diff --git a/lineage_notes.txt b/lineage_notes.txt index 84c10abd..92e81da6 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1054,12 +1054,12 @@ JN.1.1 Alias of B.1.1.529.2.86.1.1.1, ORF1a:F499L, C11747T, France, from sars-co JN.1.1.1 Alias of B.1.1.529.2.86.1.1.1.1, S:T572I on C9142T branch, France/Sweden/Poland, from sars-cov-2-variants/lineage-proposals#1097 JN.1.1.2 Alias of B.1.1.529.2.86.1.1.1.2, S:G181E, France, from sars-cov-2-variants/lineage-proposals#1147 JN.1.1.3 Alias of B.1.1.529.2.86.1.1.1.3, S:R346T +LT.1 Alias of B.1.1.529.2.86.1.1.1.3.1, S:F456V, L176F, USA/Canada JN.1.1.4 Alias of B.1.1.529.2.86.1.1.1.4, S:V1264L on C9142T branch, from #2476 JN.1.1.5 Alias of B.1.1.529.2.86.1.1.1.5, S:R346T on C9142T branch, from #2492 KR.1 Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L (22928C), after C28498T, from sars-cov-2-variants/lineage-proposals#1253 KR.1.1 Alias of B.1.1.529.2.86.1.1.1.5.1.1, S:F59L KR.1.2 Alias of B.1.1.529.2.86.1.1.1.5.1.2, S:R683Q -KR.2 Alias of B.1.1.529.2.86.1.1.1.5.2, S:F456V, L176F, USA/Canada KR.3 Alias of B.1.1.529.2.86.1.1.1.5.3, S:F456L (22930A) KR.4 Alias of B.1.1.529.2.86.1.1.1.5.4, S:Q218E KR.5 Alias of B.1.1.529.2.86.1.1.1.5.5, ORF1a:L642F, ORF1a:T2087I, Brazil @@ -1070,6 +1070,7 @@ KZ.1.1.1 Alias of B.1.1.529.2.86.1.1.1.6.1.1.1, S:T572I from #2548 JN.1.1.7 Alias of B.1.1.529.2.86.1.1.1.7, S:S31F, from sars-cov-2-variants/lineage-proposals#1157 LC.1 Alias of B.1.1.529.2.86.1.1.1.7.1, S:R346T JN.1.1.8 Alias of B.1.1.529.2.86.1.1.1.8, S:F456L (22930A), S:H445P, ORF1a:S2083I, C850T +JN.1.1.9 Alias of B.1.1.529.2.86.1.1.1.9, G2035A, on C9142T branch, China JN.1.2 Alias of B.1.1.529.2.86.1.1.2, S:M1229I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1087 JN.1.2.1 Alias of B.1.1.529.2.86.1.1.2.1, S:H1101Y, Ireland, from sars-cov-2-variants/lineage-proposals#1322 JN.1.3 Alias of B.1.1.529.2.86.1.1.3, ORF8:Q18*, Netherlands @@ -1089,6 +1090,7 @@ LE.1 Alias of B.1.1.529.2.86.1.1.4.7.1, S:R346T LE.1.1 Alias of B.1.1.529.2.86.1.1.4.7.1.1, S:F456V LE.1.2 Alias of B.1.1.529.2.86.1.1.4.7.1.2, S:K304N LE.2 Alias of B.1.1.529.2.86.1.1.4.7.2, S:R346S, C7423T +JN.1.4.8 Alias of B.1.1.529.2.86.1.1.4.7, S:S60P, T13578C, USA JN.1.5 Alias of B.1.1.529.2.86.1.1.5, ORF1b:V1271T, Singapore/Malaysia/Indonesia, from #2419 JN.1.6 Alias of B.1.1.529.2.86.1.1.6, G22627A JN.1.6.1 Alias of B.1.1.529.2.86.1.1.6.1, S:R346T, Sweden, from sars-cov-2-variants/lineage-proposals#1089 @@ -1098,7 +1100,9 @@ JN.1.7.2 Alias of B.1.1.529.2.86.1.1.7.2, ORF1b:C1563F, Americas JN.1.7.3 Alias of B.1.1.529.2.86.1.1.7.