From 67e00ec0e4f3eb9f937b32e2cd67ab23ec267cbb Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Thu, 21 Dec 2023 18:57:36 +0100 Subject: [PATCH] Designate KJ.1 (XBB.1.16.32.1, S:T573I, ORF1a:P1659L, South Africa) --- lineage_notes.txt | 1 + lineages.csv | 74 ++++++++++++++++---------------- pango_designation/alias_key.json | 1 + 3 files changed, 39 insertions(+), 37 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 2366d8eb..fb3b8e2d 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -3339,6 +3339,7 @@ XBB.1.16.29 S:T883I, on C7765T branch, TrinidadTobago XBB.1.16.30 S:E554Q, on C7765T branch, USA/Germany XBB.1.16.31 T9004C, on C7765T branch XBB.1.16.32 S:S490P, South Africa/USA +KJ.1 Alias of XBB.1.16.32.1, S:T573I, ORF1a:P1659L, South Africa XBB.1.17 Defined by T27995C and ORF1a:L469F, from #1712 XBB.1.17.1 Defined by S:215H, S:S486P, from #1712 GA.1 Alias of XBB.1.17.1.1, ORF1a:G728C diff --git a/lineages.csv b/lineages.csv index fd855206..5acd307e 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2510713,40 +2510713,40 @@ USA/NMDOH-2023045622/2023,XBB.1.16.32 SouthAfrica/CERI-KRISP-K059302_COVID477/2023,XBB.1.16.32 SouthAfrica/CERI-KRISP-K059321_COVID477/2023,XBB.1.16.32 NewZealand/23YA4809/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059293_COVID477/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059292_COVID477/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059317_COVID477/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059286_COVID477/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K058083/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K057314/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K057300/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K057304/2023,XBB.1.16.32 -Sweden/C-03_SE600_000200653360N2/2023,XBB.1.16.32 -Sweden/C-03_SE600_000200648818N2/2023,XBB.1.16.32 -SouthAfrica/NICD-N56881/2023,XBB.1.16.32 -SouthAfrica/NICD-R10471/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K057296/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K057297/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059658/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059335_COVID477/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059336_COVID477/2023,XBB.1.16.32 -SouthAfrica/NICD-N56657/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059305_COVID477/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059642/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059611/2023,XBB.1.16.32 -SouthAfrica/NICD-WC-0190/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K057315/2023,XBB.1.16.32 -SouthAfrica/NICD-GP-0546/2023,XBB.1.16.32 -England/WSI-33112E13/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059853/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059316_COVID477/2023,XBB.1.16.32 -SouthAfrica/NICD-R09918/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K058328/2023,XBB.1.16.32 -SouthAfrica/NICD-N56848/2023,XBB.1.16.32 -SouthAfrica/CERI-KRISP-K059284_COVID477/2023,XBB.1.16.32 -Australia/QLD0x0138E9/2023,XBB.1.16.32 -USA/CA-HLX-STM-8ARCC3MV5/2023,XBB.1.16.32 -USA/CA-HLX-STM-7K9ESDNUQ/2023,XBB.1.16.32 -USA/CA-CDC-LC1061212/2023,XBB.1.16.32 -USA/PA-CDC-QDX86356367/2023,XBB.1.16.32 -USA/TX-HMH-134713/2023,XBB.1.16.32 +SouthAfrica/CERI-KRISP-K059293_COVID477/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059292_COVID477/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059317_COVID477/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059286_COVID477/2023,KJ.1 +SouthAfrica/CERI-KRISP-K058083/2023,KJ.1 +SouthAfrica/CERI-KRISP-K057314/2023,KJ.1 +SouthAfrica/CERI-KRISP-K057300/2023,KJ.1 +SouthAfrica/CERI-KRISP-K057304/2023,KJ.1 +Sweden/C-03_SE600_000200653360N2/2023,KJ.1 +Sweden/C-03_SE600_000200648818N2/2023,KJ.1 +SouthAfrica/NICD-N56881/2023,KJ.1 +SouthAfrica/NICD-R10471/2023,KJ.1 +SouthAfrica/CERI-KRISP-K057296/2023,KJ.1 +SouthAfrica/CERI-KRISP-K057297/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059658/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059335_COVID477/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059336_COVID477/2023,KJ.1 +SouthAfrica/NICD-N56657/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059305_COVID477/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059642/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059611/2023,KJ.1 +SouthAfrica/NICD-WC-0190/2023,KJ.1 +SouthAfrica/CERI-KRISP-K057315/2023,KJ.1 +SouthAfrica/NICD-GP-0546/2023,KJ.1 +England/WSI-33112E13/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059853/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059316_COVID477/2023,KJ.1 +SouthAfrica/NICD-R09918/2023,KJ.1 +SouthAfrica/CERI-KRISP-K058328/2023,KJ.1 +SouthAfrica/NICD-N56848/2023,KJ.1 +SouthAfrica/CERI-KRISP-K059284_COVID477/2023,KJ.1 +Australia/QLD0x0138E9/2023,KJ.1 +USA/CA-HLX-STM-8ARCC3MV5/2023,KJ.1 +USA/CA-HLX-STM-7K9ESDNUQ/2023,KJ.1 +USA/CA-CDC-LC1061212/2023,KJ.1 +USA/PA-CDC-QDX86356367/2023,KJ.1 +USA/TX-HMH-134713/2023,KJ.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 5db0493a..ac432e6f 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -231,6 +231,7 @@ "KF": "XBB.1.9.1.15.1.1", "KG": "B.1.1.529.2.75.3.4.1.1.1.1.1.7.1.5", "KH": "XBB.2.3.3.1.2.1.1.1.1", + "KJ": "XBB.1.16.32", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],