diff --git a/lineage_notes.txt b/lineage_notes.txt index 64e82994..679b4cbd 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -3367,6 +3367,7 @@ FY.4.2 Alias of XBB.1.22.1.4.2, ORF1a:Y2171F, ORF1b:V2287I, Kenya/USA/Japan, fro FY.5 Alias of XBB.1.22.1.5, S:478R, Indonesia, from #1965 FY.5.1 Alias of XBB.1.22.1.5.1, S:T572I, from sars-cov-2-variants/lineage-proposals#929 FY.5.1.1 Alias of XBB.1.22.1.5.1.1, S:M153I, S:F186S, S:S247N, from sars-cov-2-variants/lineage-proposals#790 +FY.5.2 Alias of XBB.1.22.1.5.2, S:L176F FY.6 Alias of XBB.1.22.1.6, ORF1a:A591V FY.6.1 Alias of XBB.1.22.1.6.1, S:S939F, Japan FY.6.2 Alias of XBB.1.22.1.6.2, ORF1a:A3143V, ins_S:216:SLQGN, Japan, from sars-cov-2-variants/lineage-proposals#637 diff --git a/lineages.csv b/lineages.csv index fe44716d..f22a3edb 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2421158,10 +2421158,6 @@ Singapore/R32MR52/2023,FY.5 Indonesia/JI-ITD-61169N/2023,FY.5 USA/CA-HLX-STM-U2MSZ6JKR/2023,FY.5 Japan/TKYnat13801/2023,FY.5 -SouthKorea/KDCA238667/2023,FY.5 -Indonesia/JI-ITD-61079NT/2023,FY.5 -Indonesia/JI-ITD-60931N/2023,FY.5 -Indonesia/JT-Labkes-WGS-23-074/2023,FY.5 Canada/BC-BCCDC-628459/2023,FY.5 Canada/BC-BCCDC-631372/2023,FY.5 USA/UT-UPHL-230518576454/2023,FY.5 @@ -2501437,3 +2501433,101 @@ Canada/ON-PHL-23-36598/2023,JD.1.1.6 USA/CO-CDC-QDX87529996/2023,JD.1.1.6 Canada/ON-PHL-23-36013/2023,JD.1.1.6 USA/CA-CDPH-6000017170/2023,JD.1.1.6 +Indonesia/JK-NIHRD-W03726/2023,FY.5.2 +Australia/SA540213/2023,FY.5.2 +Indonesia/JI-ITD-60931N/2023,FY.5.2 +Indonesia/JT-Labkes-WGS-23-074/2023,FY.5.2 +SouthKorea/KDCA238667/2023,FY.5.2 +USA/WA-GBW-H20-312-0085/2023,FY.5.2 +Australia/NSW-ICPMR-48018/2023,FY.5.2 +Australia/NSW-ICPMR-48497/2023,FY.5.2 +Australia/NSW-ICPMR-48493/2023,FY.5.2 +NewZealand/ESR-ZA3952/2023,FY.5.2 +NewZealand/ESR-YA3691/2023,FY.5.2 +Indonesia/JK-NIHRD-W03291/2023,FY.5.2 +USA/2323398/2023,FY.5.2 +Australia/NSW-ICPMR-48430/2023,FY.5.2 +SouthKorea/KDCA252592/2023,FY.5.2 +SouthKorea/KDCA251124/2023,FY.5.2 +Japan/PG-558865/2023,FY.5.2 +France/IDF-IPP17147/2023,FY.5.2 +Indonesia/JI-ITD-61566N/2023,FY.5.2 +Indonesia/JI-ITD-61548N/2023,FY.5.2 +CHN/GDCDC_GZHG_1175/2023,FY.5.2 +Indonesia/JK-NIHRD-W03727/2023,FY.5.2 +Indonesia/JK-NIHRD-W03401/2023,FY.5.2 +Indonesia/JI-ITD-61079NT/2023,FY.5.2 +Austria/AGES-1140660/2023,FY.5.2 +Austria/AGES-1140095/2023,FY.5.2 +USA/MI-MDHHS-SC44604/2023,FY.5.2 +Finland/THL-06185/2023,FY.5.2 +Belgium/Jessa_11-2326-000882ZOL/2023,FY.5.2 +England/PHEC-YYE54Y8/2023,FY.5.2 +USA/CA-CDPH-500126806/2023,FY.5.2 +Canada/AB-ABPHL-99965/2023,FY.5.2 +Canada/AB-ABPHL-100158/2023,FY.5.2 +Canada/AB-ABPHL-99968/2023,FY.5.2 +Canada/AB-ABPHL-100204/2023,FY.5.2 +Singapore/R41MR74/2023,FY.5.2 +Spain/AN-PMC-38280/2023,FY.5.2 +England/CLIMB-CM7YK5D6/2023,FY.5.2 +Spain/AN-PMC-37087/2023,FY.5.2 +Switzerland/VD-CHUV-GEN17585/2023,FY.5.2 +England/CLIMB-CM7Y8ISU/2023,FY.5.2 +USA/CA-HLX-STM-USR2YZAM3/2023,FY.5.2 +England/CLIMB-CM7YK48M/2023,FY.5.2 +USA/NY-CDC-LC1044219/2023,FY.5.2 +USA/FL-IVY-G43Q61T8/2023,FY.5.2 +Spain/CT-HUB08477/2023,FY.5.2 +Russia/SPE-RII-MH147002S/2023,FY.5.2 +Russia/SAM-RII-MH144419S/2023,FY.5.2 +USA/CO-CDPHE-41085815/2023,FY.5.2 +USA/AZ-CDC-QDX81685217/2023,FY.5.2 +Canada/NS-NSH-634873/2023,FY.5.2 +USA/IL-RIPHL_32256_G/2023,FY.5.2 +USA/DC-DFS-PHL-09809/2023,FY.5.2 +SouthKorea/KDCA259495/2023,FY.5.2 +SouthKorea/KDCA263890/2023,FY.5.2 +SouthKorea/KDCA261545/2023,FY.5.2 +SouthKorea/KDCA256468/2023,FY.5.2 +USA/MI-CDC-QDX86906423/2023,FY.5.2 +USA/NY-CDC-QDX83350694/2023,FY.5.2 +USA/PR-CVL-017806/2023,FY.5.2 +USA/NY-Wadsworth-23042501-01/2023,FY.5.2 +USA/TN-SPHL-16272/2023,FY.5.2 +USA/MN-HLX-VSX-A01766/2023,FY.5.2 +USA/TX-HMH-M-132853/2023,FY.5.2 +USA/FL-CDC-QDX83504012/2023,FY.5.2 +USA/KS-CDC-QDX83300924/2023,FY.5.2 +USA/2023CV2906/2023,FY.5.2 +USA/AZ-ASPHL-2906/2023,FY.5.2 +Canada/ON-PHL-23-28251/2023,FY.5.2 +France/GES-IPP16234/2023,FY.5.2 +USA/CA-HLX-STM-8E5XTKYBG/2023,FY.5.2 +Greece/NPHO-8027/2023,FY.5.2 +USA/CA-CDPH-6000016306/2023,FY.5.2 +Australia/WA14198/2023,FY.5.2 +Singapore/R52MR66/2023,FY.5.2 +Singapore/R50MR93/2023,FY.5.2 +Canada/BC-BCCDC-645043/2023,FY.5.2 +Canada/BC-BCCDC-645113/2023,FY.5.2 +Canada/BC-BCCDC-645127/2023,FY.5.2 +Canada/BC-BCCDC-645042/2023,FY.5.2 +Canada/BC-BCCDC-655154/2023,FY.5.2 +Australia/VIC-VIDRL-00011931/2023,FY.5.2 +Australia/VIC-VIDRL-00011875/2023,FY.5.2 +Australia/VIC-VIDRL-00011874/2023,FY.5.2 +Australia/VIC-VIDRL-00011877/2023,FY.5.2 +Australia/VIC-VIDRL-00011876/2023,FY.5.2 +Australia/SA596407/2023,FY.5.2 +Australia/SA596375/2023,FY.5.2 +Australia/VIC-VIDRL-00011904/2023,FY.5.2 +Australia/NSW-ICPMR-50358/2023,FY.5.2 +Australia/NSW-ICPMR-48806/2023,FY.5.2 +Australia/VIC-VIDRL-00011951/2023,FY.5.2 +Australia/VIC-VIDRL-00011942/2023,FY.5.2 +Australia/VIC-VIDRL-00011915/2023,FY.5.2 +Australia/VIC-VIDRL-00011956/2023,FY.5.2 +Australia/VIC-VIDRL-00011939/2023,FY.5.2 +Australia/VIC-VIDRL-00011948/2023,FY.5.2 +Australia/VIC-VIDRL-00011912/2023,FY.5.2