diff --git a/lineage_notes.txt b/lineage_notes.txt index 49022f97..a9596f88 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2806,17 +2806,18 @@ XBB.2 Defined by S:D253G, from issue #1173 XBB.2.1 Defined by S:N764R (C23853G), two step mutation on top of C23854A (S:N764K defining of all Omicrons) XBB.2.2 Defined by S:Q613H XBB.2.3 Defined by S:P521S and S:S486P, India/Indonesia/Singapore/USA -XBB.2.3.1 Defined by S:D80Y, England/Sweden/India, #1775 -XBB.2.3.2 Defined by S:G184V, ORF1a:R2159W, India, from #1776 -XBB.2.3.3 Defined by S:182N, India/USA -XBB.2.3.4 Defined by S:478Q, India -XBB.2.3.5 Defined by S:K478N, found mainly in USA and India, from pango-designation issue #1846 -XBB.2.3.6 Defined by N:T166I, mainly Singapore -XBB.2.3.7 Defined by ORF1a:T4087I -XBB.2.3.8 Defined by C2013T, T16389C, S:478R, Singapore/SouthKorea from #1866 -XBB.2.3.9 Defined by C18744T, C19200T, S:S98F, India -XBB.2.3.10 Defined by T5947C, India +XBB.2.3.1 S:D80Y, England/Sweden/India, #1775 +XBB.2.3.2 S:G184V, ORF1a:R2159W, India, from #1776 +XBB.2.3.3 S:182N, India/USA +XBB.2.3.4 S:478Q, India +XBB.2.3.5 S:K478N, found mainly in USA and India, from pango-designation issue #1846 +XBB.2.3.6 N:T166I, mainly Singapore +XBB.2.3.7 ORF1a:T4087I +XBB.2.3.8 C2013T, T16389C, S:478R, Singapore/SouthKorea from #1866 +XBB.2.3.9 S:S98F, C18744T, C19200T, India +XBB.2.3.10 T5947C, India GE.1 Alias of XBB.2.3.10.1, S:K478R, from #1866 +XBB.2.3.11 S:K478R, India, from #1866 XBB.2.4 Defined by S:S486P, Spain/Denmark/Germany XBB.2.5 S:Q613H, from https://github.com/jmcbroome/auto-pango-designation/pull/193 XBB.2.6 Mostly Peru, C5144T, T5731A diff --git a/lineages.csv b/lineages.csv index 701271f9..be75c0c5 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2362496,15 +2362496,6 @@ Germany/BB-RKI-I-1129763/2023,XBB.2.3 Germany/BB-RKI-I-1121710/2023,XBB.2.3 USA/WA-CDC-UW23032377745/2023,XBB.2.3 France/OCC-HCL-723000379101/2023,XBB.2.3 -USA/WA-CDC-UW23032271696/2023,XBB.2.3 -Canada/BC-BCCDC-613801/2023,XBB.2.3 -USA/NJ-GBW-H10-011-0174/2023,XBB.2.3 -USA/NJ-GBW-H20-302-7317/2023,XBB.2.3 -USA/NJ-GBW-H20-265-3224/2023,XBB.2.3 -Australia/WA12538/2023,XBB.2.3 -Australia/WA12565/2023,XBB.2.3 -Chile/RM-23486/2023,XBB.2.3 -USA/NJ-GBW-H20-270-8110/2023,XBB.2.3 BHR/930115716/2023,XBB.2.3 BHR/921210043/2023,XBB.2.3 SouthKorea/KDCA224690/2023,XBB.2.3 @@ -2396935,3 +2396926,81 @@ India/KA-20979_S1_R1_001/2023,GE.1 Singapore/R24MR13/2023,GE.1 India/KA-RFNB-19558/2023,GE.1 India/KA-RFNB-19257/2023,GE.1 +India/KA-RFNB-19564/2023,XBB.2.3.11 +India/KA-RFNB-19304/2023,XBB.2.3.11 +Thailand/NIC_BKK_1307/2023,XBB.2.3.11 +Singapore/R25MR1/2023,XBB.2.3.11 +India/KA-20794_S1_R1_001/2023,XBB.2.3.11 +Singapore/R27AMR138/2023,XBB.2.3.11 +Finland/THL-03780/2023,XBB.2.3.11 +India/DL-ILBS-9320/2023,XBB.2.3.11 +USA/VA-GBW-H20-305-0339/2023,XBB.2.3.11 +USA/VA-GBW-H10-011-5061/2023,XBB.2.3.11 +India/TN-CDFD-M3-186/2023,XBB.2.3.11 +Singapore/R23MR461/2023,XBB.2.3.11 +India/KA-RFNB-19433/2023,XBB.2.3.11 +India/TN-CDFD-M3-223/2023,XBB.2.3.11 +USA/CA-CDC-QDX49226150/2023,XBB.2.3.11 +Singapore/R24MR576/2023,XBB.2.3.11 +India/DL-ILBS-8495/2023,XBB.2.3.11 +India/MH-INSACOGIP17188/2023,XBB.2.3.11 +USA/WA-CDC-UW23041144469/2023,XBB.2.3.11 +USA/NY-GBW-H10-010-8579/2023,XBB.2.3.11 +India/KA-RFNB-19553/2023,XBB.2.3.11 +USA/WA-CDC-UW23032271696/2023,XBB.2.3.11 +HongKong/VB23036716/2023,XBB.2.3.11 +USA/NY-GBW-H20-312-2081/2023,XBB.2.3.11 +India/DL-ILBS-9250/2023,XBB.2.3.11 +Austria/AGES-1134445/2023,XBB.2.3.11 +India/TN-CDFD-M3-324/2023,XBB.2.3.11 +India/TN-CDFD-M3-325/2023,XBB.2.3.11 +India/KA-RFNB-19498/2023,XBB.2.3.11 +India/TN-CDFD-M3-196/2023,XBB.2.3.11 +Singapore/R26MR94/2023,XBB.2.3.11 +Singapore/R24MR598/2023,XBB.2.3.11 +Singapore/R25MR6/2023,XBB.2.3.11 +Canada/BC-BCCDC-613801/2023,XBB.2.3.11 +Singapore/R27AMR206/2023,XBB.2.3.11 +USA/VA-CDC-LC1037836/2023,XBB.2.3.11 +USA/NJ-GBW-H20-285-4348/2023,XBB.2.3.11 +USA/NJ-GBW-H10-012-2570/2023,XBB.2.3.11 +India/KA-RFNB-19631/2023,XBB.2.3.11 +Singapore/R23MR245/2023,XBB.2.3.11 +Singapore/R7NP55/2023,XBB.2.3.11 +USA/NJ-GBW-H10-011-0174/2023,XBB.2.3.11 +USA/NJ-GBW-H20-302-7317/2023,XBB.2.3.11 +USA/NJ-GBW-H20-265-3224/2023,XBB.2.3.11 +India/JK-15/2023,XBB.2.3.11 +Australia/SA531219/2023,XBB.2.3.11 +Australia/SA535645/2023,XBB.2.3.11 +USA/MD-CDC-QDX49005198/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45009/2023,XBB.2.3.11 +Sweden/9473525976/2023,XBB.2.3.11 +India/GJ-INSACOG-GBRC12758/2023,XBB.2.3.11 +India/GJ-INSACOG-GBRC12118/2023,XBB.2.3.11 +India/UP-AIIMS-COVGE36144/2023,XBB.2.3.11 +Australia/WA12565/2023,XBB.2.3.11 +USA/VA-GBW-H10-012-2242/2023,XBB.2.3.11 +USA/VA-GBW-H20-317-8903/2023,XBB.2.3.11 +India/MH-IP17997/2023,XBB.2.3.11 +India/GJ-INSACOG-GBRC12517/2023,XBB.2.3.11 +India/HR-607000647556/2023,XBB.2.3.11 +India/HR-NII-1642/2023,XBB.2.3.11 +Chile/RM-23486/2023,XBB.2.3.11 +USA/NJ-GBW-H20-270-8110/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45669/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45668/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45614/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45280/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45090/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45989/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45952/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45636/2023,XBB.2.3.11 +Australia/WA12538/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45110/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45111/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45978/2023,XBB.2.3.11 +Australia/NSW-ICPMR-46060/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45585/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45676/2023,XBB.2.3.11 +Australia/NSW-ICPMR-45151/2023,XBB.2.3.11