From 922795c90de355e67200cf4d379e8e5ff22472e4 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Tue, 28 May 2024 01:42:05 +0200 Subject: [PATCH] Designate LK.1 (JN.1.7.5.1, S:445P, ORF1a:R1170C, USA/Canada) --- lineage_notes.txt | 1 + lineages.csv | 46 ++++++++++++++++---------------- pango_designation/alias_key.json | 1 + 3 files changed, 25 insertions(+), 23 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 008e873b..06cf734e 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1091,6 +1091,7 @@ JN.1.7.2 Alias of B.1.1.529.2.86.1.1.7.2, ORF1b:C1563F, Americas JN.1.7.3 Alias of B.1.1.529.2.86.1.1.7.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1343 JN.1.7.4 Alias of B.1.1.529.2.86.1.1.7.4, S:F456L (T22928C) JN.1.7.5 Alias of B.1.1.529.2.86.1.1.7.5, ORF1a:H3395Y +LK.1 Alias of B.1.1.529.2.86.1.1.7.5, S:445P, ORF1a:R1170C, USA/Canada JN.1.8 Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I JN.1.8.1 Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, after A12928G, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097 JN.1.8.2 Alias of B.1.1.529.2.86.1.1.8.2, S:R346T, after A12928G, from sars-cov-2-variants/lineage-proposals#1089 diff --git a/lineages.csv b/lineages.csv index 92e08921..650d865d 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2550567,26 +2550567,26 @@ Canada/NS-NSH-699059/2024,JN.1.52 Canada/NS-NSH-699034/2024,JN.1.52 Canada/NS-NSH-700623/2024,JN.1.52 Canada/NS-NSH-699070/2024,JN.1.52 -USA/NY-CDC-QDX92861262/2024,JN.1.7.5 -Canada/NL-NML-705294/2024,JN.1.7.5 -Canada/NL-NML-705254/2024,JN.1.7.5 -USA/TX-HMH-M-138836/2024,JN.1.7.5 -Canada/NL-NML-705248/2024,JN.1.7.5 -USA/PR-CVL-023312/2024,JN.1.7.5 -USA/TX-HMH-MCoV-140803/2024,JN.1.7.5 -USA/TX-HMH-MCoV-140267/2024,JN.1.7.5 -USA/NY-URMC-O4S1N399-1/2024,JN.1.7.5 -USA/TX-HMH-M-139883/2024,JN.1.7.5 -Canada/NS-NSH-710087/2024,JN.1.7.5 -USA/TX-HMH-MCoV-140319/2024,JN.1.7.5 -USA/TX-HMH-MCoV-140255/2024,JN.1.7.5 -Canada/NL-NML-708324/2024,JN.1.7.5 -Canada/NL-NML-706218/2024,JN.1.7.5 -Canada/NL-NML-706226/2024,JN.1.7.5 -Canada/NL-NML-711421/2024,JN.1.7.5 -Canada/NL-NML-711423/2024,JN.1.7.5 -Canada/NL-NML-707672/2024,JN.1.7.5 -Canada/NL-NML-706216/2024,JN.1.7.5 -Canada/NL-NML-709166/2024,JN.1.7.5 -Canada/NL-NML-708319/2024,JN.1.7.5 -Canada/NL-NML-708322/2024,JN.1.7.5 +USA/NY-CDC-QDX92861262/2024,LK.1 +Canada/NL-NML-705294/2024,LK.1 +Canada/NL-NML-705254/2024,LK.1 +USA/TX-HMH-M-138836/2024,LK.1 +Canada/NL-NML-705248/2024,LK.1 +USA/PR-CVL-023312/2024,LK.1 +USA/TX-HMH-MCoV-140803/2024,LK.1 +USA/TX-HMH-MCoV-140267/2024,LK.1 +USA/NY-URMC-O4S1N399-1/2024,LK.1 +USA/TX-HMH-M-139883/2024,LK.1 +Canada/NS-NSH-710087/2024,LK.1 +USA/TX-HMH-MCoV-140319/2024,LK.1 +USA/TX-HMH-MCoV-140255/2024,LK.1 +Canada/NL-NML-708324/2024,LK.1 +Canada/NL-NML-706218/2024,LK.1 +Canada/NL-NML-706226/2024,LK.1 +Canada/NL-NML-711421/2024,LK.1 +Canada/NL-NML-711423/2024,LK.1 +Canada/NL-NML-707672/2024,LK.1 +Canada/NL-NML-706216/2024,LK.1 +Canada/NL-NML-709166/2024,LK.1 +Canada/NL-NML-708319/2024,LK.1 +Canada/NL-NML-708322/2024,LK.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 5b06f55c..ffcf1571 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -255,6 +255,7 @@ "LG": "B.1.1.529.2.86.1.1.28.1.1.1.1", "LH": "B.1.1.529.2.86.1.1.18.4", "LJ": "B.1.1.529.2.86.1.1.51.1", + "LK": "B.1.1.529.2.86.1.1.7.5", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],