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1343 JN.1.7.4 Alias of B.1.1.529.2.86.1.1.7.4, S:F456L (T22928C) JN.1.7.5 Alias of B.1.1.529.2.86.1.1.7.5, ORF1a:H3395Y -LK.1 Alias of B.1.1.529.2.86.1.1.7.5, S:445P, ORF1a:R1170C, USA/Canada +LK.1 Alias of B.1.1.529.2.86.1.1.7.5.1, S:445P, ORF1a:R1170C, USA/Canada +JN.1.7.6 Alias of B.1.1.529.2.86.1.1.7.6, S:S60P, ORF1a:P1609S, Wales +JN.1.7.7 Alias of B.1.1.529.2.86.1.1.7.7, ORF1b:K2557R JN.1.8 Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I JN.1.8.1 Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, after A12928G, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097 JN.1.8.2 Alias of B.1.1.529.2.86.1.1.8.2, S:R346T, after A12928G, from sars-cov-2-variants/lineage-proposals#1089 @@ -1109,6 +1113,14 @@ JN.1.9 Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada, from #2410 JN.1.9.1 Alias of B.1.1.529.2.86.1.1.9.1, S:T572I, ORF1a:A3143V, from sars-cov-2-variants/lineage-proposals#1097 JN.1.9.2 Alias of B.1.1.529.2.86.1.1.9.2, S:R346T LB.1 Alias of B.1.1.529.2.86.1.1.9.2.1, S:F456L (T22928C) +LB.1.1 Alias of B.1.1.529.2.86.1.1.9.2.1.1, S:V1104L, Canada +LB.1.2 Alias of B.1.1.529.2.86.1.1.9.2.1.2, ORF1b:G2068R +LB.1.2.1 Alias of B.1.1.529.2.86.1.1.9.2.1.2.1, S:R190T +LB.1.3 Alias of B.1.1.529.2.86.1.1.9.2.1.3, ORF1b:T1555I +LB.1.4 Alias of B.1.1.529.2.86.1.1.9.2.1.4, ORF1a:A1473V +LB.1.5 Alias of B.1.1.529.2.86.1.1.9.2.1.5, S:L1143F, ORF1b:T1621I, Asia +LB.1.6 Alias of B.1.1.529.2.86.1.1.9.2.1.6, S:I670M, England/Canada +LB.1.7 Alias of B.1.1.529.2.86.1.1.9.2.1.7, ORF1a:L1507F, G21123T JN.1.10 Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1135 JN.1.11 Alias of B.1.1.529.2.86.1.1.11, S:V1104L, G17334T, India, from #2446 JN.1.11.1 Alias of B.1.1.529.2.86.1.1.11.1, S:F456L, after ORF1a:T2283I, India, from sars-cov-2-variants/lineage-proposals#1253 @@ -1117,12 +1129,17 @@ KP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T, from sars-cov-2-variants/l KP.1.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1, S:K182N, after ORF1b:L2213F, from #2510 KP.1.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.2, S:P1162S, T2152C KP.1.1.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3, C4999T, many with S:S31del +LP.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1, S:M1229I +LP.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.2, S:S71Y, ORF1b:T2286I +KP.1.1.4 Alias of B.1.1.529.2.86.1.1.11.1.1.1.4, S:R214H, C11866T, C23929T KP.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.2, S:T572I KP.2 Alias of B.1.1.529.2.86.