From 9e084183db3a025a240f59341931fefe883c09a5 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Fri, 1 Sep 2023 14:10:45 +0200 Subject: [PATCH] Designate XBB.1.5.104 (S:K304Q, USA) with 380 seqs --- lineage_notes.txt | 1 + lineages.csv | 388 +++++++++++++++++++++++++++++++++++++++++++++- 2 files changed, 381 insertions(+), 8 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 3167a361..c6f081b4 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2853,6 +2853,7 @@ JD.1 Alias of XBB.1.5.102.1, S:L455F, S:F456L (T22928C), A14634G, T28282C, Brazi JD.1.1 Alias of XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain JD.1.2 Alias of XBB.1.5.102.1.2, S:P1162S, Brazil XBB.1.5.103 S:F456L (T22928C), S:180/184del, S:N185D, ORF1a:T1437I, ORF7b:C41W, T21357C, Argentina +XBB.1.5.104 S:K304Q, USA XBB.1.6 USA, S:L216F, S:H146K, from issue #1428 XBB.1.7 USA-NY, S:V608I XBB.1.8 Denmark, S:186insSGG, C3241T From #1455 diff --git a/lineages.csv b/lineages.csv index 2aee40e0..fbb9378e 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2244929,7 +2244929,6 @@ USA/NY-ASC-210960848/2022,XBB.1.5 USA/NJ-CDC-QDX46275898/2023,XBB.1.5 USA/NC-CORVASEQ-1085-8800/2023,XBB.1.5 USA/NY-CDC-VSX-A078136/2023,XBB.1.5 -USA/MI-UM-7852780/2023,XBB.1.5 USA/NC-CDC-VSX-A078117/2023,XBB.1.5 Canada/ON-PHL-15139/2023,XBB.1.5 USA/CA-CDC-LC1021843/2023,XBB.1.5 @@ -2247070,7 +2247069,6 @@ USA/PA-CDC-QDX45530400/2023,XBB.1.5 USA/CT-YNH-2779/2023,XBB.1.5 Germany/RP-RKI-I-1111377/2023,XBB.1.5 USA/CA-CDC-VSX-A062071/2023,XBB.1.5 -USA/MI-CDC-LC1022812/2023,XBB.1.5 USA/CA-CDC-LC1010221/2023,XBB.1.5 USA/CT-IVY-G43Q08B9/2023,XBB.1.5 England/PHEP-YYGM7CX/2023,XBB.1.5 @@ -2247605,7 +2247603,6 @@ USA/NY-CDC-QDX45864124/2023,XBB.1.5 England/BRBR-326E561F/2023,XBB.1.5 Austria/AGES-1119225/2023,XBB.1.5 USA/TX-HMH-MCoV-124186/2023,XBB.1.5 -USA/CA-CDC-QDX46500606/2023,XBB.1.5 USA/GA-CDC-QDX47090931/2023,XBB.1.5 Israel/ICH-741194780/2022,XBB.1.5 USA/MA-CDC-VSX-A072695/2023,XBB.1.5 @@ -2248193,7 +2248190,6 @@ Israel/ICH-741196479/2023,XBB.1.5 Switzerland/ZG-ICH-2230231129/2023,XBB.1.5 USA/NY-PRL-221214_00I07/2022,XBB.1.5 USA/NY-CDC-LC1019902/2023,XBB.1.5 -USA/MI-CDC-LC1005597/2023,XBB.1.5 USA/IN-CDC-STM-NFS2AQ2BE/2023,XBB.1.5 USA/NY-IVY-G43Q12L4/2023,XBB.1.5 Belgium/Jessa_11-2309-004687/2023,XBB.1.5 @@ -2248334,7 +2248330,6 @@ USA/VA-CDC-LC0993718/2023,XBB.1.5 USA/MD-CDC-QDX46775513/2023,XBB.1.5 USA/NJ-CDC-LC0985061/2023,XBB.1.5 USA/MA-CDCBI-CRSP_GBURRVHD3MCUORUL/2023,XBB.1.5 -USA/MI-CDC-LC1008471/2023,XBB.1.5 USA/NJ-ASC-210995708/2023,XBB.1.5 USA/OH-PLMI-HCWWM-17674/2023,XBB.1.5 Spain/CT-HUVH-E00750/2023,XBB.1.5 @@ -2248911,7 +2248906,6 @@ USA/RI-CDC-LC0986241/2023,XBB.1.5 USA/FL-CDC-QDX47312409/2023,XBB.1.5 USA/IL-CDC-VSX-A064061/2023,XBB.1.5 Germany/BW-RKI-I-1103157/2023,XBB.1.5 -USA/MI-CDC-QDX46612498/2023,XBB.1.5 Spain/CT-HUB07727/2023,XBB.1.5 USA/NJ-PHEL-V23004557/2023,XBB.1.5 Canada/ON-KHS-23-00370-v1/2023,XBB.1.5 @@ -2251363,7 +2251357,6 @@ USA/VA-CDC-LC1003979/2023,XBB.1.5 USA/NY-CDC-QDX46010356/2023,XBB.1.5 Canada/ON-PHL-23-14866/2023,XBB.1.5 USA/NC-CORVASEQ-UNC-8738/2022,XBB.1.5 -USA/GA-CDC-QDX46944378/2023,XBB.1.5 USA/CA-CDC-QDX47042699/2023,XBB.1.5 USA/NV-CDC-QDX46725326/2023,XBB.1.5 USA/CO-CDPHE-2103785464/2023,XBB.1.5 @@ -2252175,7 +2252168,6 @@ USA/PA-BOL-M23015129/2023,XBB.1.5 USA/PA-CDC-QDX46944732/2023,XBB.1.5 USA/NC-CORVASEQ-1085-9070/2023,XBB.1.5 USA/NY-CDC-LC0991236/2023,XBB.1.5 -USA/TX-HMH-MCoV-125735/2023,XBB.1.5 England/PHEP-YYGK8WS/2023,XBB.1.5 USA/NY-PRL-02_81F01/2023,XBB.1.5 USA/VA-CDC-LC1006814/2023,XBB.1.5 @@ -2461444,3 +2461436,383 @@ USA/CA-CDC-VSX-A349165/2023,HF.1.2 USA/NY-NYULH-15347/2023,HF.1.2 USA/NY-PBRI-NYC23A016/2023,HF.1.2 USA/NY-PBRI-NYC23A005/2023,HF.1.2 +USA/MI-UM-10049976020/2023,XBB.1.5.104 +USA/MI-UM-L363459653/2023,XBB.1.5.104 +USA/MI-UM-L364408162/2023,XBB.1.5.104 +USA/MI-UM-L362559750/2023,XBB.1.5.104 +USA/MI-UM-MH28962/2023,XBB.1.5.104 +USA/MI-UM-L362460510/2023,XBB.1.5.104 +USA/MI-UM-L363412952/2023,XBB.1.5.104 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