From 8561bd47dcaee279aab1bd6e49fd52a52256fec4 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Wed, 3 May 2023 10:40:32 +0200 Subject: [PATCH] Add lineage FD.3 (XBB.1.5.15 with S:A348S) with 80 designations --- lineage_notes.txt | 1 + lineages.csv | 86 ++++++++++++++++++++++++++++++++++++++++------- 2 files changed, 75 insertions(+), 12 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 215a02fb..ca6a6a06 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2624,6 +2624,7 @@ XBB.1.5.15 G15957T, USA FD.1 Alias of XBB.1.5.15.1, ORF7b:E3*, England/Canada FD.1.1 Alias of XBB.1.5.15.1.1, S:F456L, Canada-QC FD.2 Alias of XBB.1.5.15.2, S:Q146K, ORF1a:G519S, USA, from #1600 +FD.3 Alias of XBB.1.5.15.3, S:A348S, T8503C, USA/Finland/Japan XBB.1.5.16 T14766C, USA FG.1 Alias of XBB.1.5.16.1, S:T284I, S:R403K, S:L513F, USA, from #1751 FG.2 Alias of XBB.1.5.16.2, S:D178N, USA/Europe diff --git a/lineages.csv b/lineages.csv index c12fe0e3..035788c8 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2225625,18 +2225625,6 @@ USA/CA-CDC-QDX45961757/2023,XBB.1.5.15 USA/CA-CDC-QDX45690352/2023,XBB.1.5.15 USA/NJ-CDC-QDX46552036/2023,XBB.1.5.15 USA/NY-CDC-LC0997362/2023,XBB.1.5.15 -Canada/QC-L00574396001/2023,XBB.1.5.15 -Finland/THL-01341/2023,XBB.1.5.15 -USA/CA-CDPH-FS48080169/2023,XBB.1.5.15 -Finland/THL-01778/2023,XBB.1.5.15 -USA/NY-CDC-LC0979954/2023,XBB.1.5.15 -Finland/THL-02502/2023,XBB.1.5.15 -USA/NJ-PHEL-V23003420/2023,XBB.1.5.15 -USA/NJ-CDC-LC0979744/2023,XBB.1.5.15 -USA/CA-CDC-QDX46552192/2023,XBB.1.5.15 -USA/MD-CDC-QDX46500263/2023,XBB.1.5.15 -USA/NY-CDC-LC0997325/2023,XBB.1.5.15 -USA/CT-Yale-24108/2023,XBB.1.5.15 USA/CT-YSPH-24108/2023,XBB.1.5.15 USA/CA-NSYMMPHL-NSYM6205/2023,XBB.1.5.15 USA/CA-NSYMMPHL-NSYM6204/2023,XBB.1.5.15 @@ -2380759,3 +2380747,77 @@ France/ARA-HCL023066247801/2023,CH.1.1.20 Scotland/SCOT-30159/2023,CH.1.1.20 Scotland/SCOT-30156/2023,CH.1.1.20 England/PHEC-YYEW3Q4/2023,CH.1.1.20 +USA/NJ-PHEL-V23003420/2023,FD.3 +Finland/THL-02502/2023,FD.3 +Finland/THL-01996/2023,FD.3 +Japan/PG-453430/2023,FD.3 +Finland/THL-02822/2023,FD.3 +Taiwan/CDC-F78662/2023,FD.3 +USA/NY-CDC-LC0979954/2023,FD.3 +Finland/THL-03421/2023,FD.3 +Finland/THL-02928/2023,FD.3 +Finland/THL-02862/2023,FD.3 +Finland/THL-01778/2023,FD.3 +USA/CA-CDPH-FS48080169/2023,FD.3 +Finland/THL-01341/2023,FD.3 +USA/NJ-CDC-LC0979744/2023,FD.3 +Canada/QC-L00574396001/2023,FD.3 +Finland/THL-02670/2023,FD.3 +Finland/THL-02671/2023,FD.3 +Finland/THL-03059/2023,FD.3 +Finland/THL-04107/2023,FD.3 +Finland/THL-03798/2023,FD.3 +Finland/THL-03748/2023,FD.3 +USA/CA-HLX-STM-B5967BMQW/2023,FD.3 +USA/NY-CDC-LC0997325/2023,FD.3 +USA/CT-Yale-24108/2023,FD.3 +USA/CA-CDC-LC1021538/2023,FD.3 +USA/CA-CDC-LC1016599/2023,FD.3 +USA/CA-CDC-QDX47361795/2023,FD.3 +USA/CA-CDC-VSX-A079134/2023,FD.3 +Finland/THL-02882/2023,FD.3 +Finland/THL-02758/2023,FD.3 +Finland/THL-03554/2023,FD.3 +Finland/THL-03353/2023,FD.3 +Finland/THL-03558/2023,FD.3 +Finland/THL-03338/2023,FD.3 +Finland/THL-03556/2023,FD.3 +Finland/THL-03595/2023,FD.3 +Canada/BC-BCCDC-616606/2023,FD.3 +Canada/BC-BCCDC-613651/2023,FD.3 +Canada/BC-BCCDC-618691/2023,FD.3 +Canada/BC-BCCDC-613356/2023,FD.3 +Japan/PG-468304/2023,FD.3 +Japan/PG-471118/2023,FD.3 +Japan/PG-471119/2023,FD.3 +Japan/PG-470942/2023,FD.3 +Japan/PG-468689/2023,FD.3 +Japan/FCIHE-PG-469375/2023,FD.3 +Japan/PG-471120/2023,FD.3 +Japan/PG-468317/2023,FD.3 +USA/CA-SLOPH-C1954/2023,FD.3 +USA/CA-HLX-STM-Q3X2YK2QF/2023,FD.3 +USA/FL-CDC-QDX46678397/2023,FD.3 +USA/CA-CDC-LC1017688/2023,FD.3 +USA/CA-HLX-STM-KC8DCWPBC/2023,FD.3 +USA/CO-CDPHE-2103794795/2023,FD.3 +USA/NV-NSPHL-23-S002812/2023,FD.3 +USA/CA-LACPHL-AF20371/2023,FD.3 +USA/CA-CDC-QDX46724919/2023,FD.3 +USA/CA-HLX-STM-N34Z5FHG7/2023,FD.3 +USA/CA-HLX-STM-QRTVT2DQ7/2023,FD.3 +USA/HI-H2320900/2023,FD.3 +USA/HI-20900/2023,FD.3 +USA/CA-HLX-STM-ZJFPY9FB8/2023,FD.3 +USA/CA-CDC-LC1022103/2023,FD.3 +USA/CA-HLX-STM-J2XEKKD3W/2023,FD.3 +USA/CA-CDC-LC1022104/2023,FD.3 +USA/NV-CDC-QDX47696646/2023,FD.3 +USA/CA-CDPH-500108308/2023,FD.3 +USA/TX-HMH-M-126402/2023,FD.3 +USA/NV-CDC-QDX47043207/2023,FD.3 +USA/CA-CDC-QDX46552192/2023,FD.3 +USA/NY-GBW-H10-011-6085/2023,FD.3 +USA/NY-GBW-H20-284-9665/2023,FD.3 +USA/CA-CDC-QDX47542293/2023,FD.3 +USA/MD-CDC-QDX46500263/2023,FD.3