diff --git a/automated-issue-ref.ipynb b/automated-issue-ref.ipynb index 510d61d8..44229a7a 100755 --- a/automated-issue-ref.ipynb +++ b/automated-issue-ref.ipynb @@ -2,7 +2,7 @@ "cells": [ { "cell_type": "code", - "execution_count": 6, + "execution_count": 1, "id": "f64573a2", "metadata": { "scrolled": true @@ -130,7 +130,21 @@ "processed 1160 milestones\n", "processed 1170 milestones\n", "processed 1180 milestones\n", - "processed 1190 milestones\n" + "processed 1190 milestones\n", + "processed 1200 milestones\n", + "processed 1210 milestones\n", + "processed 1220 milestones\n", + "processed 1230 milestones\n", + "processed 1240 milestones\n", + "processed 1250 milestones\n", + "processed 1260 milestones\n", + "processed 1270 milestones\n", + "processed 1280 milestones\n", + "processed 1290 milestones\n", + "processed 1300 milestones\n", + "processed 1310 milestones\n", + "processed 1320 milestones\n", + "processed 1330 milestones\n" ] } ], @@ -227,7 +241,7 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": 2, "id": "88a367db", "metadata": {}, "outputs": [], @@ -264,7 +278,7 @@ }, { "cell_type": "code", - "execution_count": 8, + "execution_count": 3, "id": "f5b15585", "metadata": {}, "outputs": [], @@ -287,7 +301,7 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": 4, "id": "a56544a8", "metadata": {}, "outputs": [ @@ -295,61 +309,60 @@ "name": "stdout", "output_type": "stream", "text": [ - "['DV.7.1.6', 'sars-cov-2-variants/lineage-proposals#765']\n", - "['JN.1.1', 'sars-cov-2-variants/lineage-proposals#987']\n", - "['JN.1.1.1', 'sars-cov-2-variants/lineage-proposals#1097']\n", - "['JN.1.2', 'sars-cov-2-variants/lineage-proposals#1087']\n", - "['JN.4', 'sars-cov-2-variants/lineage-proposals#1009']\n", - "['JN.5.1', 'sars-cov-2-variants/lineage-proposals#954']\n", - "['JN.7', 'sars-cov-2-variants/lineage-proposals#856']\n", - "['JN.10', 'sars-cov-2-variants/lineage-proposals#954']\n", - "['BA.2.86.4', 'sars-cov-2-variants/lineage-proposals#1032']\n", + "['KG.1', 'sars-cov-2-variants/lineage-proposals#951']\n", + "['DV.7.1.8', 'sars-cov-2-variants/lineage-proposals#860']\n", + "['JN.1.1.2', 'sars-cov-2-variants/lineage-proposals#1147']\n", + "['JN.1.1.3', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['JN.1.6.1', 'sars-cov-2-variants/lineage-proposals#1089']\n", + "['JN.1.7', 'sars-cov-2-variants/lineage-proposals#1097']\n", + "['JN.1.8.1', 'sars-cov-2-variants/lineage-proposals#1097']\n", + "['JN.1.9', '#2410']\n", + "['JN.1.10', 'sars-cov-2-variants/lineage-proposals#1135']\n", + "['JN.2.2', '#2433']\n", + "['JN.2.5', 'sars-cov-2-variants/lineage-proposals#1173']\n", "['JH.2', '#2068']\n", - "['JD.1.1.5', 'sars-cov-2-variants/lineage-proposals#1079']\n", - "['KC.1', 'sars-cov-2-variants/lineage-proposals#614']\n", - "['KF.1', 'sars-cov-2-variants/lineage-proposals#890']\n", - "['KF.2', 'sars-cov-2-variants/lineage-proposals#1111']\n", - "['HK.3.2.2', 'sars-cov-2-variants/lineage-proposals#867']\n", - "['HK.3.9', 'sars-cov-2-variants/lineage-proposals#1092']\n", - "['HK.3.10', 'sars-cov-2-variants/lineage-proposals#1055']\n", - "['HK.3.12', 'sars-cov-2-variants/lineage-proposals#886']\n", - "['HK.3.13', 'sars-cov-2-variants/lineage-proposals#601']\n", - "['HK.20', 'sars-cov-2-variants/lineage-proposals#537']\n", - "['HK.20.1', 'sars-cov-2-variants/lineage-proposals#537']\n", - "['HK.23.1', 'sars-cov-2-variants/lineage-proposals#537']\n", - "['HK.23.1.1', 'sars-cov-2-variants/lineage-proposals#537']\n", - "['HK.24.1', 'sars-cov-2-variants/lineage-proposals#537']\n", - "['HK.26', 'sars-cov-2-variants/lineage-proposals#763']\n", - "['HK.26.1', 'sars-cov-2-variants/lineage-proposals#763']\n", - "['HK.27.1', 'sars-cov-2-variants/lineage-proposals#525']\n", - "['HK.32', 'sars-cov-2-variants/lineage-proposals#601']\n", - "['HK.33', 'sars-cov-2-variants/lineage-proposals#537']\n", - "['HK.34', 'sars-cov-2-variants/lineage-proposals#905']\n", - "['HK.34.1', 'sars-cov-2-variants/lineage-proposals#1048']\n", - "['HV.1.2', 'sars-cov-2-variants/lineage-proposals#957']\n", - "['HV.1.4', 'sars-cov-2-variants/lineage-proposals#957']\n", - "['HV.1.5', 'sars-cov-2-variants/lineage-proposals#957']\n", - "['HV.1.6.1', 'sars-cov-2-variants/lineage-proposals#957']\n", - "['HV.1.7', 'sars-cov-2-variants/lineage-proposals#957']\n", - "['KB.3', 'sars-cov-2-variants/lineage-proposals#1052']\n", - "['KB.4', 'sars-cov-2-variants/lineage-proposals#891']\n", - "['JR.1.1.1', 'sars-cov-2-variants/lineage-proposals#1015']\n", - "['EG.5.1.16', 'sars-cov-2-variants/lineage-proposals#899']\n", - "['EG.5.1.17', 'sars-cov-2-variants/lineage-proposals#537']\n", - "['EG.5.1.19', 'sars-cov-2-variants/lineage-proposals#537']\n", - "['EG.5.2.4', 'sars-cov-2-variants/lineage-proposals#770']\n", - "['GY.1.1', 'sars-cov-2-variants/lineage-proposals#804']\n", - "['GY.1.1.1', 'sars-cov-2-variants/lineage-proposals#804']\n", - "['XBB.1.16.26', 'sars-cov-2-variants/lineage-proposals#685']\n", - "['GA.10.1', 'sars-cov-2-variants/lineage-proposals#919']\n", - "['KE.2', 'sars-cov-2-variants/lineage-proposals#945']\n", - "['FY.5.2', 'sars-cov-2-variants/lineage-proposals#267']\n", - "['FY.5.4', 'sars-cov-2-variants/lineage-proposals#929']\n", - "['FY.5.5.1', 'sars-cov-2-variants/lineage-proposals#929']\n", - "['FY.8.1', 'sars-cov-2-variants/lineage-proposals#1002']\n", - "['FY.8.1.1', 'sars-cov-2-variants/lineage-proposals#1002']\n", - "['XBC.1.3.1', 'sars-cov-2-variants/lineage-proposals#542']\n", - "['KD.1', 'sars-cov-2-variants/lineage-proposals#673']\n" + "['GK.1.8', 'sars-cov-2-variants/lineage-proposals#643']\n", + "['GK.1.8.1', 'sars-cov-2-variants/lineage-proposals#1127']\n", + "['GK.1.11', 'sars-cov-2-variants/lineage-proposals#643']\n", + "['GK.3.1', 'sars-cov-2-variants/lineage-proposals#643']\n", + "['KK.1', 'sars-cov-2-variants/lineage-proposals#1210']\n", + "['KK.2', 'sars-cov-2-variants/lineage-proposals#1277']\n", + "['XBB.1.5.108', 'sars-cov-2-variants/lineage-proposals#550']\n", + "['XBB.1.5.109', '#2262']\n", + "['HN.4.1', 