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 KP.2.1 Alias of B.1.1.529.2.86.1.1.11.1.2.1, S:Q1201K, from sars-cov-2-variants/lineage-proposals#1440 KP.2.2 Alias of B.1.1.529.2.86.1.1.11.1.2.2, S:F59L, S:K1266R, from sars-cov-2-variants/lineage-proposals#1446 KP.2.3 Alias of B.1.1.529.2.86.1.1.11.1.2.3, S:H146Q, ORF3a:K67N, S:31del KP.2.3.1 Alias of B.1.1.529.2.86.1.1.11.1.2.3.1, S:A475V +KP.2.3.2 Alias of B.1.1.529.2.86.1.1.11.1.2.3.2, S:G184V +KP.2.3.3 Alias of B.1.1.529.2.86.1.1.11.1.2.3.3, S:N185T KP.2.4 Alias of B.1.1.529.2.86.1.1.11.1.2.4, S:T250N KP.2.5 Alias of B.1.1.529.2.86.1.1.11.1.2.5, S:N185D KP.2.6 Alias of B.1.1.529.2.86.1.1.11.1.2.6, S:W64R @@ -1135,12 +1152,19 @@ KP.2.12 Alias of B.1.1.529.2.86.1.1.11.1.2.12, S:V1176F, G25088T, Australia KP.2.13 Alias of B.1.1.529.2.86.1.1.11.1.2.13, S:K478E, N:P6T, C9565T, C24553T, USA/Canada KP.2.14 Alias of B.1.1.529.2.86.1.1.11.1.2.14, S:G184V, S:S31F KP.2.15 Alias of B.1.1.529.2.86.1.1.11.1.2.15, A10861G, S:31del, USA/Canada +KP.2.16 Alias of B.1.1.529.2.86.1.1.11.1.2.16, ORF8:F6S KP.3 Alias of B.1.1.529.2.86.1.1.11.1.3, S:Q493E, from sars-cov-2-variants/lineage-proposals#1410 KP.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1, G15372T, A19722G KP.3.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1, ORF1a:S4286C, C12616T, S:S31del, Spain +KP.3.1.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.2, S:S151I +KP.3.1.3 Alias of B.1.1.529.2.86.1.1.11.1.3.1.3, S:S31F +KP.3.1.4 Alias of B.1.1.529.2.86.1.1.11.1.3.1.4, ORF1b:P1675S KP.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2, A2611C, C22858T KP.3.2.1 Alias of B.1.1.529.2.86.1.1.11.1.3.2.1, S:A263V, Australia/Singapore KP.3.2.2 Alias of B.1.1.529.2.86.1.1.11.1.3.2.2, S:W258R +KP.3.2.3 Alias of B.1.1.529.2.86.1.1.11.1.3.2.3, ORF3a:S40P, C11518T +KP.3.2.4 Alias of B.1.1.529.2.86.1.1.11.1.3.2.4, ORF3a:L73F +KP.3.2.5 Alias of B.1.1.529.2.86.1.1.11.1.3.2.5, S:V62F KP.3.3 Alias of B.1.1.529.2.86.1.1.11.1.3.3, N:R204P KP.4 Alias of B.1.1.529.2.86.1.1.11.1.4, C6070T, India KP.4.1 Alias of B.1.1.529.2.86.1.1.11.1.4.1, S:R346T, C19884T @@ -1156,23 +1180,34 @@ KS.1.1 Alias of B.1.1.529.2.86.1.1.13.1.1, S:T22N, C19716T, Singapore/Taiwan/Can KS.1.2 Alias of B.1.1.529.2.86.1.1.13.1.2, S:T678I, Russia JN.1.14 Alias of B.1.1.529.2.86.1.1.14, S:R346S, after C26894T, C25680T, USA JN.1.15 Alias of B.1.1.529.2.86.1.1.15, S:A688V +JN.1.15.1 Alias of B.1.1.529.2.86.1.1.15.1, S:F456L, ORF3a:R122S, Ecuador +LU.1 Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T JN.1.16 Alias of B.1.1.529.2.86.1.1.16, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 JN.1.16.1 Alias of B.1.1.529.2.86.1.1.16.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 LF.1 Alias of B.1.1.529.2.86.1.1.16.1.1, ORF1a:A1268T, ORF1a:S2103F LF.