diff --git a/lineage_notes.txt b/lineage_notes.txt
index d4f7bc65..4c86d3a7 100644
--- a/lineage_notes.txt
+++ b/lineage_notes.txt
@@ -1214,6 +1214,7 @@ JN.3	Alias of B.1.1.529.2.86.1.3, ORF1a:T2087I, Europe, from sars-cov-2-variants
 JN.3.1	Alias of B.1.1.529.2.86.1.3.1, S:L922F, ORF7a:T28I, Spain
 JN.3.2	Alias of B.1.1.529.2.86.1.3.2, N:H300Y, ORF1a:P892S, from #2445
 JN.3.2.1	Alias of B.1.1.529.2.86.1.3.2.1, S:F456V, N:S327L, Germany, from #2445
+JN.3.3	Alias of B.1.1.529.2.86.1.3.3, A5641G, C14478T, C21676T
 JN.4	Alias of B.1.1.529.2.86.1.4, S:A475V, lacking C12815T of most BA.2.86.1, Belgium/Netherlands/Denmark, from sars-cov-2-variants/lineage-proposals#1009
 JN.5	Alias of B.1.1.529.2.86.1.5, N:T135I
 JN.5.1	Alias of B.1.1.529.2.86.1.5.1, S:A475S, T2950A, A28052G, C29541T, England/Belgium, from sars-cov-2-variants/lineage-proposals#954
@@ -1227,6 +1228,9 @@ JN.12	Alias of B.1.1.529.2.86.1.12, S:F456V, ORF1a:A498G, from sars-cov-2-varian
 JN.13	Alias of B.1.1.529.2.86.1.13, A14397G
 JN.13.1	Alias of B.1.1.529.2.86.1.13.1, S:A475V, USA/Malaysia, from sars-cov-2-variants/lineage-proposals#1386
 JN.14	Alias of B.1.1.529.2.86.1.14, C29614T, S:S680F, Thailand/Japan，from #2424
+JN.15	Alias of B.1.1.529.2.86.1.15, C24319T, Japan
+JN.16	Alias of B.1.1.529.2.86.1.16, ORF3a:T229I, Japan
+JN.17	Alias of B.1.1.529.2.86.1.17, C12781T, Japan
 BA.2.86.2	Alias of B.1.1.529.2.86.2, ORF7a:E22D, South Africa/Botswana，from sars-cov-2-variants/lineage-proposals/issues/756
 BA.2.86.3	Alias of B.1.1.529.2.86.3, C222T, C1960T, T12775C, South Africa
 JQ.1	Alias of B.1.1.529.2.86.3.1, S:T95I, Denmark/France/South Africa, from sars-cov-2-variants/lineage-proposals#906
diff --git a/lineages.csv b/lineages.csv
index abd4709e..adb06bca 100644
--- a/lineages.csv
+++ b/lineages.csv
@@ -2464822,10 +2464822,6 @@ France/OCC-CHU-TLS-6004134466/2023,JN.3
 France/OCC-CHU-TLS-2324811913/2023,JN.3
 Spain/PV-HUD-39595171/2023,JN.3
 Spain/PV-HUD-39100774/2023,JN.3
-USA/NY-CDC-QDX85474806/2023,JN.3
-England/CLIMB-CM7Y8RUT/2023,JN.3
-England/CLIMB-CM7Y8HO4/2023,JN.3
-England/CLIMB-CM7YJ84T/2023,JN.3
 England/CLIMB-CM7YEZQY/2023,JN.3
 England/CLIMB-CM7YKF4X/2023,JN.3
 England/CLIMB-CM7YFSRA/2023,JN.3
@@ -2545544,3 +2545540,1418 @@ Japan/FR021-0308/2024,KP.3.3
 Japan/SUPCRC-6338/2024,KP.3.3
 Japan/SUPCRC-6359/2024,KP.3.3
 Japan/SUPCRC-6355/2024,KP.3.3
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