From af07cc3b4c2a7db98ef2ca1505f00934b5fb7c33 Mon Sep 17 00:00:00 2001 From: InfrPopGen Date: Tue, 11 Apr 2023 16:08:46 +0100 Subject: [PATCH] Added new lineage CH.1.1.23 from #1862 with 21 new sequence designations, and 3 updated from CH.1.1 --- lineage_notes.txt | 1 + lineages.csv | 27 ++++++++++++++++++++++++--- 2 files changed, 25 insertions(+), 3 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index b31d2b93..a8a2633a 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -888,6 +888,7 @@ FJ.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.19.1, ORF1a:A1204V, England CH.1.1.20 Alias of B.1.1.529.2.75.3.4.1.1.1.1.20, England, T299I, R403K, D1165G, from #1736 CH.1.1.21 Alias of B.1.1.529.2.75.3.4.1.1.1.1.21, England, S:N481Y, from #1799 CH.1.1.22 Alias of B.1.1.529.2.75.3.4.1.1.1.1.22, found mainly in Denmark, from pango-designation issue #1670 +CH.1.1.23 Alias of B.1.1.529.2.75.3.4.1.1.1.1.23, found mainly in UK, from pango-designation issue #1862 CH.2 Alias of B.1.1.529.2.75.3.4.1.1.2, defined by S:Q183H CH.3 Alias of B.1.1.529.2.75.3.4.1.1.3, defined by S:486P on ORF1b:Q2425R branch CH.3.1 Alias of B.1.1.529.2.75.3.4.1.1.3.1, S:S494P, Australia/Indonesia, from #1421 diff --git a/lineages.csv b/lineages.csv index 5d19550c..cb51980a 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2255492,7 +2255492,7 @@ England/LSPA-3261ECDF/2022,CH.1.1 Ireland/CW-Enfer-020123002_D2/2023,CH.1.1 Australia/QLD0x012F4E/2023,FK.1 France/HDF-IPP-04428/2023,CH.1.1 -England/BRBR-326F2460/2023,CH.1.1 +England/BRBR-326F2460/2023,CH.1.1.23 Australia/WA11011/2023,CH.1.1 USA/VA-CDC-LC0969132/2022,CH.1.1 Netherlands/NH-RIVM-122956/2022,CH.1.1 @@ -2260530,7 +2260530,7 @@ Japan/TKYmbc17516/2022,CH.1.1 Japan/PG-448950/2023,CH.1.1 England/PHEP-YYGKP4R/2023,CH.1.1 Thailand/CU-A221563/2022,CH.1.1 -England/BRBR-3268B754/2023,CH.1.1 +England/BRBR-3268B754/2023,CH.1.1.23 Germany/NI-RKI-I-1108799/2023,CH.1.1 Japan/TKYmbc32170/2023,CH.1.1 Slovenia/1074/2023,CH.1.1 @@ -2260789,7 +2260789,7 @@ Germany/BY-RKI-I-1091101/2023,CH.1.1 Netherlands/ZH-RIVM-126486/2023,CH.1.1 Canada/ON-PHL-11356/2023,CH.1.1 Netherlands/ZH-RIVM-124506/2023,CH.1.1 -England/BRBR-326F1A23/2023,CH.1.1 +England/BRBR-326F1A23/2023,CH.1.1.23 England/BRBR-326AE65E/2023,CH.1.1 USA/CA-LACPHL-AF17331/2022,CH.1.1 England/LSPA-3266F8EA/2022,CH.1.1 @@ -2364988,3 +2364988,24 @@ Japan/PG-458956/2023,BF.42 Japan/PG-462812/2023,BF.42 Japan/PG-462783/2023,BF.42 Japan/PG-462968/2023,BF.42 +England/QEUH-326DA3E9/2023,CH.1.1.23 +England/BRBR-326FF07E/2023,CH.1.1.23 +England/BRBR-326E3927/2023,CH.1.1.23 +England/PHEC-YYEG3UC/2023,CH.1.1.23 +Netherlands/UT-RIVM-127961/2023,CH.1.1.23 +England/BRBR-326F1971/2023,CH.1.1.23 +England/PHEC-YYEK8T4/2023,CH.1.1.23 +England/BRBR-326E24BE/2023,CH.1.1.23 +England/BRBR-32705153/2023,CH.1.1.23 +England/PHEC-YYEKJ9H/2023,CH.1.1.23 +England/BRBR-326E21F3/2023,CH.1.1.23 +Iceland/L-3747/2023,CH.1.1.23 +England/BRBR-326FF25A/2023,CH.1.1.23 +Australia/SA525062/2023,CH.1.1.23 +England/QEUH-326CCCFE/2023,CH.1.1.23 +England/PHEC-YYEMYDH/2023,CH.1.1.23 +England/BRBR-326D2E95/2023,CH.1.1.23 +England/BRBR-326DD0A3/2023,CH.1.1.23 +England/BRBR-3270A73E/2023,CH.1.1.23 +Australia/SA523008/2023,CH.1.1.23 +England/BRBR-32690482/2023,CH.1.1.23