'sars-cov-2-variants/lineage-proposals#1054']\n", + "['HN.4.1.1', 'sars-cov-2-variants/lineage-proposals#1054']\n", + "['HN.4.2', 'sars-cov-2-variants/lineage-proposals#971']\n", + "['FL.1.8', 'sars-cov-2-variants/lineage-proposals#1058']\n", + "['FL.2.7', 'sars-cov-2-variants/lineage-proposals#552']\n", + "['FL.2.7.1', 'sars-cov-2-variants/lineage-proposals#552']\n", + "['FL.10', 'sars-cov-2-variants/lineage-proposals#28']\n", + "['FL.24.1', 'sars-cov-2-variants/lineage-proposals#789']\n", + "['FL.38', 'sars-cov-2-variants/lineage-proposals#1001']\n", + "['HK.3.14', 'sars-cov-2-variants/lineage-proposals#978']\n", + "['JG.3.4', 'sars-cov-2-variants/lineage-proposals#1081']\n", + "['KL.1', 'sars-cov-2-variants/lineage-proposals#1174']\n", + "['HV.1.8', '#2432']\n", + "['HV.1.9', 'sars-cov-2-variants/lineage-proposals#957']\n", + "['HV.1.10', 'sars-cov-2-variants/lineage-proposals#1044']\n", + "['HV.2', 'sars-cov-2-variants/lineage-proposals#537']\n", + "['EG.7', 'sars-cov-2-variants/lineage-proposals#56']\n", + "['FP.2', 'sars-cov-2-variants/lineage-proposals#31']\n", + "['JF.1.1.1', 'sars-cov-2-variants/lineage-proposals#643']\n", + "['JF.3', 'sars-cov-2-variants/lineage-proposals#976']\n", + "['XBB.1.16.28', 'sars-cov-2-variants/lineage-proposals#1000']\n", + "['XBB.1.16.29', 'sars-cov-2-variants/lineage-proposals#524']\n", + "['XBB.1.16.30', 'sars-cov-2-variants/lineage-proposals#554']\n", + "['FY.1.2.1', 'sars-cov-2-variants/lineage-proposals#863']\n", + "['FW.1.1.1', 'sars-cov-2-variants/lineage-proposals#1242']\n", + "['GE.1.2.1', 'sars-cov-2-variants/lineage-proposals#1103']\n", + "['XBB.2.3.21', 'sars-cov-2-variants/lineage-proposals#281']\n", + "['XBC.1.7', 'sars-cov-2-variants/lineage-proposals#110']\n", + "['XBL.3.1', 'sars-cov-2-variants/lineage-proposals#44']\n", + "['XDA.1', 'sars-cov-2-variants/lineage-proposals#1031']\n", + "['XDD.1', 'sars-cov-2-variants/lineage-proposals#1203']\n", + "['XDD.1.1', 'sars-cov-2-variants/lineage-proposals#1203']\n", + "['XDD.2', 'sars-cov-2-variants/lineage-proposals#1176']\n", + "['XDH', 'sars-cov-2-variants/lineage-proposals#128']\n" ] } ], diff --git a/autoref/milestone.txt b/autoref/milestone.txt index 23b3897b..4ee15674 100755 --- a/autoref/milestone.txt +++ b/autoref/milestone.txt @@ -893,6 +893,15 @@ 823 XCR XCR 824 GK.1.2.1 GK.1.2.1 825 XCS XCS +826 XBB.1.5.109 XBB.1.5.109 +827 XDL XDL +828 HV.1.8 HV.1.8 +829 JN.1.5 JN.1.5 +830 JN.2.3 JN.2.3 +831 HN.8 HN.8 +832 JN.2.2 JN.2.2 +833 JN.1.9 JN.1.9 +834 JN.1.11 JN.1.11 sars#1 XCE XCE sars#2 XCF XCF sars#4 CM.7.1 CM.7.1+CM.7.1.1 @@ -981,6 +990,7 @@ sars#88 GK.2 GK.2 sars#89 HQ.1 HQ.1 sars#91 EG.2.4 EG.2.4 sars#92 EG.2.3 EG.2.3 +sars#93 XBB.1.5.103 XBB.1.5.103 sars#94 JG.1 JG.1 sars#95 EG.2.5 EG.2.5 sars#96 JH.2 JH.2 @@ -990,6 +1000,7 @@ sars#99 HF.1.1 HF.1.1 sars#100 EG.2.2 EG.2.2+XBB.1.16.23 sars#100 XBB.1.16.23 EG.2.2+XBB.1.16.23 sars#102 HK.9 HK.9 +sars#103 JJ.1 JJ.1 sars#105 HK.11 HK.11 sars#106 XBB.1.16.24 XBB.1.16.24 sars#107 JG.2 JG.2 @@ -1004,9 +1015,6 @@ sars#114 HK.3.3 HK.3.3 sars#115 FL.4.11 FL.4.11 sars#116 GJ.1.2.5 GJ.1.2.5 sars#117 HK.3.2 HK.3.2 -sars#119 GW.5.1.1 GW.5.1.1+GK.1.6+GK.1.6.1 -sars#119 GK.1.6 GW.5.1.1+GK.1.6+GK.1.6.1 -sars#119 GK.1.6.1 GW.5.1.1+GK.1.6+GK.1.6.1 sars#120 DV.7.1.1 DV.7.1.1 sars#121 GK.2.3 GK.2.3 sars#122 JG.3 JG.3 @@ -1108,21 +1116,22 @@ sars#215 XDA XDA sars#216 XDB XDB sars#217 XDC XDC sars#218 HH.5 HH.5 -sars#220 EG.5.1.8 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 HK.13 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 HK.1.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 HK.14 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 JR.1.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 HK.2.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 HK.11.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 HK.20 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 HK.20.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 HK.24.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 HK.23.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 HK.23.1.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 EG.5.1.17 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 EG.5.1.19 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 -sars#220 HK.33 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33 +sars#220 EG.5.1.8 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HK.13 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HK.1.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HK.14 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 JR.1.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HK.2.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HK.11.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HK.20 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HK.20.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HK.24.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HK.23.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HK.23.1.1 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 EG.5.1.17 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 EG.5.1.19 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HK.33 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 +sars#220 HV.2 EG.5.1.8+HK.13+HK.1.1+HK.14+JR.1.1+HK.2.1+HK.11.1,+HK.20+HK.20.1+HK.24.1+HK.23.1+HK.23.1.1+EG.5.1.17+EG.5.1.19+HK.33+HV.2 sars#221 JN.4 JN.4 sars#222 XCT.1 XCT.1 sars#223 HK.21 HK.21 @@ -1153,7 +1162,6 @@ sars#248 HK.3.9 HK.3.9 sars#250 HK.3.2.2 HK.3.2.2 sars#252 HK.25 HK.25 sars#253 KB.4 KB.4 -sars#254 JN.1.1 JN.1.1 sars#255 HK.26 HK.26+HK.26.1 sars#255 HK.26.1 HK.26+HK.26.1 sars#256 FL.1.5.2 FL.1.5.2+KC.1 @@ -1167,13 +1175,14 @@ sars#263 GY.1.1 GY.1.1+GY.1.1.1 sars#263 GY.1.1.1 GY.1.1+GY.1.1.1 sars#264 KD.1 KD.1 sars#265 XBC.1.3.1 XBC.1.3.1 -sars#266 JN.1.1.1 JN.1.1.1 sars#267 JN.1.2 JN.1.2 -sars#268 HV.1.2 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4 -sars#268 HV.1.5 