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1, S:P1263L +LF.1.1.1 Alias of B.1.1.529.2.86.1.1.16.1.1.1.1, S:S31-, T19209C LF.2 Alias of B.1.1.529.2.86.1.1.16.1.2, ORF1a:K247R, ORF3a:Y184H, many with S:S31del LF.3 Alias of B.1.1.529.2.86.1.1.16.1.3, ORF1a:A4285V, Peru +LF.3.1 Alias of B.1.1.529.2.86.1.1.16.1.3.1, S:445P JN.1.16.2 Alias of B.1.1.529.2.86.1.1.16.2, C4777T LA.1 Alias of B.1.1.529.2.86.1.1.16.2.1, S:R346T LA.2 Alias of B.1.1.529.2.86.1.1.16.2.2, S:R346I +JN.1.16.3 Alias of B.1.1.529.2.86.1.1.16.3, S:T572I JN.1.17 Alias of B.1.1.529.2.86.1.1.17, S:A222V, USA JN.1.18 Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089 JN.1.18.1 Alias of B.1.1.529.2.86.1.1.18.1, S:T250N, from sars-cov-2-variants/lineage-proposals#1414 +LQ.1 Alias of B.1.1.529.2.86.1.1.18.1.1, S:F456L (22928C) +LQ.1.1 Alias of B.1.1.529.2.86.1.1.18.1.1.1, S:P272H +LQ.2 Alias of B.1.1.529.2.86.1.1.18.1.2, S:N556K, China +LQ.3 Alias of B.1.1.529.2.86.1.1.18.1.3, ORF1a:T1761I, Russia JN.1.18.2 Alias of B.1.1.529.2.86.1.1.18.2, S:F59S, after C4331T, T22321C, from sars-cov-2-variants/lineage-proposals#1441 JN.1.18.3 Alias of B.1.1.529.2.86.1.1.18.3, S:F456V -JN.1.18.4 Alias of B.1.1.529.2.86.1.1.18.4, S:F456L (T22930G), ORF6:I60T, T23036C, Ghana -LH.1 Alias of B.1.1.529.2.86.1.1.18.4.1, S:K182I -LH.2 Alias of B.1.1.529.2.86.1.1.18.4.2, S:I197V, S:P251H +JN.1.18.4 Alias of B.1.1.529.2.86.1.1.18.4, S:F456L (T22930G), ORF6:I60T, T23036C, Ghana from #2567 +LH.1 Alias of B.1.1.529.2.86.1.1.18.4.1, S:K182I from #2567 +LH.2 Alias of B.1.1.529.2.86.1.1.18.4.2, S:I197V, S:P251H from #2567 +JN.1.18.5 Alias of B.1.1.529.2.86.1.1.18.5, S:F456L (T22930A) +LS.1 Alias of B.1.1.529.2.86.1.1.18.5.1, S:Y28H, S:L189P, S:184-188del, ORF1a:E940D JN.1.19 Alias of B.1.1.529.2.86.1.1.19, ORF8:I71V JN.1.20 Alias of B.1.1.529.2.86.1.1.20, S:S31F, directly on JN.1 polytomy JN.1.21 Alias of B.1.1.529.2.86.1.1.21, S:H1058Y, from sars-cov-2-variants/lineage-proposals#1162 @@ -1234,7 +1269,7 @@ JN.1.49 Alias of B.1.1.529.2.86.1.1.49, ORF3a:T89I, India JN.1.49.1 Alias of B.1.1.529.2.86.1.1.49.1, S:R346T JN.1.49.2 Alias of B.1.1.529.2.86.1.1.49.2, S:F456L JN.1.50 Alias of B.1.1.529.2.86.1.1.50, S:H445P,S:F456L, S:A67V, S:L249F, Europe from #2587 -JN.1.50.1 Alias of B.1.1.529.2.86.1.1.50.1, S:R346T +JN.1.50.1 Alias of B.1.1.529.2.86.1.1.50.1, S:R346T from #2587 JN.1.51 Alias of B.1.1.529.2.86.1.1.51, C4795T JN.1.51.1 Alias of B.1.1.529.2.86.1.1.51.1, S:F456L LJ.1 Alias of B.1.1.529.2.86.1.1.51.1.1, S:T22N @@ -1244,12 +1279,23 @@ JN.1.53.1 Alias of B.1.1.529.2.86.1.1.53.1, C583T LN.1 Alias of B.1.1.529.2.86.1.1.53.1.1, S:R346T LN.1.1 Alias of B.1.1.529.2.86.1.1.53.1.1.1, S:F456L, S:478I JN.1.54 Alias of B.1.1.529.2.86.1.1.54, A9085G -JN.1.54.1 Alias of B.1.1.529.2.86.1.1.54.1, S:F456L, S:V407I, Spain +JN.1.54.1 Alias of B.1.1.529.2.86.1.1.54.1, S:F456L, S:V407I, Spain, from #2584 JN.1.55 Alias of B.1.1.529.2.86.1.1.55, ORF1a:K399R JN.1.55.1 