From 932c46a07321daab277a6f8f401ed0e4fb77186d Mon Sep 17 00:00:00 2001
From: Cornelius Roemer <cornelius.roemer@gmail.com>
Date: Thu, 21 Dec 2023 18:31:08 +0100
Subject: [PATCH] Designate JW.1.1 (XBB.1.41.3.1.1, S:Q14K, South Africa)

---
 lineage_notes.txt |  1 +
 lineages.csv      | 44 ++++++++++++++++++++++----------------------
 2 files changed, 23 insertions(+), 22 deletions(-)

diff --git a/lineage_notes.txt b/lineage_notes.txt
index 39763d7e..11696142 100644
--- a/lineage_notes.txt
+++ b/lineage_notes.txt
@@ -3482,6 +3482,7 @@ JC.6	Alias of XBB.1.41.1.6, S:I1227V, South Africa
 XBB.1.41.2	S:S494P, USA, from sars-cov-2-variants/lineage-proposals#389
 XBB.1.41.3	C17850T, C25276T, C29416G, Africa
 JW.1	Alias of XBB.1.41.3.1, S:K478R, ORF1a:L397F, South Africa/DRC
+JW.1.1	Alias of XBB.1.41.3.1.1, S:Q14K, South Africa
 XBB.1.42	S:486P, S:Q613H, on ORF1a:T4175I branch with XBB.1.9, Indonesia/Malaysia/China, from #1954
 XBB.1.42.1	S:478R, from sars-cov-2-variants/lineage-proposals#198
 XBB.1.42.2	C6040T, G9049A
diff --git a/lineages.csv b/lineages.csv
index 124369b3..cf697566 100644
--- a/lineages.csv
+++ b/lineages.csv
@@ -2472302,14 +2472302,6 @@ CHN/SH-HG20230424-331/2023,JW.1
 Shanghai/SCDC-HG0424-331/2023,JW.1
 USA/CA-HLX-STM-PTAHJ4G3M/2023,JW.1
 USA/CA-LACPHL-AY01898/2023,JW.1
-SouthAfrica/NICD-R09971/2023,JW.1
-SouthAfrica/NICD-R10158/2023,JW.1
-SouthAfrica/NICD-R09142/2023,JW.1
-SouthAfrica/NICD-N56126/2023,JW.1
-SouthAfrica/NICD-N56155/2023,JW.1
-NewZealand/23ZA4407/2023,JW.1
-SouthAfrica/NICD-R10074/2023,JW.1
-SouthAfrica/NICD-N56192/2023,JW.1
 Greece/NPHO-7207/2023,FL.30.1
 Greece/NPHO-7208/2023,FL.30.1
 Greece/PEDY-4012/2023,FL.30.1
@@ -2510512,17 +2510504,25 @@ Mauritius/CHL_53137/2023,JW.1
 Mauritius/CHL_53129/2023,JW.1
 Mauritius/CHL_53282/2023,JW.1
 Mauritius/CHL_53315/2023,JW.1
-SouthAfrica/NICD-GP-0547/2023,JW.1
-SouthAfrica/NICD-GP-0435/2023,JW.1
-SouthAfrica/NICD-GP-0338/2023,JW.1
-England/CLIMB-CM7YRI7Y/2023,JW.1
-SouthAfrica/NICD-R12083/2023,JW.1
-SouthAfrica/CERI-KRISP-K059295_COVID477/2023,JW.1
-SouthAfrica/CERI-KRISP-K059282_COVID477/2023,JW.1
-SouthAfrica/NICD-N56615/2023,JW.1
-SouthAfrica/CERI-KRISP-K059633/2023,JW.1
-SouthAfrica/NICD-N56588/2023,JW.1
-USA/CA-CDC-LC1067050/2023,JW.1
-SouthAfrica/NICD-N56645/2023,JW.1
-SouthAfrica/NICD-R12050/2023,JW.1
-France/IDF-IPP25420/2023,JW.1
+SouthAfrica/NICD-GP-0547/2023,JW.1.1
+NewZealand/23ZA4407/2023,JW.1.1
+SouthAfrica/NICD-GP-0435/2023,JW.1.1
+SouthAfrica/NICD-GP-0338/2023,JW.1.1
+England/CLIMB-CM7YRI7Y/2023,JW.1.1
+SouthAfrica/NICD-R12083/2023,JW.1.1
+SouthAfrica/NICD-R09142/2023,JW.1.1
+SouthAfrica/NICD-N56126/2023,JW.1.1
+SouthAfrica/CERI-KRISP-K059295_COVID477/2023,JW.1.1
+SouthAfrica/CERI-KRISP-K059282_COVID477/2023,JW.1.1
+SouthAfrica/NICD-N56615/2023,JW.1.1
+SouthAfrica/NICD-R09971/2023,JW.1.1
+SouthAfrica/CERI-KRISP-K059633/2023,JW.1.1
+SouthAfrica/NICD-N56155/2023,JW.1.1
+SouthAfrica/NICD-N56588/2023,JW.1.1
+USA/CA-CDC-LC1067050/2023,JW.1.1
+SouthAfrica/NICD-R10074/2023,JW.1.1
+SouthAfrica/NICD-N56192/2023,JW.1.1
+SouthAfrica/NICD-R10158/2023,JW.1.1
+SouthAfrica/NICD-N56645/2023,JW.1.1
+SouthAfrica/NICD-R12050/2023,JW.1.1
+France/IDF-IPP25420/2023,JW.1.1