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4 -sars#268 HV.1.6.1 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4 -sars#268 HV.1.7 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4 -sars#268 HV.1.4 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4 +sars#268 HV.1.2 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4+HV.1.8+HV.1.9 +sars#268 HV.1.5 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4+HV.1.8+HV.1.9 +sars#268 HV.1.6.1 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4+HV.1.8+HV.1.9 +sars#268 HV.1.7 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4+HV.1.8+HV.1.9 +sars#268 HV.1.4 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4+HV.1.8+HV.1.9 +sars#268 HV.1.8 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4+HV.1.8+HV.1.9 +sars#268 HV.1.9 HV.1.2+HV.1.5+HV.1.6.1+HV.1.7+HV.1.4+HV.1.8+HV.1.9 sars#271 HK.32 HK.32+HK.3.13 sars#271 HK.3.13 HK.32+HK.3.13 sars#272 HK.3.12 HK.3.12 @@ -1190,3 +1199,137 @@ sars#281 FY.8.1 FY.8.1+FY.8.1.1 sars#281 FY.8.1.1 FY.8.1+FY.8.1.1 sars#282 HK.34.1 HK.34.1 sars#283 GA.10.1 GA.10.1 +sars#284 XDH XDH +sars#285 XDJ XDJ +sars#286 JF.3 JF.3 +sars#287 XBB.1.16.28 XBB.1.16.28 +sars#288 FY.1.2.1 FY.1.2.1 +sars#289 XBB.1.16.30 XBB.1.16.30 +sars#291 XBB.2.6.1 XBB.2.6.1+GH.1 +sars#291 GH.1 XBB.2.6.1+GH.1 +sars#292 XBB.1.32.1 XBB.1.32.1 +sars#293 XBB.1.45.1 XBB.1.45.1 +sars#294 FL.17.2 FL.17.2 +sars#295 FY.3.1 FY.3.1 +sars#296 FP.2 FP.2 +sars#297 XBL.3.1 XBL.3.1 +sars#298 XBB.1.41 XBB.1.41 +sars#299 FL.2.3 FL.2.3 +sars#300 EG.5.1.1 EG.5.1.1 +sars#301 FL.18.1.1 FL.18.1.1 +sars#302 FP.3 FP.3 +sars#303 XDA.1 XDA.1 +sars#304 FL.5.1 FL.5.1 +sars#305 XBB.1.48 XBB.1.48 +sars#306 FL.15 FL.15 +sars#307 FL.10 FL.10 +sars#308 XBB.1.5.74 XBB.1.5.74 +sars#309 XBB.1.16.16 XBB.1.16.16 +sars#310 EG.7 EG.7 +sars#311 XBB.2.3.12 XBB.2.3.12 +sars#312 FL.16 FL.16 +sars#313 GY.1 GY.1 +sars#314 FL.4.7 FL.4.7 +sars#315 XBB.1.43 XBB.1.43+XBB.1.43.1 +sars#315 XBB.1.43.1 XBB.1.43+XBB.1.43.1 +sars#316 FL.20 FL.20 +sars#317 XBB.1.4.2 XBB.1.4.2 +sars#318 FL.13.2 FL.13.2 +sars#319 HC.1 HC.1 +sars#320 FL.4.1.1 FL.4.1.1 +sars#321 XBC.1.7 XBC.1.7 +sars#322 DV.7.1 DV.7.1 +sars#323 FR.1.3 FR.1.3 +sars#324 XBB.2.3.21 XBB.2.3.21 +sars#325 FL.4.10 FL.4.10 +sars#326 GJ.1.2 GJ.1.2 +sars#327 XBB.1.44.1 XBB.1.44.1 +sars#328 DV.6.2 DV.6.2 +sars#329 GL.1 GL.1 +sars#330 XCD XCD +sars#331 HE.1 HE.1 +sars#332 XBB.1.5.89 XBB.1.5.89 +sars#333 HH.1.1 HH.1.1 +sars#334 XBB.1.42.1 XBB.1.42.1 +sars#335 FL.4.9 FL.4.9 +sars#336 HB.1 HB.1 +sars#337 FR.1.4 FR.1.4 +sars#338 EU.1.1.3 EU.1.1.3 +sars#339 XCF.1 XCF.1 +sars#340 FL.24 FL.24 +sars#341 CJ.1.3.1 CJ.1.3.1+CJ.1.3.2 +sars#341 CJ.1.3.2 CJ.1.3.1+CJ.1.3.2 +sars#342 CM.8.1.5 CM.8.1.5 +sars#343 FL.20.1 FL.20.1 +sars#344 HF.1 HF.1 +sars#345 FL.21.1 FL.21.1 +sars#346 FU.5 FU.5 +sars#347 XBB.1.16.15 XBB.1.16.15 +sars#348 HK.6 HK.6 +sars#349 FL.19.1 FL.19.1 +sars#350 FL.2.6 FL.2.6 +sars#351 FL.10.2 FL.10.2 +sars#352 XCW XCW +sars#353 HS.1.1 HS.1.1 +sars#354 XCL XCL +sars#355 DV.7.1.2 DV.7.1.2 +sars#356 XCS XCS +sars#357 XCP XCP +sars#358 XCR XCR +sars#359 XBB.1.5.108 XBB.1.5.108 +sars#360 EG.14 EG.14 +sars#361 XBB.1.5.109 XBB.1.5.109 +sars#362 FL.1.8 FL.1.8 +sars#363 FL.24.1 FL.24.1 +sars#364 HN.4.2 HN.4.2 +sars#365 HN.4.1 HN.4.1+HN.4.1.1 +sars#365 HN.4.1.1 HN.4.1+HN.4.1.1 +sars#366 FL.38 FL.38 +sars#367 JG.3.4 JG.3.4 +sars#368 GE.1.2.1 GE.1.2.1 +sars#369 KG.1 KG.1 +sars#370 DV.7.1.8 DV.7.1.8 +sars#371 XDK XDK +sars#372 XBB.1.16.29 XBB.1.16.29 +sars#374 JE.1.1.1 JE.1.1.1+KH.1 +sars#374 KH.1 JE.1.1.1+KH.1 +sars#375 GW.5.1.1 GW.5.1.1+GK.1.6+GK.1.6.1+GK.4+GK.3.1+GK.8.1+GK.1.2.1+GK.1.8+JF.1.1.1+GK.1.11 +sars#375 GK.1.6 GW.5.1.1+GK.1.6+GK.1.6.1+GK.4+GK.3.1+GK.8.1+GK.1.2.1+GK.1.8+JF.1.1.1+GK.1.11 +sars#375 GK.1.6.1 GW.5.1.1+GK.1.6+GK.1.6.1+GK.4+GK.3.1+GK.8.1+GK.1.2.1+GK.1.8+JF.1.1.1+GK.1.11 +sars#375 GK.4 GW.5.1.1+GK.1.6+GK.1.6.1+GK.4+GK.3.1+GK.8.1+GK.1.2.1+GK.1.8+JF.1.1.1+GK.1.11 +sars#375 GK.3.1 GW.5.1.1+GK.1.6+GK.1.6.1+GK.4+GK.3.1+GK.8.1+GK.1.2.1+GK.1.8+JF.1.1.1+GK.1.11 +sars#375 GK.8.1 GW.5.1.1+GK.1.6+GK.1.6.1+GK.4+GK.3.1+GK.8.1+GK.1.2.1+GK.1.8+JF.1.1.1+GK.1.11 +sars#375 GK.1.2.1 GW.5.1.1+GK.1.6+GK.1.6.1+GK.4+GK.3.1+GK.8.1+GK.1.2.1+GK.1.8+JF.1.1.1+GK.1.11 +sars#375 GK.1.8 GW.5.1.1+GK.1.6+GK.1.6.1+GK.4+GK.3.1+GK.8.1+GK.1.2.1+GK.1.8+JF.1.1.1+GK.1.11 +sars#375 JF.1.1.1 GW.5.1.1+GK.1.6+GK.1.6.1+GK.4+GK.3.1+GK.8.1+GK.1.2.1+GK.1.8+JF.1.1.1+GK.1.11 +sars#375 GK.1.11 GW.5.1.1+GK.1.6+GK.1.6.1+GK.4+GK.3.1+GK.8.1+GK.1.2.1+GK.1.8+JF.1.1.1+GK.1.11 +sars#376 GK.1.8.1 GK.1.8.1 +sars#377 FL.2.7 FL.2.7+FL.2.7.1 +sars#377 FL.2.7.1 FL.2.7+FL.2.7.1 +sars#378 JN.1.1 JN.1.1+JN.1.4 +sars#378 JN.1.4 JN.1.1+JN.1.4 +sars#379 XDL XDL +sars#380 HV.1.10 HV.1.10 +sars#381 JN.1.5 JN.1.5 +sars#382 JN.1.1.2 JN.1.1.2 +sars#383 JN.2.5 JN.2.5 +sars#384 JN.2.2 JN.2.2 +sars#385 XDD.1 XDD.1+XDD.1.1 +sars#385 XDD.1.1 XDD.1+XDD.1.1 +sars#386 XDD.2 XDD.2 +sars#387 JN.1.9 JN.1.9 +sars#389 JN.1.1.1 JN.1.1.1+JN.1.8.1+JN.1.7 +sars#389 JN.1.8.1 JN.1.1.1+JN.1.8.1+JN.1.7 +sars#389 JN.1.7 JN.1.1.1+JN.1.8.1+JN.1.7 +sars#390 JN.1.1.3 JN.1.1.3+JN.1.6.1 +sars#390 JN.1.6.1 JN.1.1.3+JN.1.6.1 +sars#391 JN.2.3 JN.2.3 +sars#392 HN.8 HN.8 +sars#393 XDM XDM +sars#394 FW.1.1.1 FW.1.1.1 +sars#395 KK.1 KK.1 +sars#396 KK.2 KK.2 +sars#397 KL.1 KL.1 +sars#398 HK.3.14 HK.3.14 +sars#399 JN.1.10 JN.1.10 +sars#400 JN.1.11 JN.1.11 diff --git a/autoref/missing_refs.txt b/autoref/missing_refs.txt index 0dc7e89d..560783a5 100755 --- a/autoref/missing_refs.txt +++ b/autoref/missing_refs.txt @@ -1,55 +1,54 @@ -DV.7.1.6 sars-cov-2-variants/lineage-proposals#765 -JN.1.1 sars-cov-2-variants/lineage-proposals#987 -JN.1.1.1 sars-cov-2-variants/lineage-proposals#1097 -JN.1.2 sars-cov-2-variants/lineage-proposals#1087 -JN.4 sars-cov-2-variants/lineage-proposals#1009 -JN.5.1 sars-cov-2-variants/lineage-proposals#954 -JN.7 sars-cov-2-variants/lineage-proposals#856 -JN.10 sars-cov-2-variants/lineage-proposals#954 -BA.2.86.4 sars-cov-2-variants/lineage-proposals#1032 +KG.1 sars-cov-2-variants/lineage-proposals#951 +DV.7.1.8 sars-cov-2-variants/lineage-proposals#860 +JN.1.1.2 sars-cov-2-variants/lineage-proposals#1147 +JN.1.1.3 sars-cov-2-variants/lineage-proposals#1089 +JN.1.6.1 sars-cov-2-variants/lineage-proposals#1089 +JN.1.7 sars-cov-2-variants/lineage-proposals#1097 +JN.1.8.1 sars-cov-2-variants/lineage-proposals#1097 +JN.1.9 #2410 +JN.1.10 sars-cov-2-variants/lineage-proposals#1135 +JN.2.2 #2433 +JN.2.5 sars-cov-2-variants/lineage-proposals#1173 JH.2 #2068 -JD.1.1.5 sars-cov-2-variants/lineage-proposals#1079 -KC.1 sars-cov-2-variants/lineage-proposals#614 -KF.1 sars-cov-2-variants/lineage-proposals#890 -KF.2 sars-cov-2-variants/lineage-proposals#1111 -HK.3.2.2 sars-cov-2-variants/lineage-proposals#867 -HK.3.9 sars-cov-2-variants/lineage-proposals#1092 -HK.3.10 sars-cov-2-variants/lineage-proposals#1055 -HK.3.12 sars-cov-2-variants/lineage-proposals#886 -HK.3.13 sars-cov-2-variants/lineage-proposals#601 -HK.20 sars-cov-2-variants/lineage-proposals#537 -HK.20.1 sars-cov-2-variants/lineage-proposals#537 -HK.23.1 sars-cov-2-variants/lineage-proposals#537 -HK.23.1.1 sars-cov-2-variants/lineage-proposals#537 -HK.24.1 sars-cov-2-variants/lineage-proposals#537 -HK.26 sars-cov-2-variants/lineage-proposals#763 -HK.26.1 sars-cov-2-variants/lineage-proposals#763 -HK.27.1 sars-cov-2-variants/lineage-proposals#525 -HK.32 sars-cov-2-variants/lineage-proposals#601 -HK.33 sars-cov-2-variants/lineage-proposals#537 -HK.34 sars-cov-2-variants/lineage-proposals#905 -HK.34.1 sars-cov-2-variants/lineage-proposals#1048 -HV.1.2 sars-cov-2-variants/lineage-proposals#957 -HV.1.4 sars-cov-2-variants/lineage-proposals#957 -HV.1.5 sars-cov-2-variants/lineage-proposals#957 -HV.1.6.1 sars-cov-2-variants/lineage-proposals#957 -HV.1.7 sars-cov-2-variants/lineage-proposals#957 -KB.3 sars-cov-2-variants/lineage-proposals#1052 -KB.4 sars-cov-2-variants/lineage-proposals#891 -JR.1.1.1 sars-cov-2-variants/lineage-proposals#1015 -EG.5.1.16 sars-cov-2-variants/lineage-proposals#899 -EG.5.1.17 sars-cov-2-variants/lineage-proposals#537 -EG.5.1.19 sars-cov-2-variants/lineage-proposals#537 -EG.5.2.4 sars-cov-2-variants/lineage-proposals#770 -GY.1.1 sars-cov-2-variants/lineage-proposals#804 -GY.1.1.1 sars-cov-2-variants/lineage-proposals#804 -XBB.1.16.26 sars-cov-2-variants/lineage-proposals#685 -GA.10.1 sars-cov-2-variants/lineage-proposals#919 -KE.2 sars-cov-2-variants/lineage-proposals#945 -FY.5.2 sars-cov-2-variants/lineage-proposals#267 -FY.5.4 sars-cov-2-variants/lineage-proposals#929 -FY.5.5.1 sars-cov-2-variants/lineage-proposals#929 -FY.8.1 sars-cov-2-variants/lineage-proposals#1002 -FY.8.1.1 sars-cov-2-variants/lineage-proposals#1002 -XBC.1.3.1 sars-cov-2-variants/lineage-proposals#542 -KD.1 sars-cov-2-variants/lineage-proposals#673 +GK.1.8 sars-cov-2-variants/lineage-proposals#643 +GK.1.8.1 sars-cov-2-variants/lineage-proposals#1127 +GK.1.11 sars-cov-2-variants/lineage-proposals#643 +GK.3.1 sars-cov-2-variants/lineage-proposals#643 +KK.1 sars-cov-2-variants/lineage-proposals#1210 +KK.2 sars-cov-2-variants/lineage-proposals#1277 +XBB.1.5.108 sars-cov-2-variants/lineage-proposals#550 +XBB.1.5.109 #2262 +HN.4.1 sars-cov-2-variants/lineage-proposals#1054 +HN.4.1.1 sars-cov-2-variants/lineage-proposals#1054 +HN.4.2 sars-cov-2-variants/lineage-proposals#971 +FL.1.8 sars-cov-2-variants/lineage-proposals#1058 +FL.2.7 sars-cov-2-variants/lineage-proposals#552 +FL.2.7.1 sars-cov-2-variants/lineage-proposals#552 +FL.10 sars-cov-2-variants/lineage-proposals#28 +FL.24.1 sars-cov-2-variants/lineage-proposals#789 +FL.38 sars-cov-2-variants/lineage-proposals#1001 +HK.3.14 sars-cov-2-variants/lineage-proposals#978 +JG.3.4 sars-cov-2-variants/lineage-proposals#1081 +KL.1 sars-cov-2-variants/lineage-proposals#1174 +HV.1.8 #2432 +HV.1.9 sars-cov-2-variants/lineage-proposals#957 +HV.1.10 sars-cov-2-variants/lineage-proposals#1044 +HV.2 sars-cov-2-variants/lineage-proposals#537 +EG.7 sars-cov-2-variants/lineage-proposals#56 +FP.2 sars-cov-2-variants/lineage-proposals#31 +JF.1.1.1 sars-cov-2-variants/lineage-proposals#643 +JF.3 sars-cov-2-variants/lineage-proposals#976 +XBB.1.16.28 sars-cov-2-variants/lineage-proposals#1000 +XBB.1.16.29 sars-cov-2-variants/lineage-proposals#524 +XBB.1.16.30 sars-cov-2-variants/lineage-proposals#554 +FY.1.2.1 sars-cov-2-variants/lineage-proposals#863 +FW.1.1.1 sars-cov-2-variants/lineage-proposals#1242 +GE.1.2.1 sars-cov-2-variants/lineage-proposals#1103 +XBB.2.3.21 sars-cov-2-variants/lineage-proposals#281 +XBC.1.7 sars-cov-2-variants/lineage-proposals#110 +XBL.3.1 sars-cov-2-variants/lineage-proposals#44 +XDA.1 sars-cov-2-variants/lineage-proposals#1031 +XDD.1 sars-cov-2-variants/lineage-proposals#1203 +XDD.1.1 sars-cov-2-variants/lineage-proposals#1203 +XDD.2 sars-cov-2-variants/lineage-proposals#1176 +XDH sars-cov-2-variants/lineage-proposals#128 diff --git a/lineage_notes.txt b/lineage_notes.txt index 46cfa37e..5545f453 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -885,11 +885,11 @@ JV.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.2.2, S:V772I, France/Spain DV.7.1.3 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.3, S:A262S, on branch ORF1a:K3353R, from sars-cov-2-variants/lineage-proposals#851 DV.7.1.4 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.4, G28001T, on branch ORF1a:K3353R DV.7.1.5 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5, N:T135A, Spain, from sars-cov-2-variants/lineage-proposals#729 -KG.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5.1, S:M153I +KG.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5.1, S:M153I, from sars-cov-2-variants/lineage-proposals#951 KG.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5.2, S:H49Y, S:A264D, S:G485R, Spain/Canada DV.7.1.6 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.6, S:Q183K, N:A217S, from sars-cov-2-variants/lineage-proposals#765 DV.7.1.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.7, S:V90I -DV.7.1.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.8, S:T961M, Spain +DV.7.1.