Alias of B.1.1.529.2.86.1.1.55.1, S:F456L, ORF1a:T1017I, Thailand JN.1.55.2 Alias of B.1.1.529.2.86.1.1.55.2, S:F456L, ORF1b:P2321H, Brazil JN.1.56 Alias of B.1.1.529.2.86.1.1.56, Orf3a:Q213K JN.1.56.1 Alias of B.1.1.529.2.86.1.1.56.1, S:G181R, S:R346T, S:F456V, ORF1a:T1638I, Sinapore/South Korea from #2582 +JN.1.57 Alias of B.1.1.529.2.86.1.1.57, ORF1b:A1219S, A11947G +JN.1.57.1 Alias of B.1.1.529.2.86.1.1.57.1, S:S60P, Taiwan/South Korea +JN.1.58 Alias of B.1.1.529.2.86.1.1.58, ORF1b:K2557R +JN.1.58.1 Alias of B.1.1.529.2.86.1.1.58.1, S:S60P +JN.1.58.2 Alias of B.1.1.529.2.86.1.1.58.2, S:R346T +LR.1 Alias of B.1.1.529.2.86.1.1.58.2.1, S:F456L (22928C) +LR.2 Alias of B.1.1.529.2.86.1.1.58.2.2, S:F456V +JN.1.59 Alias of B.1.1.529.2.86.1.1.59, ORF1a:A1204S +JN.1.60 Alias of B.1.1.529.2.86.1.1.60, C4543T +JN.1.61 Alias of B.1.1.529.2.86.1.1.61, S:K444R, Brazil +JN.1.62 Alias of B.1.1.529.2.86.1.1.62, S:F456L (22928C), S:V62F, S:R681H JN.2 Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284 JN.2.1 Alias of B.1.1.529.2.86.1.2.1, S:S31F, Sweden/Australia JN.2.2 Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433 @@ -3996,7 +4042,7 @@ XDK.2 S:K679R, T4996A, C11173T, A23598G, C27297T XDK.3 S:F456L, ORF1a:F3397L XDK.4 C25626T XDK.4.1 S:F456L, France/Luxembourg -XDK.5 S:F456L, C22388T, Spain +XDK.5 S:F456L, C22388T, Spain from #2611 XDK.6 S:F456L, S:R237K, S:Q1201K, England XDL Recombinant lineage of EG.5.1.1 and non-EG.5 (breakpoint between 25573-29624) with S:I1114T, most with S:L455F(G22927T), China, from #2351 XDM Recombinant lineage of XDA, GW.5, XDA (breakpoints between 22107-22926 and 24047-25838), from sars-cov-2-variants/lineage-proposals#1163 @@ -4016,6 +4062,7 @@ XDU Recombinant lineage of BA.2.86.1, XBB.1.16 (breakpoint between 11957-12729) XDV Recombinant lineage of XDE, JN.1, XDE, JN.1 (breakpoints between 19327-21608, 27916-28296, 28959-29534), USA/China, from #2402 XDV.1 S:F456L (T22930A), on C11572T branch, Hong Kong XDW Recombinant lineage of JN.2 (T1030C branch), XDA (breakpoint between 23424-23603), Japan, from sars-cov-2-variants/lineage-proposals#1471 +XDY Recombinant lineage of LB.1.2.1 and KP.3.2 (breakpoint between 22131-22599), Sweden/Spain, from sars-cov-2-variants/lineage-proposals#1559 *A.2.1 Withdrawn: Lineage with sequences predominantly from Panama *A.8 Withdrawn: Indian lineage merged with A.9 *A.10 Withdrawn: Spanish lineage reassigned to A.5 @@ -4303,3 +4350,4 @@ XDW Recombinant lineage of JN.2 (T1030C branch), XDA (breakpoint between 23424-2 *HK.3.11 Withdrawn, as part of 14988C sublineage of EG.5.1.1, not HK.3: Alias of XBB.1.9.2.5.1.1.3.11, S:A475V, Finland/Denmark/Sweden *JN.1.33 Redesignated as JN.1.39.3, Alias of