From 7cb5b6be76238f51f5c5050521dcdf243c3c861c Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Tue, 4 Jun 2024 15:47:31 +0200 Subject: [PATCH] Designate LR.1 (JN.1.58.2, S:F456L (22928C)) and LR.2 (S:F456V) --- lineage_notes.txt | 2 ++ lineages.csv | 26 +++++++++++++------------- pango_designation/alias_key.json | 1 + 3 files changed, 16 insertions(+), 13 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 88b0bdff..e5a8659a 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1282,6 +1282,8 @@ JN.1.57.1 Alias of B.1.1.529.2.86.1.1.57.1, S:S60P, Taiwan/South Korea JN.1.58 Alias of B.1.1.529.2.86.1.1.58, ORF1b:K2557R JN.1.58.1 Alias of B.1.1.529.2.86.1.1.58, S:S60P JN.1.58.2 Alias of B.1.1.529.2.86.1.1.58, S:R346T +LR.1 Alias of B.1.1.529.2.86.1.1.58.1, S:F456L (22928C) +LR.2 Alias of B.1.1.529.2.86.1.1.58.2, S:F456V JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284 JN.2.1 Alias of B.1.1.529.2.86.1.2.1, S:S31F, Sweden/Australia JN.2.2 Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433 diff --git a/lineages.csv b/lineages.csv index c73f4be8..7a8a1f6e 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2555556,16 +2555556,16 @@ Kenya/DAD-01952/2024,JN.1.58.2 Kenya/DAD-01934/2024,JN.1.58.2 NewZealand/24ZA1413/2024,JN.1.58.2 NewZealand/24YA3461/2024,JN.1.58.2 -Spain/CT-HUGTiP-A2R180/2024,JN.1.58.2 -Iceland/L-5357/2024,JN.1.58.2 -Iceland/L-5352/2024,JN.1.58.2 -Iceland/L-5368/2024,JN.1.58.2 -Iceland/L-5360/2024,JN.1.58.2 -Iceland/L-5354/2024,JN.1.58.2 -Thailand/NIC_KBI_1035/2024,JN.1.58.2 -Ireland/D-NVRL-GIRL00033065/2024,JN.1.58.2 -USA/NY-CDC-QDX95677496/2024,JN.1.58.2 -France/PAC-RELAB-HCL724000127501/2024,JN.1.58.2 -USA/OH-ODH-SC4031747/2024,JN.1.58.2 -USA/NV-SNPHL-788902/2023,JN.1.58.2 -Romania/IS-570955/2024,JN.1.58.2 +Thailand/NIC_KBI_1035/2024,LR.1 +Ireland/D-NVRL-GIRL00033065/2024,LR.1 +USA/NY-CDC-QDX95677496/2024,LR.1 +France/PAC-RELAB-HCL724000127501/2024,LR.1 +USA/OH-ODH-SC4031747/2024,LR.1 +USA/NV-SNPHL-788902/2023,LR.1 +Romania/IS-570955/2024,LR.1 +Spain/CT-HUGTiP-A2R180/2024,LR.2 +Iceland/L-5357/2024,LR.2 +Iceland/L-5352/2024,LR.2 +Iceland/L-5368/2024,LR.2 +Iceland/L-5360/2024,LR.2 +Iceland/L-5354/2024,LR.2 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 848f016d..8830e015 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -261,6 +261,7 @@ "LN": "B.1.1.529.2.86.1.1.53.1", "LP": "B.1.1.529.2.86.1.1.11.1.1.1.3", "LQ": "B.1.1.529.2.86.1.1.18.1", + "LR": "B.1.1.529.2.86.1.1.58.2", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],