From 90d48d5b9ce3ff81bbb7efcd83b3a3903a7ca001 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Sun, 23 Jul 2023 15:44:11 +0200 Subject: [PATCH] Designate EG.5.1.3 (XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T) with 120 seqs --- lineage_notes.txt | 1 + lineages.csv | 130 +++++++++++++++++++++++++++++++++++++++++++++- 2 files changed, 129 insertions(+), 2 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index f9e093fb..c51d1658 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2897,6 +2897,7 @@ EG.5 Alias of XBB.1.9.2.5, S:F456L (T22930A), ORF1a:A690V, ORF1a:A3143V, Indones EG.5.1 Alias of XBB.1.9.2.5.1, S:Q52H EG.5.1.1 Alias of XBB.1.9.2.5.1.1, China, from pango-designation issue #2020 EG.5.1.2 Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I +EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T EG.5.2 Alias of XBB.1.9.2.5.2, N:L161F EG.6 Alias of XBB.1.9.2.6, C1684T, Israel EG.6.1 Alias of XBB.1.9.2.6.1, S:456L (T22928C), Israel/Japan/Canada From #1950 diff --git a/lineages.csv b/lineages.csv index abbc13a1..7b408289 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2386981,8 +2386981,6 @@ Germany/RP-RKI-I-1134367/2023,EG.5.1 USA/CA-LACPHL-AF21035/2023,EG.5.1 Switzerland/BE-IFIK-230411_os_01/2023,EG.5.1 USA/CA-HLX-STM-HU57RGBVA/2023,EG.5.1 -USA/AZ00179292/2023,EG.5.1 -USA/AZ-ASPHL-1164/2023,EG.5.1 Japan/TKYnat13243/2023,EG.5.1 Japan/TKYmbc36927/2023,EG.5.1 Japan/PG-469748/2023,EG.5.1 @@ -2447415,3 +2447413,131 @@ Japan/PG-528632/2023,EG.5.1.2 Japan/TKYmbc37866/2023,EG.5.1.2 Japan/PG-529348/2023,EG.5.1.2 Japan/PG-528375/2023,EG.5.1.2 +USA/WA-GBW-H20-324-4637/2023,EG.5.1.3 +Germany/NW-RKI-I-1136946/2023,EG.5.1.3 +Spain/CT-HUB08486/2023,EG.5.1.3 +USA/WI-CDC-VSX-A348563/2023,EG.5.1.3 +Spain/CT-HUGTiP-C3R145/2023,EG.5.1.3 +Spain/CT-HUGTiP-H2R145/2023,EG.5.1.3 +Wales/CLIMB-CM7YKRW1/2023,EG.5.1.3 +USA/CA-CDPH-500115993/2023,EG.5.1.3 +Spain/IB-HUSE-08390/2023,EG.5.1.3 +Germany/BY-RKI-I-1136963/2023,EG.5.1.3 +Austria/AGES-1140650/2023,EG.5.1.3 +Netherlands/NB-PAMM-F28-0516/2023,EG.5.1.3 +Spain/AS-232340180/2023,EG.5.1.3 +Spain/MD-HGUGM-7570138/2023,EG.5.1.3 +USA/PA-CDC-QDX81183394/2023,EG.5.1.3 +Singapore/R40MR116/2023,EG.5.1.3 +USA/CA-LACPHL-AF22591/2023,EG.5.1.3 +USA/NC-CDC-LC1043120/2023,EG.5.1.3 +USA/NY-NYULH-15007/2023,EG.5.1.3 +Canada/AB-ABPHL-97919/2023,EG.5.1.3 +Austria/AGES-1140584/2023,EG.5.1.3 +USA/AZ00179292/2023,EG.5.1.3 +USA/IL-CDC-QDX80078318/2023,EG.5.1.3 +USA/CA-HLX-STM-8UVVWV6Q3/2023,EG.5.1.3 +USA/CA-HLX-STM-4QDX4SRP8/2023,EG.5.1.3 +USA/MD-HP47409-PIDHTUGEOC/2023,EG.5.1.3 +USA/MN-MDH-35545/2023,EG.5.1.3 +USA/AZ-ADHS-9292/2023,EG.5.1.3 +France/BRE-IPP15906/2023,EG.5.1.3 +Spain/CT-HUB08471/2023,EG.5.1.3 +Spain/CT-HUGTiP-A2R144/2023,EG.5.1.3 +Austria/AGES-1140516/2023,EG.5.1.3 +Germany/BY-RKI-I-1136940/2023,EG.5.1.3 +USA/SC-CDC-VSX-A349249/2023,EG.5.1.3 +Italy/UMB-LAOP-124-2-05/2023,EG.5.1.3 +Finland/THL-06238/2023,EG.5.1.3 +Germany/NW-RKI-I-1136949/2023,EG.5.1.3 +Scotland/CLIMB-CM7YKHGX/2023,EG.5.1.3 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