diff --git a/lineage_notes.txt b/lineage_notes.txt index db6b3911..31004927 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1200,6 +1200,7 @@ LF.1.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1.1, S:S31-, T19209C,from sars-cov-2 LF.2 Alias of B.1.1.529.2.86.1.1.16.1.2, ORF1a:K247R, ORF3a:Y184H, many with S:S31del LF.3 Alias of B.1.1.529.2.86.1.1.16.1.3, ORF1a:A4285V, Peru LF.3.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1, S:445P,from sars-cov-2-variants/lineage-proposals#1558 +LF.3.1.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1.1, S:L1143F, USA-CO JN.1.16.2 Alias of B.1.1.529.2.86.1.1.16.2, C4777T LA.1 Alias of B.1.1.529.2.86.1.1.16.2.1, S:R346T LA.2 Alias of B.1.1.529.2.86.1.1.16.2.2, S:R346I diff --git a/lineages.csv b/lineages.csv index 66c5f8f6..3b646f30 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2553443,9 +2553443,6 @@ USA/CA-KP002357/2024,LF.3.1 USA/CA-MCPHL-GBD00272/2024,LF.3.1 USA/CA-KP002380/2024,LF.3.1 USA/2024CV0744/2024,LF.3.1 -USA/LA-EVTL22100/2024,LF.3.1 -USA/CA-KP002359/2024,LF.3.1 -USA/MD-CDC-LC1104731/2024,LF.3.1 Australia/WA16118/2024,KP.3.1.2 England/CLIMB-CM7YR1M8/2024,KP.3.1.2 England/CLIMB-CM7YFJ6D/2024,KP.3.1.2 @@ -2559579,3 +2559576,58 @@ Spain/CL-47259/2024,XDY France/NAQ-HCL724000194501/2024,XDY Spain/GA-CHUAC-12392/2024,XDY Spain/CL-47110/2024,XDY +USA/CO-CDPHE-41968339/2024,LF.3.1.1 +USA/CO-CDPHE-41969209/2024,LF.3.1.1 +USA/CO-CDPHE-41933844/2024,LF.3.1.1 +USA/CO-CDPHE-41969205/2024,LF.3.1.1 +USA/LA-EVTL22100/2024,LF.3.1.1 +USA/MD-MDH-9952/2024,LF.3.1.1 +USA/CA-CDPH-500137620/2024,LF.3.1.1 +USA/CA-CDPH-500137805/2024,LF.3.1.1 +USA/CO-CDPHE-41969207/2024,LF.3.1.1 +USA/CO-CDPHE-41969217/2024,LF.3.1.1 +USA/CA-KP002359/2024,LF.3.1.1 +USA/CO-CDPHE-41968343/2024,LF.3.1.1 +USA/CA-GBW-GKPLAAAA20096/2024,LF.3.1.1 +USA/CA-GBW-GKISBBBC04801/2024,LF.3.1.1 +USA/CO-CDPHE-41969211/2024,LF.3.1.1 +USA/CO-CDPHE-41969223/2024,LF.3.1.1 +USA/CO-CDPHE-41969229/2024,LF.3.1.1 +USA/NM-CDC-LC1105959/2024,LF.3.1.1 +USA/CO-CDPHE-41968569/2024,LF.3.1.1 +USA/CO-CDPHE-41968341/2024,LF.3.1.1 +USA/CO-CDPHE-41969201/2024,LF.3.1.1 +USA/CO-CDPHE-41969199/2024,LF.3.1.1 +USA/CO-CDPHE-41969197/2024,LF.3.1.1 +USA/CO-CDPHE-41933754/2024,LF.3.1.1 +USA/CO-CDPHE-41969227/2024,LF.3.1.1 +USA/CO-CDPHE-41969203/2024,LF.3.1.1 +USA/CO-CDPHE-41968573/2024,LF.3.1.1 +USA/CO-CDPHE-41933786/2024,LF.3.1.1 +USA/CO-CDPHE-41915541/2024,LF.3.1.1 +USA/CO-CDPHE-41915601/2024,LF.3.1.1 +USA/CA-CDPH-500137967/2024,LF.3.1.1 +USA/CO-CDPHE-41968577/2024,LF.3.1.1 +USA/CO-CDPHE-41969213/2024,LF.3.1.1 +USA/CO-CDPHE-41968571/2024,LF.3.1.1 +USA/CO-CDPHE-41969219/2024,LF.3.1.1 +USA/CO-CDPHE-41969225/2024,LF.3.1.1 +USA/HI-TAMC_3501/2024,LF.3.1.1 +USA/TX-HMH-M-141269/2024,LF.3.1.1 +USA/CO-CDPHE-41933898/2024,LF.3.1.1 +USA/CO-CDPHE-41933866/2024,LF.3.1.1 +USA/CO-CDPHE-41954542/2024,LF.3.1.1 +USA/CO-CDPHE-41954593/2024,LF.3.1.1 +USA/OH-PLMI-JF8V-826/2024,LF.3.1.1 +USA/MD-CDC-LC1104731/2024,LF.3.1.1 +USA/WA-GBW-GKISBBBC19465/2024,LF.3.1.1 +USA/WA-GBW-GKPLAAAA22923/2024,LF.3.1.1 +USA/OH-ODH-SC4032127/2024,LF.3.1.1 +England/CLIMB-CM7YGWRK/2024,LF.3.1.1 +USA/OH-ODH-SC4032026/2024,LF.3.1.1 +USA/GA-GPHL-0588/2024,LF.3.1.1 +USA/CO-CDPHE-41934022/2024,LF.3.1.1 +USA/CO-CDPHE-41968419/2024,LF.3.1.1 +USA/CO-CDPHE-41968403/2024,LF.3.1.1 +USA/CO-CDPHE-41968472/2024,LF.3.1.1 +USA/CO-CDPHE-41968464/2024,LF.3.1.1