From 56ca02e122c5b655a2b7f330136c5cb5ae27cc16 Mon Sep 17 00:00:00 2001 From: InfrPopGen Date: Thu, 12 Jan 2023 21:45:11 +0000 Subject: [PATCH] Added new lineage DU.1 from #1540 with 56 new sequence designations, and 0 updated --- lineage_notes.txt | 1 + lineages.csv | 57 +++++++++++++++++++++++++++++++- pango_designation/alias_key.json | 1 + 3 files changed, 58 insertions(+), 1 deletion(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index a1f0d6ed..10dbc145 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1150,6 +1150,7 @@ BQ.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1, found globally, defining mutations OR BQ.1.1.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.1, Europe, ORF1b:V1639A CZ.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.1.1, England/SouthKorea/Romania, S:F490I BQ.1.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.2, England, S:D253G, from issue #1209 +DU.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.2.1 found mainly in UK, from pango-designation issue #1540 BQ.1.1.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.3, England, A15111G DR.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.3.1, found mainly in USA, from pango-designation issue #1420 BQ.1.1.4 Alias of B.1.1.529.5.3.1.1.1.1.1.1.4, T29173C diff --git a/lineages.csv b/lineages.csv index a0c2215d..501f8d11 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2134179,4 +2134179,59 @@ New_Zealand/22ZA5100/2022,BN.1.5.1 New_Zealand/22ZA4413/2022,BN.1.5.1 New_Zealand/22ZA4286/2022,BN.1.5.1 NewZealand/22ZA4286/2022,BN.1.5.1 - +England/BRBR-32637E61/2022,DU.1 +England/LSPA-32620D5F/2022,DU.1 +England/LSPA-32622018/2022,DU.1 +England/LSPA-32620E5C/2022,DU.1 +England/LSPA-326322D3/2022,DU.1 +England/LSPA-326326D7/2022,DU.1 +England/LSPA-32632B23/2022,DU.1 +England/PHEC-YY8Q7YY/2022,DU.1 +England/PHEC-YY8WGKS/2022,DU.1 +England/PHEC-YY8WTUA/2022,DU.1 +England/LSPA-32633F80/2022,DU.1 +England/PHEC-YY8WGE4/2022,DU.1 +England/PHEC-YY8OSYN/2022,DU.1 +England/LSPA-326335BB/2022,DU.1 +England/LSPA-3262C11B/2022,DU.1 +England/PHEC-YY81TON/2022,DU.1 +England/LSPA-326202D8/2022,DU.1 +England/LSPA-32620DE6/2022,DU.1 +England/LSPA-32620B37/2022,DU.1 +England/BRBR-32636F32/2022,DU.1 +England/QEUH-32624966/2022,DU.1 +England/LSPA-32620997/2022,DU.1 +England/LSPA-3261A2C2/2022,DU.1 +England/LSPA-326325CB/2022,DU.1 +England/PHEC-YY81WJQ/2022,DU.1 +England/QEUH-3261FF99/2022,DU.1 +England/LSPA-32609EE0/2022,DU.1 +England/LSPA-32633FF9/2022,DU.1 +England/LSPA-3261F9C8/2022,DU.1 +England/PHEC-YY8TYRQ/2022,DU.1 +England/LSPA-326227F5/2022,DU.1 +England/LSPA-32632D1E/2022,DU.1 +England/QEUH-3260FFBA/2022,DU.1 +England/LSPA-326331B7/2022,DU.1 +England/LSPA-32621A84/2022,DU.1 +England/LSPA-326216EA/2022,DU.1 +England/LSPA-326223E2/2022,DU.1 +England/LSPA-32621152/2022,DU.1 +England/LSPA-3263E92D/2022,DU.1 +England/LSPA-3261F773/2022,DU.1 +England/LSPA-32621C06/2022,DU.1 +England/BRBR-3263BB66/2022,DU.1 +England/PHEC-YY8USWU/2022,DU.1 +England/PHEC-YY8U3MD/2022,DU.1 +England/PHEC-YY8X3FA/2022,DU.1 +England/LSPA-326297C1/2022,DU.1 +England/PHEC-YY8ORIJ/2022,DU.1 +England/LSPA-326221F7/2022,DU.1 +England/LSPA-32634286/2022,DU.1 +England/PHEC-YY8UCFH/2022,DU.1 +England/BRBR-326367C1/2022,DU.1 +Wales/LSPA-3263F31F/2022,DU.1 +England/LSPA-32628847/2022,DU.1 +England/LSPA-32629406/2022,DU.1 +England/PHEC-YY8U3J8/2022,DU.1 +England/LSPA-32634040/2022,DU.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 820a8e86..6bbb090e 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -103,6 +103,7 @@ "DR": "B.1.1.529.5.3.1.1.1.1.1.1.3", "DS": "B.1.1.529.2.75.5.1.3.1", "DT": "B.1.1.529.5.3.1.1.1.1.1.1.32", + "DU": "B.1.1.529.5.3.1.1.1.1.1.1.2", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],