From 9f62cebb47d974092a1dffb113702c3be016e5e8 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Sun, 10 Sep 2023 15:56:03 +0200 Subject: [PATCH] Designate GJ.1.2.5 (XBB.2.3.3.1.2.5, S:I834V, Singapore/South Korea/USA) with 50 seqs --- lineage_notes.txt | 1 + lineages.csv | 62 +++++++++++++++++++++++++++++++++++++++-------- 2 files changed, 53 insertions(+), 10 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 04580ca3..f2b4a753 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -3209,6 +3209,7 @@ JE.1 Alias of XBB.2.3.3.1.2.1.1, S:478R, Singapore/SouthKorea/US From sars-cov-2 GJ.1.2.2 Alias of XBB.2.3.3.1.2.2, S:478R, Europe/US/Australia GJ.1.2.3 Alias of XBB.2.3.3.1.2.3, S:T76I, Japan GJ.1.2.4 Alias of XBB.2.3.3.1.2.4, S:S255F, on ORF1a:H919Y branch, Japan/USA/South Korea +GJ.1.2.5 Alias of XBB.2.3.3.1.2.5, S:I834V, Singapore/South Korea/USA GJ.2 Alias of XBB.2.3.3.2, S:I1114S, Europe GJ.3 Alias of XBB.2.3.3.3, ORF1a:P971S, ORF1b:V2371L GJ.4 Alias of XBB.2.3.3.4, S:M153Iļ¼Œfrom #1902 diff --git a/lineages.csv b/lineages.csv index f54efeab..c9117bdc 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2424089,8 +2424089,6 @@ Australia/SA541112/2023,GJ.1.2 NewZealand/23YA3001/2023,GJ.1.2 Fujian/FCDC-QZ05S020/2023,GJ.1.2 CHN/QZ202305S020/2023,GJ.1.2 -USA/CA-GBW-H20-277-3524/2023,GJ.1.2 -USA/CA-GBW-H10-012-6146/2023,GJ.1.2 Singapore/R41MR153/2023,GJ.1.2 Singapore/R41MR152/2023,GJ.1.2 USA/CA-GBW-H20-230-6556/2023,GJ.1.2 @@ -2454107,15 +2454105,7 @@ USA/NY-NYULH-15326/2023,GJ.1.2 Italy/VEN-IZSVe-23RS8155-2_VI/2023,GJ.1.2 Italy/VEN-IZSVe-23RS8161-2_TV/2023,GJ.1.2 Italy/VEN-IZSVe-23RS8161-3_TV/2023,GJ.1.2 -USA/CA-HLX-STM-JNQQAJ485/2023,GJ.1.2 -Singapore/R44MR126/2023,GJ.1.2 -Singapore/R42MR132/2023,GJ.1.2 -SouthKorea/KDCA253064/2023,GJ.1.2 -SouthKorea/KDCA249549/2023,GJ.1.2 -USA/CA-HLX-STM-CA3AMGYNG/2023,GJ.1.2 -USA/CA-HLX-STM-U7T3N4RYV/2023,GJ.1.2 USA/CA-HLX-STM-YHD43QCKJ/2023,GJ.1.2 -USA/CA-HLX-STM-EKU4JUPKU/2023,GJ.1.2 USA/FL-CDC-QDX81456345/2023,GJ.1.2 USA/FL-CDC-VSX-A348833/2023,GJ.1.2 USA/CA-SFDPH-X58312/2023,GJ.1.2 @@ -2463096,3 +2463086,55 @@ USA/CA-CDPH-500118785/2023,GJ.1.2.4 USA/CO-CDPHE-41124241/2023,GJ.1.2.4 USA/CO-CDPHE-41124238/2023,GJ.1.2.4 USA/CO-CDPHE-41163466/2023,GJ.1.2.4 +Singapore/R47MR47/2023,GJ.1.2.5 +Singapore/R44MR126/2023,GJ.1.2.5 +Singapore/R42MR132/2023,GJ.1.2.5 +SouthKorea/KDCA253064/2023,GJ.1.2.5 +SouthKorea/KDCA249549/2023,GJ.1.2.5 +USA/CA-GBW-H20-277-3524/2023,GJ.1.2.5 +USA/CA-GBW-H10-012-6146/2023,GJ.1.2.5 +USA/CA-Stanford-155_S35/2023,GJ.1.2.5 +USA/NY-URMC-N6S1I820-1/2023,GJ.1.2.5 +USA/NY-URMC-N6S1I649-1/2023,GJ.1.2.5 +England/CLIMB-CM7YGWZ6/2023,GJ.1.2.5 +England/CLIMB-CM7Y8HCQ/2023,GJ.1.2.5 +Israel/SMC-7114375/2023,GJ.1.2.5 +Wales/CLIMB-CM7YJTG3/2023,GJ.1.2.5 +USA/CA-HLX-STM-MQ6MS6U44/2023,GJ.1.2.5 +USA/CA-HLX-STM-CA3AMGYNG/2023,GJ.1.2.5 +USA/CA-HLX-STM-U7T3N4RYV/2023,GJ.1.2.5 +USA/CA-HLX-STM-Z97RKBUPG/2023,GJ.1.2.5 +USA/CA-HLX-STM-7ZCKCN4AK/2023,GJ.1.2.5 +USA/CA-HLX-STM-EKU4JUPKU/2023,GJ.1.2.5 +Thailand/NIC_KBI_7746/2023,GJ.1.2.5 +Thailand/NIC_KBI_7748/2023,GJ.1.2.5 +USA/CA-CDC-LC1054131/2023,GJ.1.2.5 +USA/CA-CDC-LC1054179/2023,GJ.1.2.5 +USA/CA-HLX-STM-RW8USKN3R/2023,GJ.1.2.5 +USA/CA-HLX-STM-UE78HZ429/2023,GJ.1.2.5 +USA/CA-HLX-STM-YB37CG7DK/2023,GJ.1.2.5 +USA/NY-CDC-LC1051092/2023,GJ.1.2.5 +USA/CA-CDC-VSX-A352193/2023,GJ.1.2.5 +USA/CA-HLX-STM-EZUEADD6J/2023,GJ.1.2.5 +USA/CA-HLX-STM-RTH4W3Q3J/2023,GJ.1.2.5 +USA/CA-HLX-STM-7MFTTHH4W/2023,GJ.1.2.5 +USA/NY-IVY-G43Q76W6/2023,GJ.1.2.5 +USA/WI-WSLH-2301359/2023,GJ.1.2.5 +USA/NY-CDC-QDX83027893/2023,GJ.1.2.5 +Canada/ON-PHL-23-29117/2023,GJ.1.2.5 +USA/NY-CDC-LC1050930/2023,GJ.1.2.5 +USA/NY-CDC-LC1050593/2023,GJ.1.2.5 +USA/NJ-CDC-QDX83399157/2023,GJ.1.2.5 +USA/NY-URMC-N6S1I823-1/2023,GJ.1.2.5 +USA/NY-URMC-N6S1I606-1/2023,GJ.1.2.5 +USA/DE-DHSS-B1300134/2023,GJ.1.2.5 +USA/NY-CDC-QDX83451183/2023,GJ.1.2.5 +USA/NY-PRL-230818_82D02/2023,GJ.1.2.5 +USA/NY-PRL-230818_84B01/2023,GJ.1.2.5 +USA/NY-PRL-230818_84B02/2023,GJ.1.2.5 +USA/NY-PRL-230825_81A01/2023,GJ.1.2.5 +USA/CA-HLX-STM-JNQQAJ485/2023,GJ.1.2.5 +USA/UT-UPHL-230905647251/2023,GJ.1.2.5 +USA/UT-UPHL-230828991603/2023,GJ.1.2.5 +USA/OSPHL08802/2023,GJ.1.2.5 +USA/OSPHL08725/2023,GJ.1.2.5