B.1.1.529.2.86.1.1.33, S:A67V, G2782T, C5512T, China from #2498 *KD.5 Withdrawn: Alias of XBC.1.3.1.5, S:L244F, Australia, indel artefact caused false S:L244F (#2405) +*KR.2 Redesignated as LT.1 (JN.1.1.3.1) due to lack of C9142T diff --git a/lineages.csv b/lineages.csv index 1913efcb..046af2fb 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2523082,29 +2523082,12 @@ Russia/SPE-RII-MH166801S/2024,JN.1.18.1 USA/CA-HLX-STM-6C62NMPTA/2024,JN.1.18.1 Luxembourg/LNS1547961/2024,JN.1.18.1 Netherlands/ZH-RIVM-137323/2024,JN.1.18.1 -Russia/SPE-RII-MH168035S/2024,JN.1.18.1 -Pakistan/NIH-B168-S6/2024,JN.1.18.1 Anhui/CZCDC-CX24004/2024,JN.1.18.1 -CHN/CZCDC-2024-CX24004/2024,JN.1.18.1 -Russia/SPE-RII-MH167354S/2024,JN.1.18.1 -Russia/SPE-RII-MH167393S/2024,JN.1.18.1 USA/HI-H2327738/2024,JN.1.18.1 USA/HI-H2327728/2024,JN.1.18.1 USA/HI-H2327689/2024,JN.1.18.1 USA/HI-H2327690/2024,JN.1.18.1 -CHN/SH-dsyy-2024013001/2024,JN.1.18.1 -Shanghai/SCDC-dsyy-013001/2024,JN.1.18.1 -CHN/HB-Xiangyang-3902/2024,JN.1.18.1 -Shanghai/SCDC-HP02-24/2024,JN.1.18.1 -CHN/SH-HP202402-24/2024,JN.1.18.1 -Hubei/HCDC-XY3902/2024,JN.1.18.1 Shanghai/SCDC-NCOV-34/2024,JN.1.18.1 -CHN/SH-NCOV24-34/2024,JN.1.18.1 -CHN/SH-NCOV24-045/2024,JN.1.18.1 -Shanghai/SCDC-N-045/2024,JN.1.18.1 -CHN/SH-FX20240205-017/2024,JN.1.18.1 -Shanghai/SCDC-FX0205-017/2024,JN.1.18.1 -Singapore/R14MQ46/2024,JN.1.18.1 England/WSI-3317BBE4/2023,JN.1.30 Belgium/UGent-1990/2023,JN.1.30 France/IDF-IPP00154/2024,JN.1.30 @@ -2534635,84 +2534618,8 @@ Japan/PG-588261/2023,XDU Japan/PG-596202/2024,XDU Japan/PG-589770/2024,XDU Japan/PG-589589/2024,XDU -USA/CO-CDPHE-41756947/2024,XDP.1 -USA/CO-CDPHE-41756651/2024,XDP.1 -USA/TX-UHS-UTHSA10344-P0/2024,XDP.1 PuertoRico/PR-CVL-022725/2024,XDP.1 -USA/IVY-G43R83M3/2024,XDP.1 -USA/CA-HLX-STM-KCJW6YKFF/2024,XDP.1 -USA/HI-H2327852/2024,XDP.1 -USA/TX-PHH-CS-03527/2024,XDP.1 -USA/CO-CDPHE-41756945/2024,XDP.1 -USA/CA-HLX-STM-EU58Z4HUS/2024,XDP.1 -USA/CA-HLX-STM-W6TBTUZXH/2024,XDP.1 -USA/CA-HLX-STM-SMTBCSM5E/2024,XDP.1 PuertoRico/PR-CVL-022181/2024,XDP.1 -USA/FL-CDC-QDX92611409/2024,XDP.1 -USA/TX-HMH-M-139097/2024,XDP.1 -USA/CA-HLX-STM-YKHM7JMNC/2024,XDP.1 -Scotland/CLIMB-CM7YRMR9/2024,XDP.1 -USA/FL-CDC-LC1100822/2024,XDP.1 -CanaryIslands/CHUIMI-021437156877/2024,XDP.1 -USA/CA-HLX-STM-VYMKCJFV6/2024,XDP.1 -USA/CA-HLX-STM-QTX7KPARH/2024,XDP.1 -USA/NC-CDC-LC1091367/2024,XDP.1 -Canada/AB-ABPHL-112849/2024,XDP.1 -USA/NY-CDC-QDX91016989/2024,XDP.1 -USA/CA-MCPHL-GBD00068/2024,XDP.1 -USA/AZ-ASPHL-0494/2024,XDP.1 -Curacao/CW-RIVM-137680/2024,XDP.1 -USA/OH-ODH-SC4030565/2024,XDP.1 -Curacao/CW-RIVM-137929/2024,XDP.1 -CanaryIslands/CHUIMI-021439986118/2024,XDP.1 -Scotland/CLIMB-CM7YFXDG/2024,XDP.1 -USA/AZ-USAFSAM-S22290/2024,XDP.1 -USA/CA-HLX-STM-F2X4MJ96J/2024,XDP.1 -USA/CA-CDPH-500133979/2024,XDP.1 -England/CLIMB-CM7YGYG8/2024,XDP.1 -USA/2024CV0494/2024,XDP.1 -USA/IL-RIPHL_14379_G/2024,XDP.1 -USA/IL-RIPHL_32797_G/2024,XDP.1 -USA/CA-KP001227/2024,XDP.1 -USA/CA-KP000977/2024,XDP.1 -USA/CA-GBW-H20-360-5458/2024,XDP.1 -Russia/SPE-RII-MH167072S/2024,XDP.1 -USA/MO-MSPHL-009597/2024,XDP.1 -USA/MD-CDC-LC1100945/2024,XDP.1 -USA/FL-CDC-QDX92232089/2024,XDP.1 -USA/NY-PRL-240305_81C09/2024,XDP.1 -USA/NE-NM_L374251055/2024,XDP.1 -USA/NE-NM_L374159374/2024,XDP.1 -USA/NE-NM_L374208259/2024,XDP.1 -USA/NE-NM_L374128697/2024,XDP.1 -USA/NE-NM_L374122094/2024,XDP.1 -USA/CO-CDPHE-41709237/2024,XDP.1 -USA/FL-CDC-QDX91247770/2024,XDP.1 -USA/FL-CDC-LC1099816/2024,XDP.1 -USA/FL-CDC-QDX92231878/2024,XDP.1 -USA/FL-CDC-LC1090396/2024,XDP.1 -USA/IVY-G43R71E6/2024,XDP.1 -USA/CA-LACPHL-AY05130/2024,XDP.1 -USA/TX-HMH-M-139650/2024,XDP.1 -USA/NJ-PHEL-V24002930/2024,XDP.1 -USA/CA-CDPH-500134071/2024,XDP.1 -USA/NC-CDC-LC1100034/2024,XDP.1 -USA/CA-HLX-STM-YT6DQNGXE/2024,XDP.1 -USA/PHDL027977/2024,XDP.1 -USA/TX-CDC-QDX92085967/2024,XDP.1 -USA/CA-HLX-STM-PATM594DN/2024,XDP.1 -USA/CA-HLX-STM-C7HXRM7W4/2024,XDP.1 -USA/CA-CDC-QDX92231650/2024,XDP.1 -USA/CA-HLX-STM-NB583BFJX/2024,XDP.1 -USA/CA-HLX-STM-MW894SN5V/2024,XDP.1 -USA/CA-HLX-STM-HVQ5ZERGU/2024,XDP.1 -USA/CA-HLX-STM-KTUJCT92N/2024,XDP.1 -USA/CA-KP000848/2024,XDP.1 -USA/SC-COVID24-0087/2024,XDP.1 -USA/CA-CDPH-500133849/2024,XDP.1 -USA/CA-KP001627/2024,XDP.1 -USA/CA-HLX-STM-GYRPG6NEU/2024,XDP.1 -USA/CA-KP000805/2024,XDP.1 Netherlands/ZH-RIVM-137610/2023,JN.2.2.1 Netherlands/ZH-EMC-8588/2023,JN.2.2.1 Netherlands/ZH-EMC-8585/2023,JN.2.2.1 @@ -2539010,21 +2538917,15 @@ England/CLIMB-CM7Y84S9/2024,JN.1.9.2 USA/NJ-GBW-GKISBBBB32797/2024,LB.1 England/CLIMB-CM7YMWAN/2024,LB.1 USA/NJ-GBW-GKPLAAAA12838/2024,LB.1 -Australia/WA15995/2024,LB.1 England/CLIMB-CM7YEP1U/2024,LB.1 Japan/EIS01-828/2024,LB.1 Pakistan/KMU_PHRL-1235/2024,LB.1 -USA/CA-GBW-GKPLAAAA11152/2024,LB.1 USA/VA-GBW-H20-358-8734/2024,LB.1 USA/VA-GBW-H20-358-1402/2024,LB.1 France/GES-RELAB-IPP04736/2024,LB.1 France/GES-RELAB-IPP04737/2024,LB.1 USA/NY-GBW-H20-360-7299/2024,LB.1 USA/NY-GBW-H20-361-9192/2024,LB.1 -USA/NY-NYULH-19044/2024,LB.1 -USA/NY-PRL-240402_81C02/2024,LB.1 -USA/NY-PRL-240326_81B04/2024,LB.1 -USA/NY-NYULH-19021/2024,LB.1 USA/VA-GBW-H20-346-5030/2024,LB.1 USA/NJ-GBW-H20-360-6201/2024,LB.1 Canada/AB-ABPHL-116302/2024,LB.1 @@ -2542791,9 +2542692,6 @@ USA/FL-CDC-QDX91125613/2024,JN.1 USA/MA-CDC-QDX91125718/2024,JN.1 Scotland/CLIMB-CM7YK79J/2023,JN.1 Netherlands/NH-AUMC-001830/2023,JN.1 -France/PAC-HCL724000059501/2024,JN.1 -USA/TX-HMH-M-138434/2024,JN.1 -USA/NJ-CDC-LC1096712/2024,JN.1 USA/CA-HLX-STM-6K63RT3JX/2024,JN.1 