diff --git a/lineage_notes.txt b/lineage_notes.txt index ccf36d20..888d0c5e 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1402,7 +1402,8 @@ BQ.1.1.70 Alias of B.1.1.529.5.3.1.1.1.1.1.1.70 Japan, ORF1a:A903V, M:S212G, fro BQ.1.1.71 Alias of B.1.1.529.5.3.1.1.1.1.1.1.71 found in England, from pango-designation issue #1713 EV.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.71.1 S:Y248H, England BQ.1.1.72 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72 ORF1b:D100A -BQ.1.1.73 B.1.1.529.5.3.1.1.1.1.1.1.73, found mainly in Canada and Spain, from pango-designation issue #1740 +BQ.1.1.73 Alias of B.1.1.529.5.3.1.1.1.1.1.1.73, found mainly in Canada and Spain, from pango-designation issue #1740 +BQ.1.1.74 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74, found mainly in Botswana and UK, from pango-designation issue #1817 FC.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72.1 S:478R, Indonesia BQ.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2, found globally, defined by S:I666V, from issue #1082 BQ.1.2.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1 found mainly in Japan, SouthKorea and Mongolia, from pango-designation issue #1392 diff --git a/lineages.csv b/lineages.csv index fef1e99c..0886911f 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2238439,7 +2238439,7 @@ Japan/TKYmbc14747/2022,BQ.1.1 Germany/BY-RKI-I-1100147/2023,BQ.1.1 Sweden/38605581XXP/2022,BQ.1.1 Canada/ON-PHL-22-54370/2022,BQ.1.1 -England/PHEC-YYER574/2023,BQ.1.1 +England/PHEC-YYER574/2023,BQ.1.1.74 USA/MN-MDH-34264/2023,BQ.1.1 France/IDF-LBZCentre-L2210240034/2022,BQ.1.1 Canada/SK-RRPL-578216/2022,BQ.1.1 @@ -2241135,7 +2241135,7 @@ USA/MI-UM-10048405817/2022,BQ.1.1 Italy/VEN-ULSS3GEN-7002493312_VE/2023,BQ.1.1 Canada/ON-PHL-22-49322/2022,BQ.1.1 Germany/HH-RKI-I-1083900/2022,BQ.1.1 -USA/HI-H2218081/2022,BQ.1.1 +USA/HI-H2218081/2022,BQ.1.1.74 Germany/BW-RKI-I-1100409/2023,BQ.1.1 France/OCC-ChuMtp-99222993961/2022,BQ.1.1 Netherlands/ZH-RIVM-123393/2022,BQ.1.1 @@ -2241242,7 +2241242,7 @@ France/GES-IPP-03579/2023,BQ.1.1 USA/IL-RIPHL_13324_G/2023,BQ.1.1 Brazil/RJ-LNN11266/2023,BQ.1.1 USA/TN-SPHL-4641/2022,BQ.1.1 -England/PHEC-YYERTAQ/2023,BQ.1.1 +England/PHEC-YYERTAQ/2023,BQ.1.1.74 USA/CA-CDPH-6000014380/2022,BQ.1.1 Germany/BE-RKI-I-1067376/2022,BQ.1.1 Canada/ON-PHL-23-15775/2023,BQ.1.1 @@ -2241348,7 +2241348,7 @@ France/PAC-GENBIO-P49GN3320068/2022,BQ.1.1 USA/FL-CDC-LC0966825/2022,BQ.1.1 Netherlands/LI-RIVM-116516/2022,BQ.1.1 Germany/ST-MD11627/2022,BQ.1.1 -Austria/AGES-1116241/2023,BQ.1.1 +Austria/AGES-1116241/2023,BQ.1.1.74 Denmark/DCGC-628541/2022,BQ.1.1 France/ARA-HCL022206702901/2022,BQ.1.1 Germany/NW-RKI-I-1074742/2022,BQ.1.1 @@ -2241370,7 +2241370,7 @@ Germany/BW-RKI-I-1076534/2022,BQ.1.1 Germany/BW-RKI-I-1073197/2022,BQ.1.1 USA/NC-CDC-LC0968108/2022,BQ.1.1 Denmark/DCGC-613761/2022,BQ.1.1 -England/PHEC-YYE8JR3/2023,BQ.1.1 +England/PHEC-YYE8JR3/2023,BQ.1.1.74 Brazil/BA-FIOCRUZ-28929/2022,BQ.1.1 USA/NC-CORVASEQ-1085-8526-z/2022,BQ.1.1 Sweden/49221494987/2022,BQ.1.1 @@ -2242777,7 +2242777,7 @@ USA/NC-CDC-LC0981070/2023,BQ.1.1 Canada/ON-PHL-22-59399/2022,BQ.1.1 