From a03b0dcdb987f87ded76cce6d953472fe7b0fa22 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Sat, 22 Apr 2023 18:24:23 +0200 Subject: [PATCH] Added lineage EG.1.4 (ORF1a:S2500F) with 400 designations --- lineage_notes.txt | 3 +- lineages.csv | 392 +++++++++++++++++++++++++++++++++++++++++++++- 2 files changed, 391 insertions(+), 4 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index ea47d67a..c309fe77 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2659,7 +2659,8 @@ XBB.1.9.2 S:F486P (after 27507C, 16878T), Indonesia/Singapore EG.1 Alias of XBB.1.9.2.1, S:Q613H on N:L219F branch, from #1664 and https://github.com/jmcbroome/auto-pango-designation/pull/193 EG.1.1 Alias of XBB.1.9.2.1.1, S:V70F and ORF1a:T403I, Luxembourg/Belgium/France EG.1.2 Alias of XBB.1.9.2.1.2, ORF7b:H42Y, mostly Austria -EG.1.3 Alias of XBB.1.9.2.1.3, C3784T, A6613G +EG.1.3 Alias of XBB.1.9.2.1.3, C3784T, A6613G, Europe +EG.1.4 Alias of XBB.1.9.2.1.4, ORF1a:S2500F, Europe EG.2 Alias of XBB.1.9.2.2, S:478R, Indonesia EG.3 Alias of XBB.1.9.2.3, ORF1a:L2778F on N:L219F branch XBB.1.9.3 ORF1b:G2005S, ORF1b:G1568C, Europe, from https://github.com/jmcbroome/auto-pango-designation/pull/193 diff --git a/lineages.csv b/lineages.csv index 9d9cc30b..06d800a0 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2204075,9 +2204075,6 @@ Australia/NSW-NSWHP-41890/2023,EG.1 Sweden/SUS0020628/2023,EG.1 Denmark/DCGC-638441/2023,EG.1 Denmark/DCGC-640971/2023,EG.1 -France/GES-IPP02517/2023,EG.1 -Austria/MUIV-1152/2023,EG.1 -Germany/BY-RKI-I-1103137/2023,EG.1 USA/CA-GBW-H10-010-6994/2023,EG.1 USA/CA-GBW-H20-270-8037/2023,EG.1 England/PHEC-YY87PXU/2023,EG.1 @@ -2367953,3 +2367950,392 @@ England/PLYM-327043B8/2023,EG.1.3 England/PLYM-3270D08B/2023,EG.1.3 England/PLYM-3270D7E0/2023,EG.1.3 England/PLYM-3270D05E/2023,EG.1.3 +Austria/AGES-1132972/2023,EG.1.4 +Netherlands/UT-RIVM-129137/2023,EG.1.4 +Switzerland/BE-IFIK-230313_os_07/2023,EG.1.4 +Switzerland/VD-CHUV-GEN16523/2023,EG.1.4 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