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.8, S:T961M, Spain, from sars-cov-2-variants/lineage-proposals#860 DV.7.1.9 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.9, S:R1185H, Australia DV.7.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.2, C703T, England DV.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.8, S:Q613H, C8299T, C19602T, Sweden @@ -1052,26 +1052,26 @@ BA.2.86.1 Alias of B.1.1.529.2.86.1, ORF1a:K1973R, mostly with C12815T, mainly E JN.1 Alias of B.1.1.529.2.86.1.1, S:L455S, ORF1a:R3821K, ORF7b:F19L, Europe JN.1.1 Alias of B.1.1.529.2.86.1.1.1, ORF1a:F499L, C11747T, France, from sars-cov-2-variants/lineage-proposals#987 JN.1.1.1 Alias of B.1.1.529.2.86.1.1.1.1, S:T572I after C9142T, France/Sweden/Poland, from sars-cov-2-variants/lineage-proposals#1097 -JN.1.1.2 Alias of B.1.1.529.2.86.1.1.1.2, S:G181E, France -JN.1.1.3 Alias of B.1.1.529.2.86.1.1.1.3, S:R346T, ORF1b:H2388Y, France/Sweden +JN.1.1.2 Alias of B.1.1.529.2.86.1.1.1.2, S:G181E, France, from sars-cov-2-variants/lineage-proposals#1147 +JN.1.1.3 Alias of B.1.1.529.2.86.1.1.1.3, S:R346T, ORF1b:H2388Y, France/Sweden, from sars-cov-2-variants/lineage-proposals#1089 JN.1.2 Alias of B.1.1.529.2.86.1.1.2, S:M1229I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1087 JN.1.3 Alias of B.1.1.529.2.86.1.1.3, ORF8:Q18*, Netherlands JN.1.4 Alias of B.1.1.529.2.86.1.1.4, ORF1a:T170I, Denmark/Singapore, from #2381 JN.1.5 Alias of B.1.1.529.2.86.1.1.5, ORF1b:V1271T, Singapore/Malaysia/Indonesia, from #2419 JN.1.6 Alias of B.1.1.529.2.86.1.1.6, G22627A -JN.1.6.1 Alias of B.1.1.529.2.86.1.1.6.1, S:R346T, Sweden -JN.1.7 Alias of B.1.1.529.2.86.1.1.7, S:T572I, S:E1150D, USA/France +JN.1.6.1 Alias of B.1.1.529.2.86.1.1.6.1, S:R346T, Sweden, from sars-cov-2-variants/lineage-proposals#1089 +JN.1.7 Alias of B.1.1.529.2.86.1.1.7, S:T572I, S:E1150D, USA/France, from sars-cov-2-variants/lineage-proposals#1097 JN.1.8 Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I -JN.1.8.1 Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, USA/Denmark -JN.1.9 Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada -JN.1.10 Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada +JN.1.8.1 Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097 +JN.1.9 Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada, from #2410 +JN.1.10 Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1135 JN.1.11 Alias of B.1.1.529.2.86.1.1.11, S:V1104L, G17334T, India, from #2446 JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284 JN.2.1 Alias of B.1.1.529.2.86.1.2.1, S:S31F, Sweden/Australia -JN.2.2 Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands +JN.2.2 Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433 JN.2.3 Alias of B.1.1.529.2.86.1.2.3, S:V193L, from #2442 JN.2.4 Alias of B.1.1.529.2.86.1.2.4, S:L242F, Sweden -JN.2.5 Alias of B.1.1.529.2.86.1.2.5, S:L455S, Canada, USA, Lithuania +JN.2.5 Alias of B.1.1.529.2.86.1.2.5, S:L455S, Canada, USA, Lithuania, from sars-cov-2-variants/lineage-proposals#1173 JN.3 Alias of B.1.1.529.2.86.1.3, ORF1a:T2087I, Europe, from sars-cov-2-variants/lineage-proposals#892 JN.3.1 Alias of B.1.1.529.2.86.1.3.1, S:L922F, ORF7a:T28I, Spain JN.3.2 Alias of B.1.1.529.2.86.1.3.2, N:H300Y, ORF1a:P892S, from #2445 @@ -1548,7 +1548,7 @@ FB.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan, fro FB.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.2 S:478R, USA/South Korea/Mongolia BQ.1.2.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2, S:K147E, S:R346T, S:V445A, West Africa, from #1861 JH.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.1, S:K182E, S:486A, S:S494P, S:E554K, from #2068 -JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068 +JH.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2.2.2, S:A484K, S:V486A, USA/Canada/Finland, from sars-cov-2-variants/lineage-proposals#650, from #2068, from #2068, from #2068 BQ.1.2.3 Alias of B.1.1.529.5.3.1.1.1.1.1.2.3, E:V24L, Canada BQ.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.3, found globally, defined by S:E619Q, from #1082 BQ.1.3.1 Alias of B.1.1.529.5.3.1.1.1.1.1.3.1, C2509T, Spain @@ -2877,11 +2877,11 @@ GK.1.5 Alias of XBB.1.5.70.1.5, S:F186L, ORF1a:T1597I, Brazil GK.1.6 Alias of XBB.1.5.70.1.6, ORF3a:V50I, Colombia, from sars-cov-2-variants/lineage-proposals#643 GK.1.6.1 Alias of XBB.1.5.70.1.6.1, S:A475V, ORF1a:I114V, Colombia, from sars-cov-2-variants/lineage-proposals#643 GK.1.7 Alias of XBB.1.5.70.1.7, S:F186L, T11695C, Europe -GK.1.8 Alias of XBB.1.5.70.1.8, S:E554K, S:A475V, Brazil -GK.1.8.1 Alias of XBB.1.5.70.1.8.1, S:K187I, S:A222P, Brazil/Paraguay +GK.1.8 Alias of XBB.1.5.70.1.8, S:E554K, S:A475V, Brazil, from sars-cov-2-variants/lineage-proposals#643 +GK.1.8.1 Alias of XBB.1.5.70.1.8.1, S:K187I, S:A222P, Brazil/Paraguay, from sars-cov-2-variants/lineage-proposals#1127 GK.1.9 Alias of XBB.1.5.70.1.9, C17010T, USA GK.1.10 Alias of XBB.1.5.70.1.10, Orf1a:I573V, Orf1a:T4129I, Orf9b:T95M, Brazil, from #2375 -GK.1.11 Alias of XBB.1.5.70.1.11, S:A475V, ORF1a:P309L, Brazil +GK.1.11 Alias of XBB.1.5.70.1.11, S:A475V, ORF1a:P309L, Brazil, from sars-cov-2-variants/lineage-proposals#643 GK.1.11.1 Alias of XBB.1.5.70.1.11.1, S:I68V, Brazil GK.2 Alias of XBB.1.5.70.2, S:V511I, from sars-cov-2-variants/lineage-proposals#300 GK.2.1 Alias of XBB.1.5.70.2.1, ORF1a:L624I, ORF1a:L3641S, ORF1b:S763C @@ -2890,7 +2890,7 @@ GK.2.2 Alias of XBB.1.5.70.2.2, S:E554D, from sars-cov-2-variants/lineage-propos GK.2.3 Alias of XBB.1.5.70.2.3, S:K356T, England, from sars-cov-2-variants/lineage-proposals#813 GK.2.4 Alias of XBB.1.5.70.2.4, S:K356T, USA-NY, from sars-cov-2-variants/lineage-proposals#823 GK.3 Alias of XBB.1.5.70.3, ORF1a:A876S, Brazil/USA/Canada -GK.3.1 Alias of XBB.1.5.70.3.1, S:A475V, USA +GK.3.1 Alias of XBB.1.5.70.3.1, S:A475V, USA, from sars-cov-2-variants/lineage-proposals#643 GK.3.2 Alias of XBB.1.5.70.3.2, S:T572I, USA, from #2272 GK.4 Alias of XBB.1.5.70.4, S:A475V, ORF1a:T2859I, ORF1ab:T4711I, from #2276 GK.5 Alias of XBB.1.5.70.5, S:G181V, Brazil, from sars-cov-2-variants/lineage-proposals#736 @@ -2964,8 +2964,8 @@ JD.1.1.5 Alias of XBB.1.5.102.1.1.5, S:Q677R, USA/Canada, from sars-cov-2-varian JD.1.1.6 Alias of XBB.1.5.102.1.1.6, S:M153V, Brazil JD.1.1.7 Alias of XBB.1.5.102.1.1.7, ORF1b:R2257S JD.1.1.8 Alias of XBB.1.5.102.1.1.8, ORF1a:N1094K, without C19185T, Brazil -KK.1 Alias of XBB.1.5.102.1.1.8.1, S:D1153H, Brazil/USA -KK.2 Alias of XBB.1.5.102.1.1.8.2, S:N481K, Brazil +KK.1 Alias of XBB.1.5.102.1.1.8.1, S:D1153H, Brazil/USA, from sars-cov-2-variants/lineage-proposals#1210 +KK.2 Alias of XBB.1.5.102.1.1.8.2, S:N481K, Brazil, from sars-cov-2-variants/lineage-proposals#1277 JD.1.2 Alias of XBB.1.5.102.1.2, S:P1162S, Brazil, from sars-cov-2-variants/lineage-proposals#136 JD.1.2.1 Alias of XBB.1.5.102.1.2.1, S:E554Q, from sars-cov-2-variants/lineage-proposals#870 JD.1.2.2 Alias of XBB.1.5.102.1.2.2, S:A1078T, Brazil @@ -2978,8 +2978,8 @@ XBB.1.5.105 S:K304N, USA/Europe XBB.1.5.106 S:A623V, ORF1a:V28I, ORF1a:R3542H, Guatemala, from #2270 XBB.1.5.107 C24130T, Argentina/Uruguay/Bolivia JZ.1 Alias of XBB.1.5.107.1, S:F456L (T22928C), Argentina/Brazil, from sars-cov-2-variants/lineage-proposals#224 -XBB.1.5.108 S:F456L, S:K304N -XBB.1.5.109 S:F456L, ORF1a:T654A +XBB.1.5.108 S:F456L, S:K304N , from sars-cov-2-variants/lineage-proposals#550 +XBB.1.5.109 S:F456L, ORF1a:T654A, from #2262 XBB.1.5.110 ORF1aT4129I, Mexico XBB.1.6 USA, S:L216F, S:H146K, from #1428 XBB.1.7 USA-NY, S:V608I @@ -3000,9 +3000,9 @@ HN.2.1 Alias of XBB.1.9.1.1.5.1.2.1, S:Q836R, from sars-cov-2-variants/lineage-p HN.3 Alias of XBB.1.9.1.1.5.1.3, S:S494P HN.3.1 Alias of XBB.1.9.1.1.5.1.3.1, S:D253G, from sars-cov-2-variants/lineage-proposals#383 HN.4 Alias of XBB.1.9.1.1.5.1.4, ORF1a:T403I -HN.4.1 Alias of XBB.1.9.1.1.5.1.4.1, S:A1020S -HN.4.1.1 Alias of XBB.1.9.1.1.5.1.4.1.1, S:I68T, S:L452R, S:E554K, New Zealand/Canada -HN.4.2 Alias of XBB.1.9.1.1.5.1.4.2, S:Q14H, Georgia/Russia +HN.4.1 Alias of XBB.1.9.1.1.5.1.4.1, S:A1020S, from sars-cov-2-variants/lineage-proposals#1054 +HN.4.1.1 Alias of XBB.1.9.1.1.5.1.4.1.1, S:I68T, S:L452R, S:E554K, New Zealand/Canada, from sars-cov-2-variants/lineage-proposals#1054 +HN.4.2 Alias of XBB.1.9.1.1.5.1.4.2, S:Q14H, Georgia/Russia, from sars-cov-2-variants/lineage-proposals#971 HN.5 Alias of XBB.1.9.1.1.5.1.5, S:E554K, from sars-cov-2-variants/lineage-proposals#936 HN.6 Alias of XBB.1.9.1.1.5.1.6, ORF1a:D1933A HN.7 Alias of XBB.1.9.1.1.5.1.7, C6388T, T20028C, C20115T, Europe @@ -3012,7 +3012,7 @@ KC.1 Alias of XBB.1.9.1.1.5.2.1, S:S490P, ORF1a:T4129I, ORF1a:S723F, Europe, fro KC.1.1 Alias of XBB.1.9.1.1.5.2.1.1, S:V1228L, England FL.1.6 Alias of XBB.1.9.1.1.6, S:N481K, S:Q1208H, from sars-cov-2-variants/lineage-proposals#59 FL.1.7 Alias of XBB.1.9.1.1.7, S:478R, S:C1235F, Indonesia, from #1985 -FL.1.8 Alias of XBB.1.9.1.1.8, S:K478R, S:P521T, M:I8V, Russia +FL.1.8 Alias of XBB.1.9.1.1.8, S:K478R, S:P521T, M:I8V, Russia, from sars-cov-2-variants/lineage-proposals#1058 FL.2 Alias of XBB.1.9.1.2, T4579A FL.2.1 Alias of XBB.1.9.1.2.1, C10228T, Germany, global FL.2.2 Alias of XBB.1.9.1.2.2, S:T478R, Indonesia, from #1927 @@ -3022,8 +3022,8 @@ FL.2.3.1 Alias of XBB.1.9.1.2.3.1, S:K356T, China FL.2.4 Alias of XBB.1.9.1.2.4, ORF8:S67F, China FL.2.5 Alias of XBB.1.9.1.2.5, S:Q314E, from sars-cov-2-variants/lineage-proposals#342 FL.2.6 Alias of XBB.1.9.1.2.6, S:N641K, from #2180 -FL.2.7 Alias of XBB.1.9.1.2.7, ORF1a:A2618T -FL.2.7.1 Alias of XBB.1.9.1.2.7.1, S:K478R on ORF1a:V3718F branch, South Africa +FL.2.7 Alias of XBB.1.9.1.2.7, ORF1a:A2618T, from sars-cov-2-variants/lineage-proposals#552 +FL.2.7.1 Alias of XBB.1.9.1.2.7.1, S:K478R on ORF1a:V3718F branch, South Africa, from sars-cov-2-variants/lineage-proposals#552 FL.3 Alias of XBB.1.9.1.3, T1753C, England FL.3.1 Alias of XBB.1.9.1.3.1, ORF1a:T2264I, England FL.3.2 Alias of XBB.1.9.1.3.2, T8830C, England/Spain @@ -3048,7 +3048,7 @@ FL.6 Alias of XBB.1.9.1.6, ORF1a:I849V, Bahrain/Egypt/Oman/Austria FL.7 Alias of XBB.1.9.1.7, S:T51I FL.8 Alias of XBB.1.9.1.8, ORF3a:I62F, Europe FL.9 Alias of XBB.1.9.1.9, C23707T, T29691C, England -FL.10 Alias of XBB.1.9.1.10, ORF1a:C657Y +FL.10 Alias of XBB.1.9.1.10, ORF1a:C657Y, from sars-cov-2-variants/lineage-proposals#28 FL.10.1 Alias of XBB.1.9.1.10.1, S:E554K, C4234T, 220bp deletion in ORF8, South Korea, from #2040 FL.10.2 Alias of XBB.1.9.1.10.2, S:K356T, S:T523N, Canada/USA, from #2220 FL.10.3 Alias of XBB.1.9.1.10.3, S:G181R @@ -3093,7 +3093,7 @@ FL.23.1 Alias of XBB.1.9.1.23.1, ORF1a:A2584V, C23185T, C8311T FL.23.2 Alias of XBB.1.9.1.23.2, S:S494P, ORF1a:P2256S, Philippines, from sars-cov-2-variants/lineage-proposals#381 FL.23.2.1 Alias of XBB.1.9.1.23.2.1, S:P521T, Philippines FL.24 Alias of XBB.1.9.1.24, S:Q613H, S:A688V, from sars-cov-2-variants/lineage-proposals#284 -FL.24.1 Alias of XBB.1.9.1.24.1, S:478R, T9139C, C24919T, Russia +FL.24.1 Alias of XBB.1.9.1.24.1, S:478R, T9139C, C24919T, Russia, from sars-cov-2-variants/lineage-proposals#789 FL.25 Alias of XBB.1.9.1.25, S:E554K, USA/England, from #2040 FL.26 Alias of XBB.1.9.1.26, C22264T FL.26.1 Alias of XBB.1.9.1.26.1, S:493L, Sweden @@ -3113,7 +3113,7 @@ FL.35 Alias of XBB.1.9.1.35, ORF8:S103L, South Africa FL.35.1 Alias of XBB.1.9.1.35.1, S:478R, South Africa FL.36 Alias of XBB.1.9.1.36, S:76I, S:190S, S:356T, S:572I, S:899S, S:1070T, England/US/Denmark, sars-cov-2-variants/lineage-proposals#805 FL.37 Alias of XBB.1.9.1.37, C547T, C29614T -FL.38 Alias of XBB.1.9.1.38, S:K478R, S:Q613H, C25482T, Russia +FL.38 Alias of XBB.1.9.1.38, S:K478R, S:Q613H, C25482T, Russia, from sars-cov-2-variants/lineage-proposals#1001 FL.39 Alias of XBB.1.9.1.39, ORF1a:E633K, Russia FL.39.1 Alias of XBB.1.9.1.39.1, S:K478R, S:P521S, Russia FL.40 Alias of XBB.1.9.1.40, ORF1a:I3758V, Russia @@ -3164,7 +3164,7 @@ HK.3.10 Alias of XBB.1.9.2.5.1.1.3.10, S:A1078S, from sars-cov-2-variants/lineag HK.3.11 Alias of XBB.1.9.2.5.1.1.3.11, S:F186S, China