Spain/MC-HCUVA-11074154/2022,BQ.1.1 France/GES-HMN-22122090068/2022,BQ.1.1 -Botswana/R196B76_BHP_1099747/2022,BQ.1.1 +Botswana/R196B76_BHP_1099747/2022,BQ.1.1.74 Brazil/SP-NVBS25648GENOV852175162553/2022,BQ.1.1 France/IDF-LBZCentre-WA2210170063/2022,BQ.1.1 Spain/MD-H12O_2324/2023,BQ.1.1 @@ -2364026,3 +2364026,73 @@ Germany/NW-RKI-I-1115329/2023,FL.2 Germany/SH-RKI-I-1117519/2023,FL.2 Germany/NW-RKI-I-1124338/2023,FL.2 Germany/SH-RKI-I-1117530/2023,FL.2 +Botswana/R198B58_BHP_AAC91293/2022,BQ.1.1.74 +England/PHEC-YYEPWJA/2023,BQ.1.1.74 +France/ARA-GENBIO-14292772270/2022,BQ.1.1.74 +Botswana/R194B16_BHP_122082431/2022,BQ.1.1.74 +England/PHEC-YYERKJW/2023,BQ.1.1.74 +England/PHEC-YYE8JB9/2023,BQ.1.1.74 +England/PHEC-YYERWRW/2023,BQ.1.1.74 +USA/GA-GBW-VWPOAAAZ535528/2022,BQ.1.1.74 +Luxembourg/LNS2876500/2022,BQ.1.1.74 +England/PHEC-YYEPU87/2023,BQ.1.1.74 +Reunion/ChuReu-723011469901/2023,BQ.1.1.74 +England/PHEC-YYEGHFG/2023,BQ.1.1.74 +England/PHEC-YYEMRHF/2023,BQ.1.1.74 +USA/CA-CDC-QDX47594942/2023,BQ.1.1.74 +England/PHEC-YYEDG18/2023,BQ.1.1.74 +England/PHEP-YYF5KDW/2022,BQ.1.1.74 +Japan/IC-15011/2022,BQ.1.1.74 +England/BRBR-327021DE/2023,BQ.1.1.74 +England/BRBR-327022BD/2023,BQ.1.1.74 +England/BRBR-3270BAE9/2023,BQ.1.1.74 +England/PHEC-YYERKXE/2023,BQ.1.1.74 +USA/CA-CDPH-500085924/2022,BQ.1.1.74 +USA/CA-CDPH-500104763/2023,BQ.1.1.74 +England/PHEC-YYEMP88/2023,BQ.1.1.74 +USA/HI-H2218028/2022,BQ.1.1.74 +England/PHEC-YYERTQD/2023,BQ.1.1.74 +England/PHEC-YYEN78J/2023,BQ.1.1.74 +Luxembourg/LNS3568430/2022,BQ.1.1.74 +England/BRBR-32709605/2023,BQ.1.1.74 +Botswana/R198B66_BHP_122084310/2022,BQ.1.1.74 +USA/CA-CDPH-FS48100422/2023,BQ.1.1.74 +England/BRBR-327020D1/2023,BQ.1.1.74 +England/PHEC-YYEMFM8/2023,BQ.1.1.74 +England/PHEC-YYEJNI3/2023,BQ.1.1.74 +Austria/AGES-1116364/2023,BQ.1.1.74 +USA/CA-CDPH-FS48100429/2023,BQ.1.1.74 +England/BRBR-32702059/2023,BQ.1.1.74 +England/PHEC-YYEM57C/2023,BQ.1.1.74 +USA/CA-CDPH-500103536/2023,BQ.1.1.74 +England/PHEC-YYEK1I8/2023,BQ.1.1.74 +England/BRBR-3270BD59/2023,BQ.1.1.74 +USA/CA-CDC-QDX46011088/2023,BQ.1.1.74 +Botswana/R199B07_BHP_122085578/2022,BQ.1.1.74 +USA/NY-GBW-VWPOAAAZ169032/2022,BQ.1.1.74 +England/PHEC-YYE8JN7/2023,BQ.1.1.74 +England/PHEC-YYEPTOC/2023,BQ.1.1.74 +Japan/IC-15159/2022,BQ.1.1.74 +England/PHEC-YY8J6WY/2022,BQ.1.1.74 +England/PHEC-YYE8E9D/2023,BQ.1.1.74 +Botswana/R200B28_BHP_123000662/2023,BQ.1.1.74 +England/PHEC-YYEG4TX/2023,BQ.1.1.74 +England/PHEC-YYEKCD1/2023,BQ.1.1.74 +England/PHEC-YYEPM6S/2023,BQ.1.1.74 +USA/CA-CDPH-500103884/2023,BQ.1.1.74 +USA/CA-CCPHL-4530/2023,BQ.1.1.74 +USA/CA-CDPH-FS47315652/2023,BQ.1.1.74 +USA/CA-CDPH-500103870/2023,BQ.1.1.74 +USA/CA-CDPH-500103829/2023,BQ.1.1.74 +Mauritius/CHL-9273/2023,BQ.1.1.74 +Botswana/R199B10_BHP_122085966/2022,BQ.1.1.74 +USA/CA-CDPH-500103948/2023,BQ.1.1.74 +England/QEUH-326CC274/2023,BQ.1.1.74 +India/TG-CDFD-MMG-508/2023,BQ.1.1.74 +USA/CA-CDPH-FS48098388/2023,BQ.1.1.74 +USA/HI-H2218300/2022,BQ.1.1.74 +England/PHEC-YYERTS1/2023,BQ.1.1.74 +USA/CA-CDPH-FS48098381/2023,BQ.1.1.74 +Reunion/ChuReu-723011469801/2023,BQ.1.1.74 +USA/NY-GBW-VWPOAAAZ516370/2022,BQ.1.1.74 +USA/CA-CDPH-500103027/2023,BQ.1.1.74