHEC-YY8IM5C/2022,CH.1.1.1 -England/QEUH-326D2493/2023,CH.1.1.1 Wales/PHWC-PKMFB9/2023,CH.1.1.1 England/LSPA-32696079/2023,CH.1.1.1 Ireland/TA-Enfer-261222002_B9/2022,CH.1.1.1 @@ -2286214,7 +2286210,6 @@ Australia/ACT10754/2023,CH.1.1.1 England/PHEP-YYGJ7OK/2023,CH.1.1.1 England/BRBR-326699A1/2022,CH.1.1.1 Peru/LIM-INS-39098/2023,CH.1.1.1 -England/BRBR-326BD1F1/2023,CH.1.1.1 England/QEUH-326A0971/2023,CH.1.1.1 Germany/HH-RKI-I-1105311/2023,CH.1.1.1 England/PLYM-326C88D0/2023,CH.1.1.1 @@ -2286397,7 +2286392,6 @@ England/QEUH-326D99BB/2023,CH.1.1.1 France/NOR-CHUR-77046238/2023,CH.1.1.1 England/BRBR-326EDB72/2023,CH.1.1.1 England/PHEP-YYGMA33/2023,CH.1.1.1 -England/BRBR-326EF712/2023,CH.1.1.1 England/LSPA-32644739/2022,CH.1.1.1 Sweden/SUS0020881/2023,CH.1.1.1 England/BRBR-326D3F37/2023,CH.1.1.1 @@ -2286429,7 +2286423,6 @@ Sweden/PEP165305/2023,CH.1.1.1 England/BRBR-326AB91C/2023,CH.1.1.1 Peru/LIM-INS-39206/2023,CH.1.1.1 Germany/BW-RKI-I-1088761/2023,CH.1.1.1 -England/QEUH-326EA762/2023,CH.1.1.1 England/BRBR-326C3D7C/2023,CH.1.1.1 England/PHEC-YY89WMO/2023,CH.1.1.1 Ireland/D-FAW32337_07/2023,CH.1.1.1 @@ -2286977,7 +2286970,6 @@ Australia/NSW-ICPMR-42712/2023,CH.1.1.1 Canada/ON-PHL-23-06461/2023,CH.1.1.1 Denmark/DCGC-639718/2023,CH.1.1.1 Israel/ICH-741192351/2022,CH.1.1.1 -England/PHEC-YYENEA5/2023,CH.1.1.1 Scotland/SCOT-24436/2023,CH.1.1.1 England/BRBR-326F28FB/2023,CH.1.1.1 Wales/PHWC-PKJFI4/2022,CH.1.1.1 @@ -2287060,7 +2287052,6 @@ England/PHEC-YYEGMSW/2023,CH.1.1.1 Germany/BE-ChVir-LB-17-86852/2023,CH.1.1.1 France/ARA-HCL723000228201/2023,CH.1.1.1 England/QEUH-326C29B5/2023,CH.1.1.1 -England/QEUH-326F38AF/2023,CH.1.1.1 Sweden/01_SE100_23CS500076/2022,CH.1.1.1 Australia/SA520211/2023,CH.1.1.1 Denmark/DCGC-631161/2022,CH.1.1.1 @@ -2287133,7 +2287124,6 @@ USA/FL-CDC-LC1008806/2023,CH.1.1.1 Wales/PHWC-PKJ1P6/2022,CH.1.1.1 England/LSPA-3266CC4B/2022,CH.1.1.1 Sweden/2A656293521/2022,CH.1.1.1 -USA/CA-GBW-H20-291-1443/2023,CH.1.1.1 Spain/MD-HRYC-12609655/2023,CH.1.1.1 England/PHEP-YYGJARE/2023,CH.1.1.1 Denmark/DCGC-626761/2022,CH.1.1.1 @@ -2287143,7 +2287133,6 @@ Australia/NSW-ICPMR-40306/2022,CH.1.1.1 Germany/BE-ChVir-LB-17-4727/2023,CH.1.1.1 USA/VA-CDC-LC0936920/2022,CH.1.1.1 England/BRBR-326DC3D8/2023,CH.1.1.1 -England/BRBR-326E65C6/2023,CH.1.1.1 England/PHEC-YYEGXI1/2023,CH.1.1.1 England/PHEC-YY8H3BF/2023,CH.1.1.1 England/LSPA-325FFAEA/2022,CH.1.1.1 @@ -2287197,7 +2287186,6 @@ England/QEUH-326B4770/2023,CH.1.1.1 Finland/THL-01820/2023,CH.1.1.1 Austria/LB-R00126-S181/2023,CH.1.1.1 England/QEUH-326DFF77/2023,CH.1.1.1 -England/BRBR-326EE7F5/2023,CH.1.1.1 Singapore/R5MR78/2023,CH.1.1.1 England/PLYM-326B3B48/2023,CH.1.1.1 Wales/PHWC-PKE1SP/2022,CH.1.1.1 @@ -2287257,13 +2287245,11 @@ England/BRBR-3266586C/2022,CH.1.1.1 England/PLYM-326AB008/2023,CH.1.1.1 Iceland/L-3809/2023,CH.1.1.1 England/PHEP-YYGEXTA/2022,CH.1.1.1 -England/QEUH-326F610B/2023,CH.1.1.1 Netherlands/UT-RIVM-125680/2023,CH.1.1.1 Netherlands/FR-RIVM-124367/2023,CH.1.1.1 Denmark/DCGC-638586/2023,CH.1.1.1 Scotland/LSPA-3266A64F/2022,CH.1.1.1 Germany/BW-ChVir-LB-230210-5653/2023,CH.1.1.1 -England/PHEC-YYENW6D/2023,CH.1.1.1 Netherlands/UT-RIVM-125763/2023,CH.1.1.1 Finland/THL-02650/2023,CH.1.1.1 Germany/BW-RKI-I-1108998/2023,CH.1.1.1 @@ -2287297,7 +2287283,6 @@ England/PHEP-YYGKRHJ/2023,CH.1.1.1 England/LSPA-3262BF9A/2022,CH.1.1.1 Ireland/KY-Enfer-010123001_B5/2023,CH.1.1.1 England/PHEP-YYGFMBD/2022,CH.1.1.1 -England/PHEC-YYERI66/2023,CH.1.1.1 England/BRBR-326D680C/2023,CH.1.1.1 Scotland/SCOT-26196/2023,CH.1.1.1 England/PHEC-YYEDRA7/2023,CH.1.1.1 @@ -2287549,7 +2287534,6 @@ England/BRBR-326B4479/2023,CH.1.1.1 Australia/NSW-ICPMR-41221/2023,CH.1.1.1 Australia/ACT10757/2023,CH.1.1.1 Finland/THL-01948/2023,CH.1.1.1 -England/BRBR-326EEB08/2023,CH.1.1.1 Wales/LSPA-326203D5/2022,CH.1.1.1 England/PLYM-326CDE9D/2023,CH.1.1.1 England/QEUH-326D136A/2023,CH.1.1.1 @@ -2416933,3 +2416917,260 @@ Canada/ON-PHL-23-22122/2023,XBB.1.5.86 Canada/ON-PHL-23-22123/2023,XBB.1.5.86 Canada/ON-PHL-23-21699/2023,XBB.1.5.86 Canada/ON-PHL-23-21702/2023,XBB.1.5.86 +England/PHEC-YYENTHK/2023,DV.7 +England/PHEC-YYENW6D/2023,DV.7 +England/QEUH-326D2DC5/2023,DV.7 +England/PHEC-YYEJHUD/2023,DV.7 +England/PHEC-YYEXQOM/2023,DV.7 +England/PHEC-YYENEA5/2023,DV.7 +England/PHEC-YYEA37U/2023,DV.7 +England/PHEC-YYEOEHS/2023,DV.7 +England/BRBR-327001A3/2023,DV.7 +England/BRBR-32713CF7/2023,DV.7 +England/BRBR-327138A8/2023,DV.7 +England/PHEC-YYEKUF8/2023,DV.7 +England/PHEC-YYEJ6I7/2023,DV.7 +England/PHEC-YYEAUGE/2023,DV.7 +England/PHEC-YYEA9O8/2023,DV.7 +England/PHEC-YYEAREU/2023,DV.7 +England/PHEC-YYE4COS/2023,DV.7 +England/PHEP-YYGUZDS/2023,DV.7 +England/PHEP-YYGWY91/2023,DV.7 +England/PHEC-YYEWSBZ/2023,DV.7 +England/PHEP-YYGWA5N/2023,DV.7 +England/PHEP-YYGWR9Q/2023,DV.7 +England/PHEP-YYGWY6W/2023,DV.7 +England/PHEP-YYGWBDK/2023,DV.7 +Germany/BY-LGL-IMS-10272-CVDP-d7632177-4431-43f5-b995-8cf03bb406fc/2023,DV.7 +England/PHEC-YYEXF3N/2023,DV.7 +England/QEUH-326D45CB/2023,DV.7 +England/PHEC-YYEK5PX/2023,DV.7 +England/PHEC-YYEJOJR/2023,DV.7 +England/BRBR-3270585E/2023,DV.7 +England/BRBR-3270595B/2023,DV.7 +England/BRBR-327056CD/2023,DV.7 +England/BRBR-327059F1/2023,DV.7 +England/BRBR-327075BF/2023,DV.7 +England/BRBR-32707E0F/2023,DV.7 +England/PHEC-YYEX1QC/2023,DV.7 +England/BRBR-3270BB13/2023,DV.7 +England/BRBR-32705D22/2023,DV.7 +Germany/SL-RKI-I-1119917/2023,DV.7 +Germany/BW-RKI-I-1122928/2023,DV.7 +Germany/RP-RKI-I-1124745/2023,DV.7 +Germany/BW-RKI-I-1127007/2023,DV.7 +Netherlands/GE-RIVM-127722/2023,DV.7 +Norway/6747/2023,DV.7 +Germany/NW-RKI-I-1132367/2023,DV.7 +Germany/RP-RKI-I-1128176/2023,DV.7 +Germany/SN-RKI-I-1129328/2023,DV.7 +Germany/RP-RKI-I-1126125/2023,DV.7 +Germany/BW-RKI-I-1118578/2023,DV.7 +Germany/BW-RKI-I-1109159/2023,DV.7 +Germany/BW-RKI-I-1136028/2023,DV.7 +Germany/BW-RKI-I-1131116/2023,DV.7 +Australia/SA532864/2023,DV.7 +Australia/SA530019/2023,DV.7 +Australia/SA532844/2023,DV.7 +Australia/SA531110/2023,DV.7 +USA/CA-GBW-H20-291-1443/2023,DV.7 +England/QEUH-326F736E/2023,DV.7 +England/QEUH-326F66DF/2023,DV.7 +England/QEUH-326FE2A6/2023,DV.7 +England/BRBR-3270E4E8/2023,DV.7 +England/QEUH-326D2493/2023,DV.7 +Norway/4228/2023,DV.7 +England/BRBR-32706653/2023,DV.7 +England/BRBR-32706B81/2023,DV.7 +England/PHEC-YYE1HDT/2023,DV.7 +England/QEUH-326E7EE8/2023,DV.7 +England/PHEC-YYET8DE/2023,DV.7 +England/BRBR-326C2F2C/2023,DV.7 +England/BRBR-326C443A/2023,DV.7 +England/PHEC-YYEJDZW/2023,DV.7 +England/BRBR-326EF712/2023,DV.7 +England/BRBR-326EEB08/2023,DV.7 +England/BRBR-326C4A0B/2023,DV.7 +England/BRBR-326BD382/2023,DV.7 +England/BRBR-326BCFCB/2023,DV.7 +England/BRBR-326ED3E3/2023,DV.7 +England/BRBR-326EEC50/2023,DV.7 +England/BRBR-326BCFF8/2023,DV.7 +England/BRBR-326BCD49/2023,DV.7 +England/BRBR-326BD1F1/2023,DV.7 +England/BRBR-326BD48F/2023,DV.7 +England/BRBR-326BD1C4/2023,DV.7 +England/BRBR-326C3231/2023,DV.7 +England/BRBR-326C2E2F/2023,DV.7 +England/BRBR-326E6C49/2023,DV.7 +England/BRBR-326E5DDE/2023,DV.7 +England/BRBR-326E6890/2023,DV.7 +England/BRBR-326E65C6/2023,DV.7 +England/BRBR-326E5AAA/2023,DV.7 +England/BRBR-326EEF48/2023,DV.7 +England/BRBR-326EE7F5/2023,DV.7 +England/BRBR-326ED26E/2023,DV.7 +England/BRBR-326BD249/2023,DV.7 +England/BRBR-326BD100/2023,DV.7 +England/BRBR-326E5E26/2023,DV.7 +England/QEUH-326F3B97/2023,DV.7 +England/QEUH-326EF062/2023,DV.7 +England/BRBR-326CDD45/2023,DV.7 +England/QEUH-326F38AF/2023,DV.7 +Netherlands/NB-MVD-C2300405/2023,DV.7 +England/PHEC-YYE1EUR/2023,DV.7 +England/PHEC-YYEMWU8/2023,DV.7 +England/PLYM-3270FF7D/2023,DV.7 +England/PHEC-YYERI66/2023,DV.7 +England/QEUH-326FA36B/2023,DV.7 +England/PHEC-YYEK3H1/2023,DV.7 +England/PHEC-YYEJZXT/2023,DV.7 +England/BRBR-326E521B/2023,DV.7 +England/PHEC-YYEMZOK/2023,DV.7 +England/PHEC-YYEUF33/2023,DV.7 +England/PHEC-YYE1SWW/2023,DV.7 +England/PHEC-YYEWJR6/2023,DV.7 +England/PHEC-YYEUFUF/2023,DV.7 +England/PHEC-YYEPHN6/2023,DV.7 +USA/CA-Stanford-141_S17/2023,DV.7 +Spain/PV-HUD-70002393/2023,DV.7 +England/PHEC-YYEIC6R/2023,DV.7 +England/PHEC-YYEPHGS/2023,DV.7 +England/PHEP-YYGIZH9/2023,DV.7 +England/PHEC-YYE3HF9/2023,DV.7 +Scotland/SCOT-30940/2023,DV.7 +England/QEUH-326ED9D2/2023,DV.7 +Northern_Ireland/NIRE-02090b/2023,DV.7 +England/PHEC-YYEZM8O/2023,DV.7 +England/PHEC-YYEZMT5/2023,DV.7 +England/BRBR-3271A8CF/2023,DV.7 +England/PHEC-YYEASXU/2023,DV.7 +England/PHEC-YYEA8GW/2023,DV.7 +England/PHEC-YYESMZT/2023,DV.7 +England/QEUH-326F610B/2023,DV.7 +England/QEUH-3271440D/2023,DV.7 +England/PHEC-YYEZUGK/2023,DV.7 +England/QEUH-326EA762/2023,DV.7 +England/PHEC-YYE4QWC/2023,DV.7 +England/PHEC-YYE14AE/2023,DV.7 +England/PHEC-YYE1ZT3/2023,DV.7 +England/QEUH-326F6A97/2023,DV.7 +England/PHEC-YYED4NW/2023,DV.7 +Northern_Ireland/NIRE-020992/2023,DV.7 +England/PHEC-YYEAG3Q/2023,DV.7 +England/BRBR-3270BD95/2023,DV.7 +England/BRBR-3270C004/2023,DV.7 +England/BRBR-3270BD2C/2023,DV.7 +England/PHEC-YYEIP6D/2023,DV.7 +England/PHEC-YYET9RQ/2023,DV.7 +England/BRBR-3270BDA4/2023,DV.7 +England/PHEP-YYGW7TT/2023,DV.7 +England/PHEC-YYEZK4K/2023,DV.7 +England/PHEC-YYE4Q9S/2023,DV.7 +England/PHEC-YYEA3U8/2023,DV.7 +England/PHEC-YYETXES/2023,DV.7 +Spain/CL-COV41753/2023,DV.7 +France/GES-IPP10341/2023,DV.7 +England/PHEC-YYEIQTH/2023,DV.7 +England/PHEC-YYE48HD/2023,DV.7 +England/PHEC-YYE4EO4/2023,DV.7 +England/PHEC-YYE4ERU/2023,DV.7 +England/PHEC-YYE36CX/2023,DV.7 +England/PHEC-YYEACB3/2023,DV.7 +England/PHEC-YYE4EB3/2023,DV.7 +France/NAQ-HCL-723000716401/2023,DV.7 +England/PHEP-YYGIABI/2023,DV.7 +England/BRBR-3271A81A/2023,DV.7 +France/GES-IPP14416/2023,DV.7 +Scotland/SCOT-31172/2023,DV.7 +Portugal/PT48024/2023,DV.7 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