HK.3.12 Alias of XBB.1.9.2.5.1.1.3.12, S:A688T, USA, from sars-cov-2-variants/lineage-proposals#886 HK.3.13 Alias of XBB.1.9.2.5.1.1.3.13, S:Q14R, China, from sars-cov-2-variants/lineage-proposals#601 -HK.3.14 Alias of XBB.1.9.2.5.1.1.3.14, S:A475V, ORF1b:2378T, England/Australia +HK.3.14 Alias of XBB.1.9.2.5.1.1.3.14, S:A475V, ORF1b:2378T, England/Australia, from sars-cov-2-variants/lineage-proposals#978 HK.4 Alias of XBB.1.9.2.5.1.1.4, S:T883I, China HK.5 Alias of XBB.1.9.2.5.1.1.5, S:Q677H, China HK.6 Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, on T14988C branch UK/USA, from #2184 @@ -3215,7 +3215,7 @@ JG.3 Alias of XBB.1.9.2.5.1.3.3, S:L455F, S:S704L, Europe, from #2231 JG.3.1 Alias of XBB.1.9.2.5.1.3.3.1, S:T307I, from sars-cov-2-variants/lineage-proposals#829 JG.3.2 Alias of XBB.1.9.2.5.1.3.3.2, S:N450D, Canada, from #2376 JG.3.3 Alias of XBB.1.9.2.5.1.3.3.3, S:A83S, Belgium, from #2363 -JG.3.4 Alias of XBB.1.9.2.5.1.3.3.4, S:478R, USA +JG.3.4 Alias of XBB.1.9.2.5.1.3.3.4, S:478R, USA, from sars-cov-2-variants/lineage-proposals#1081 JG.4 Alias of XBB.1.9.2.5.1.3.4, C1684T, Europe EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R, from #2117 JJ.1 Alias of XBB.1.9.2.5.1.4.1, S:L455F, ORF3a:I47V, China/Japan, from #2208 @@ -3229,14 +3229,14 @@ HV.1.4 Alias of XBB.1.9.2.5.1.6.1.4, S:A1078S, USA, from sars-cov-2-variants/lin HV.1.5 Alias of XBB.1.9.2.5.1.6.1.5, S:L1265F, USA/Canada, from sars-cov-2-variants/lineage-proposals#957 HV.1.6 Alias of XBB.1.9.2.5.1.6.1.6, ORF1a:T1794I, ORF1a:P2018S, Canada/USA HV.1.6.1 Alias of XBB.1.9.2.5.1.6.1.6.1, S:S704L, Canada, from sars-cov-2-variants/lineage-proposals#957 -KL.1 Alias of XBB.1.9.2.5.1.6.1.6.1.1, S:K444N, Canada +KL.1 Alias of XBB.1.9.2.5.1.6.1.6.1.1, S:K444N, Canada, from sars-cov-2-variants/lineage-proposals#1174 KL.1.1 Alias of XBB.1.9.2.5.1.6.1.6.1.1.1, S:H1101Y, Canada HV.1.7 Alias of XBB.1.9.2.5.1.6.1.7, S:S221L, Canada, from sars-cov-2-variants/lineage-proposals#957 -HV.1.8 Alias of XBB.1.9.2.5.1.6.1.8, S:T208M, USA -HV.1.9 Alias of XBB.1.9.2.5.1.6.1.9, S:N211I, S:T1117I, New Zealand -HV.1.10 Alias of XBB.1.9.2.5.1.6.1.10, S:R452W, USA +HV.1.8 Alias of XBB.1.9.2.5.1.6.1.8, S:T208M, USA, from #2432 +HV.1.9 Alias of XBB.1.9.2.5.1.6.1.9, S:N211I, S:T1117I, New Zealand, from sars-cov-2-variants/lineage-proposals#957 +HV.1.10 Alias of XBB.1.9.2.5.1.6.1.10, S:R452W, USA, from sars-cov-2-variants/lineage-proposals#1044 HV.1.11 Alias of XBB.1.9.2.5.1.6.1.11, S:N450D, USA -HV.2 Alias of XBB.1.9.2.5.1.6.2, S:L455F, Canada +HV.2 Alias of XBB.1.9.2.5.1.6.2, S:L455F, Canada, from sars-cov-2-variants/lineage-proposals#537 EG.5.1.7 Alias of XBB.1.9.2.5.1.7, S:K278N EG.5.1.8 Alias of XBB.1.9.2.5.1.8, S:L455F, China, on C29762T branch, from sars-cov-2-variants/lineage-proposals#537 KB.1 Alias of XBB.1.9.2.5.1.8.1, S:E654V, China, from #2347 @@ -3266,7 +3266,7 @@ EG.6 Alias of XBB.1.9.2.6, C1684T, Israel EG.6.1 Alias of XBB.1.9.2.6.1, S:456L (T22928C), Israel/Japan/Canada, from #1950 EG.6.1.1 Alias of XBB.1.9.2.6.1.1, S:484K, S:L242I, from sars-cov-2-variants/lineage-proposals#546 EG.6.1.2 Alias of XBB.1.9.2.6.1.2, S:V705I, Israel, from sars-cov-2-variants/lineage-proposals#826 -EG.7 Alias of XBB.1.9.2.7, S:R403K, S:L513F, ORF1a:N2531S, Germany/England +EG.7 Alias of XBB.1.9.2.7, S:R403K, S:L513F, ORF1a:N2531S, Germany/England, from sars-cov-2-variants/lineage-proposals#56 EG.8 Alias of XBB.1.9.2.8, ORF1a:S2303F, Europe EG.9 Alias of XBB.1.9.2.9, S:403K, ORF1a:T1474I, ORF1b:N969S, from sars-cov-2-variants/lineage-proposals#280 EG.9.1 Alias of XBB.1.9.2.9.1, S:A344T, C13767T, from sars-cov-2-variants/lineage-proposals#57 @@ -3289,7 +3289,7 @@ XBB.1.10 USA/Japan, S:A852V, S:R403K, pre ORF8:8* XBB.1.11 Indonesia/Malaysia/Singapore/USA, C13968A and G16377A, from #1490 XBB.1.11.1 Indonesia/Malaysia/Singapore, S:S486P, from #1490 FP.1 Alias of XBB.1.11.1.1, A6616G, C21642T, following ORF1a:T2016I, Singapore, from #1847 -FP.2 Alias of XBB.1.11.1.2, S:F186S, ORF1a:V3078I, Indonesia/Malaysia/Singapore +FP.2 Alias of XBB.1.11.1.2, S:F186S, ORF1a:V3078I, Indonesia/Malaysia/Singapore, from sars-cov-2-variants/lineage-proposals#31 FP.2.1 Alias of XBB.1.11.1.2.1, S:478R, ORF1a:I693T, ORF1a:T951A, ORF3a:W149C, Indonesia, from #2012 FP.2.1.1 Alias of XBB.1.11.1.2.1.1, S:L452Q, USA/Austria, from sars-cov-2-variants/lineage-proposals#329 FP.2.1.2 Alias of XBB.1.11.1.2.1.2, S:P521S, Indonesia @@ -3333,10 +3333,10 @@ XBB.1.16.5 Defined by T9991C,C16332T, India, from #1983 XBB.1.16.6 S:F456L (T22930A), A12397G, USA/Canada/China JF.1 Alias of XBB.1.16.6.1, S:L455F, USA, from #2207 JF.1.1 Alias of XBB.1.16.6.1.1, ORF1a:S2030L -JF.1.1.1 Alias of XBB.1.16.6.1.1.1, S:A475V, ORF1a:P2005S, Canada +JF.1.1.1 Alias of XBB.1.16.6.1.1.1, S:A475V, ORF1a:P2005S, Canada, from sars-cov-2-variants/lineage-proposals#643 JF.1.1.2 Alias of XBB.1.16.6.1.1.2, S:V1264L JF.2 Alias of XBB.1.16.6.2, S:Q675H, USA/Wales, from sars-cov-2-variants/lineage-proposals#457 -JF.3 Alias of XBB.1.16.6.3, S:L455F, S:Q14H, S:S810L, USA/Australia +JF.3 Alias of XBB.1.16.6.3, S:L455F, S:Q14H, S:S810L, USA/Australia, from sars-cov-2-variants/lineage-proposals#976 JF.4 Alias of XBB.1.16.6.4, ORF1a:S212L, ORF8:A15V XBB.1.16.7 S:T732I after T12214C, Singapore/Japan/SouthKorea XBB.1.16.8 S:T732I after C28531T, India/USA/China/Australia @@ -3364,9 +3364,9 @@ XBB.1.16.24 S:K182E, S:V551I, S:E554K, on A25410G branch, India, from #2223 XBB.1.16.25 ORF1a:K510E, C16611T, A29221G XBB.1.16.26 S:L455F, S:F456L, China, from sars-cov-2-variants/lineage-proposals#685 XBB.1.16.27 S:F456L, S:E554K, ORF1a:A3889T, France, from #2345 -XBB.1.16.28 S:V1230A, S:Q613H, S:Q675K, Russia -XBB.1.16.29 S:T883I, on C7765T branch, TrinidadTobago -XBB.1.16.30 S:E554Q, on C7765T branch, USA/Germany +XBB.1.16.28 S:V1230A, S:Q613H, S:Q675K, Russia, from sars-cov-2-variants/lineage-proposals#1000 +XBB.1.16.29 S:T883I, on C7765T branch, TrinidadTobago, from sars-cov-2-variants/lineage-proposals#524 +XBB.1.16.30 S:E554Q, on