From 90a2ec2345d3b6b9f4387219b18cb914a8072a3c Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Sat, 22 Apr 2023 18:48:48 +0200 Subject: [PATCH] Added lineage FL.4 (XBB.1.9.1 with ORF1b:V1092F) with 400 designations --- lineage_notes.txt | 1 + lineages.csv | 337 ++++++++++++++++++++++++++++++++++++++++++++-- 2 files changed, 326 insertions(+), 12 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index be301a1d..d0dc6265 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2656,6 +2656,7 @@ XBB.1.9.1 S:F486P (after C11956T), Indonesia/Singapore/Malaysia/England FL.1 Alias of XBB.1.9.1.1, S:701V, ORF1a:G993S FL.2 Alias of XBB.1.9.1.2, T4579A FL.3 Alias of XBB.1.9.1.3, T1753C, England +FL.4 Alias of XBB.1.9.1.4, ORF1b:V1092F XBB.1.9.2 S:F486P (after 27507C, 16878T), Indonesia/Singapore EG.1 Alias of XBB.1.9.2.1, S:Q613H on N:L219F branch, from #1664 and https://github.com/jmcbroome/auto-pango-designation/pull/193 EG.1.1 Alias of XBB.1.9.2.1.1, S:V70F and ORF1a:T403I, Luxembourg/Belgium/France diff --git a/lineages.csv b/lineages.csv index e770132c..5d26b0ef 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2142034,24 +2142034,12 @@ PAK/VI0386-S4/2023,XBB.1.9.1 Austria/LB-R00122-S034/2023,XBB.1.9.1 Austria/LB-R00122-S207/2023,XBB.1.9.1 Austria/LB-R00121-S199/2023,XBB.1.9.1 -France/GES-IPP01723/2023,XBB.1.9.1 -France/GES-IPP01722/2023,XBB.1.9.1 -Germany/BW-RKI-I-1093217/2023,XBB.1.9.1 -USA/NY-CDC-QDX45343025/2023,XBB.1.9.1 -USA/CA-CDC-STM-95TKR9YFM/2023,XBB.1.9.1 -India/TG-CDFD-MMG-529/2023,XBB.1.9.1 -India/TG-CDFD-MMG-527/2023,XBB.1.9.1 -Canada/ON-PHL-23-07021/2023,XBB.1.9.1 -Canada/ON-PHL-23-07138/2023,XBB.1.9.1 -Canada/ON-PHL-23-07130/2023,XBB.1.9.1 England/PHEC-YY89ZD7/2023,XBB.1.9.1 England/QEUH-326A14CA/2023,XBB.1.9.1 Australia/WA10822/2023,XBB.1.9.1 Bangladesh/ideSHi-IR-3444/2023,XBB.1.9.1 USA/NE-NPHL23-315/2023,XBB.1.9.1 USA/NE-NPHL23-322/2023,XBB.1.9.1 -USA/CT-CDC-LC0996027/2023,XBB.1.9.1 -USA/MA-CDCBI-CRSP_G32XQISZ4EAQRNYH/2023,XBB.1.9.1 India/GJ-GBRC10171/2023,XBB.1.9.1 India/GJ-GBRC10170/2023,XBB.1.9.1 England/PHEC-YY873TN/2023,XBB.1.9.1 @@ -2369632,3 +2369620,328 @@ England/BRBR-327039D5/2023,FL.3 England/BRBR-32712B37/2023,FL.3 England/PHEC-YYEUKEZ/2023,FL.3 England/PHEC-YYEUJ3I/2023,FL.3 +Germany/BW-RKI-I-1104999/2023,FL.4 +Germany/BY-RKI-I-1125348/2023,FL.4 +Switzerland/VD-CHUV-GEN16459/2023,FL.4 +Germany/NW-RKI-I-1125924/2023,FL.4 +Singapore/R21MR224/2023,FL.4 +Germany/BW-RKI-I-1127205/2023,FL.4 +Israel/ICH-741196898/2023,FL.4 +SouthKorea/KDCA223132/2023,FL.4 +Australia/WA12445/2023,FL.4 +Germany/SN-RKI-I-1129163/2023,FL.4 +England/PHEC-YYETSAQ/2023,FL.4 +Malaysia/IMR_CV05451/2023,FL.4 +Australia/NSW-ICPMR-44400/2023,FL.4 +Denmark/DCGC-645456/2023,FL.4 +Germany/RP-RKI-I-1130224/2023,FL.4 +Germany/NW-RKI-I-1130802/2023,FL.4 +Germany/BW-RKI-I-1131021/2023,FL.4 +Austria/AGES-1133007/2023,FL.4 +Indonesia/JI-ITD-60891N/2023,FL.4 +France/BFC-IPP09592/2023,FL.4 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