C7765T branch, USA/Germany, from sars-cov-2-variants/lineage-proposals#554 XBB.1.16.31 T9004C, on C7765T branch XBB.1.16.32 S:S490P, South Africa/USA KJ.1 Alias of XBB.1.16.32.1, S:T573I, ORF1a:P1659L, South Africa @@ -3432,7 +3432,7 @@ XBB.1.22.1 Defined by S:Y200C, from #1704 FY.1 Alias of XBB.1.22.1.1, Defined by ORF1b:D1782N FY.1.1 Alias of XBB.1.22.1.1.1, S:A83S, Malaysia/Japan FY.1.2 Alias of XBB.1.22.1.1.2, S:T572I, ORF1b:P218L, Europe -FY.1.2.1 Alias of XBB.1.22.1.1.2.1, S:W64L +FY.1.2.1 Alias of XBB.1.22.1.1.2.1, S:W64L, from sars-cov-2-variants/lineage-proposals#863 FY.1.2.2 Alias of XBB.1.22.1.1.2.2, S:V1129I FY.1.2.3 Alias of XBB.1.22.1.1.2.3, S:D215H FY.1.3 Alias of XBB.1.22.1.1.3, S:E583D, South Korea @@ -3482,7 +3482,7 @@ XBB.1.28 Defined by S:403K, Europe, from #1757 XBB.1.28.1 Defined by S:356T, Indonesia, global FW.1 Alias of XBB.1.28.1.1, S:A701V, Indonesia, Europe FW.1.1 Alias of XBB.1.28.1.1.1, S:N148T, UK -FW.1.1.1 Alias of XBB.1.28.1.1.1.1, S:A684T, ORF1a:S2285F, ORF1a:K3353R, UK +FW.1.1.1 Alias of XBB.1.28.1.1.1.1, S:A684T, ORF1a:S2285F, ORF1a:K3353R, UK, from sars-cov-2-variants/lineage-proposals#1242 FW.2 Alias of XBB.1.28.1.2, ORF1a:G2258C, France FW.3 Alias of XBB.1.28.1.3, ORF1a:D2627N XBB.1.29 Defined by ORF1a:L3829F, S:A292S, Europe @@ -3593,7 +3593,7 @@ XBB.2.3.10 T5947C, India GE.1 Alias of XBB.2.3.10.1, S:K478R, from #1866 GE.1.1 Alias of XBB.2.3.10.1.1, S:E554K, Bangladesh/Singapore, from sars-cov-2-variants/lineage-proposals#367 GE.1.2 Alias of XBB.2.3.10.1.2, S:N148T, Kenya, from sars-cov-2-variants/lineage-proposals#200 -GE.1.2.1 Alias of XBB.2.3.10.1.2.1, S:478T, S:A376S +GE.1.2.1 Alias of XBB.2.3.10.1.2.1, S:478T, S:A376S, from sars-cov-2-variants/lineage-proposals#1103 GE.1.3 Alias of XBB.2.3.10.1.3, S:T732I, from sars-cov-2-variants/lineage-proposals#102 GE.1.4 Alias of XBB.2.3.10.1.4, ORF1a:P3359S GE.1.5 Alias of XBB.2.3.10.1.5, G6352A, C11653T, T16242A @@ -3625,7 +3625,7 @@ XBB.2.3.19 S:G184V, ORF1a:P1786L, India JY.1 Alias of XBB.2.3.19.1, S:E654K, S:K478T (rev), India, from sars-cov-2-variants/lineage-proposals#731 JY.1.1 Alias of XBB.2.3.19.1.1, S:T1117K XBB.2.3.20 N:A267S, S:210del, Bangladesh, from sars-cov-2-variants/lineage-proposals#328 -XBB.2.3.21 S:T883I, ORF1a:D3042N, 670T reversion, Japan +XBB.2.3.21 S:T883I, ORF1a:D3042N, 670T reversion, Japan, from sars-cov-2-variants/lineage-proposals#281 XBB.2.3.22 S:S937T, ORF8:K94T, Romania/Bulgaria XBB.2.4 Defined by S:S486P, Spain/Denmark/Germany, from #1603 and #1518 XBB.2.5 S:Q613H, from https://github.com/jmcbroome/auto-pango-designation/pull/193 @@ -3686,7 +3686,7 @@ XBC.1.6.4 ORF1a:V1117I, T20286C, Australia XBC.1.6.5 ORF7a:Q90*, C1594T, C15601T, Australia, from sars-cov-2-variants/lineage-proposals#479 XBC.1.6.6 T8707C, C26735T, Australia JT.1 Alias of XBC.1.6.6.1, S:V445A, from sars-cov-2-variants/lineage-proposals#203 -XBC.1.7 S:478R, S:444T, Philippines/Australia/Hong Kong +XBC.1.7 S:478R, S:444T, Philippines/Australia/Hong Kong, from sars-cov-2-variants/lineage-proposals#110 XBC.1.7.1 S:N185S, Philiippines XBC.1.7.2 S:T299I, Australia XBC.2 Mostly Philippines, defined by S:K97R @@ -3721,7 +3721,7 @@ XBL Recombinant lineage of XBB.1.5.57-BA.2.75* (short segment from ~1k-~5k)-XBB. XBL.1 S:V635I, T2461C XBL.2 A1393G XBL.3 C11824T, G14400T -XBL.3.1 S:I726V, C10252T, G29702A, Singapore/South Korea/Thailand +XBL.3.1 S:I726V, C10252T, G29702A, Singapore/South Korea/Thailand, from sars-cov-2-variants/lineage-proposals#44 XBM Recombinant lineage of BA.2.76 and BF.3, India/USA/Canada, from #1441 XBN Recombinant lineage of BA.2.75 and XBB.3, mainly found in USA, from #1296 XBP Recombinant lineage of BA.2.75* and BQ.1*, predominantly in England and Canada, from #1393 @@ -3763,17 +3763,17 @@ XCW Recombinant lineage of XBB.2.3.20, XBB.1.16.15 (breakpoint 22996-27430), Ind XCY Recombinant lineage of EG.5.1.3, GK.4 (or GK.3.1) (breakpoint 21719-22569), France, from sars-cov-2-variants/lineage-proposals#887 XCZ Recombinant lineage of EG.5.1.1, GK.1.1 (breakpoint 18492-21718), France/Italy/England, from sars-cov-2-variants/lineage-proposals#839 XDA Recombinant lineage of XBB.1.16, HN.5 (breakpoint 22102-22927), from sars-cov-2-variants/lineage-proposals#862 -XDA.1 S:L176F +XDA.1 S:L176F, from sars-cov-2-variants/lineage-proposals#1031 XDB Recombinant lineage of XBB.1.16.19, non-XBB.1.16/EG.5/XBB.2.3 XBB (breakpoint ~28000, depending on donor), Indonesia, from sars-cov-2-variants/lineage-proposals#969 XDC Recombinant lineage of HK.3, XBB.1.16 (breakpoint 22996-27506), China/Singapore, from sars-cov-2-variants/lineage-proposals#902 XDD Recombinant lineage of EG.5.1.1, JN.1, EG.5.1.1 (breakpoints at 6541-7842 and 25416-26270), USA/France/Spain, from sars-cov-2-variants/lineage-proposals#1024 -XDD.1 S:S704L -XDD.1.1 S:I584V -XDD.2 S:T307I +XDD.1 S:S704L, from sars-cov-2-variants/lineage-proposals#1203 +XDD.1.1 S:I584V, from sars-cov-2-variants/lineage-proposals#1203 +XDD.2 S:T307I, from sars-cov-2-variants/lineage-proposals#1176 XDE Recombinant lineage of GW.5.1 and FL.13.4 (breakpoint at 24034-24046), Pakistan, from #2352 XDF Recombinant lineage of XBB* (with C335T) and EG.5.1.3 (breakpoint around 2335-9692), from sars-cov-2-variants/lineage-proposals#1088 XDG Recombinant lineage of FL.37 and EG.5.2.4 (breakpoint at 6729-9693), from #2348 -XDH Recombinant lineage of BN.1.2.8 and XBB.1.9.1 (or XBB.1.22) (breakpoint between 22630-22663), Lithuania/Belarus +XDH Recombinant lineage of BN.1.2.8 and XBB.1.9.1 (or XBB.1.22) (breakpoint between 22630-22663), Lithuania/Belarus, from sars-cov-2-variants/lineage-proposals#128 XDJ Recombinant lineage of XBB.1.16.6 and HK.3.1 (breakpoint between 14857 and 16877), France, from sars-cov-2-variants/lineage-proposals#997 XDK Recombinant lineage of XBB.1.16.11 (likely) and JN.1.1.1 (breakpoint between 5315 and 6182), France, from #2415 XDL Recombinant lineage of EG.5.1.1 and non-EG.5 (breakpoint between 25573-29624) with S:L455F and S:I1114T, China, from #2351