Denmark/DCGC-664468/2023,JN.1 Wales/CLIMB-CM7YFOW3/2024,JN.1 @@ -2542802,8 +2542700,6 @@ Netherlands/NH-RIVM-134621/2023,JN.1 Sweden/AC-23COR007428/2023,JN.1 England/CLIMB-CM7YMGKG/2024,JN.1 England/WSI-331B397D/2024,JN.1 -Canada/ON-KHS-09308-v1/2023,JN.1 -Canada/AB-ABPHL-116095/2024,JN.1 Spain/TO-HUT-72105144/2024,JN.1 England/CLIMB-CM7YRQNE/2024,JN.1 USA/LA-EVTL20839/2023,JN.1 @@ -2542850,8 +2542746,6 @@ Canada/AB-ABPHL-110726/2023,JN.1 Spain/GA-33343912/2023,JN.1 Wales/CLIMB-CM7YEHBI/2024,JN.1 USA/CA-HLX-STM-7MHBP37H5/2023,JN.1 -England/CLIMB-CM7YFM3K/2024,JN.1 -Ireland/WD-NVRL-GIRL00005081/2024,JN.1 Finland/THL-00793/2023,JN.1 Germany/TH-RKI-I-1142124/2023,JN.1 Finland/THL-09644/2023,JN.1 @@ -2543893,12 +2543787,6 @@ USA/NJ-GBW-GKISBBBB66545/2024,LF.1.1 USA/NJ-GBW-GKPLAAAA19064/2024,LF.1.1 Canada/ON-PHL-202407339/2024,LF.1.1 Canada/ON-PHL-202406894/2024,LF.1.1 -Canada/ON-PHL-202407175-v2/2024,LF.1.1 -USA/NJ-GBW-GKISBBBC36673/2024,LF.1.1 -USA/IL-RIPHL_14464_G/2024,LF.1.1 -USA/PA-CDC-LC1103834/2024,LF.1.1 -USA/VA-GBW-H10-013-3627/2024,LF.1.1 -USA/VA-GBW-GKISBBBB20639/2024,LF.1.1 Peru/LIM-INS-48466/2023,JN.1.42.2 Peru/LIM-INS-48465/2023,JN.1.42.2 PER/LIM-UPCH-4046/2023,JN.1.42.2 @@ -2544446,10 +2544334,6 @@ England/CLIMB-CM7YR441/2024,KP.3.1 USA/VA-GBW-H20-316-4103/2024,KP.3.1 USA/VA-GBW-H20-316-4059/2024,KP.3.1 USA/VA-GBW-H10-019-8220/2024,KP.3.1 -England/CLIMB-CM7YRUYU/2024,KP.3.1 -England/CLIMB-CM7YMUTY/2024,KP.3.1 -USA/CA-KP002127/2024,KP.3.1 -USA/CA-KP002405/2024,KP.3.1 Australia/QLD0x01436A/2024,KP.3.1 Australia/QLD0x01431E/2024,KP.3.1 Australia/SA1444009/2024,KP.3.1 @@ -2544494,9 +2544378,6 @@ Canada/QC-L00731817001/2024,KP.3.1 Canada/QC-L00729449001/2024,KP.3.1 Canada/QC-L00731690001/2024,KP.3.1 Spain/PV-HUD-51207203/2024,KP.3.1 -England/CLIMB-CM7YR1M8/2024,KP.3.1 -England/CLIMB-CM7Y8HGX/2024,KP.3.1 -Singapore/R22MQ61/2024,KP.3.1 Australia/SA1450916/2024,KP.3.1 Australia/SA1446091/2024,KP.3.1 Australia/SA1444019/2024,KP.3.1 @@ -2544652,124 +2544533,6 @@ Canada/ON-PHL-202407705/2024,KP.3.1 Canada/ON-PHL-202407456/2024,KP.3.1 Ireland/D-BH-570010240/2024,KP.3.1 England/CLIMB-CM7YJAZC/2024,KP.3.1 -USA/DE-DHSS-B1333408/2024,KP.3.1 -Canada/QC-L00717711001/2024,KP.3.1 -USA/CO-CDPHE-41794964/2024,KP.3.1 -Israel/SMC-7117420/2024,KP.3.1 -Australia/NSW-ICPMR-53685/2024,KP.3.1 -Canada/ON-PHL-202406638/2024,KP.3.1 -Canada/SK-RRPL-709747/2024,KP.3.1 -India/MH_BJCOG_INSACOG_6612/2024,KP.3.1 -USA/CA-CDPH-500135693/2024,KP.3.1 -USA/CA-CDPH-500135862/2024,KP.3.1 -Thailand/NIC_AYA_BOE204/2024,KP.3.1 -Japan/FR027-0014/2024,KP.3.1 -Thailand/NIC_AYA_BOE203/2024,KP.3.1 -Australia/QLD0x0142A1/2024,KP.3.1 -Australia/QLD0x01419E/2024,KP.3.1 -Canada/BC-BCCDC-706047/2024,KP.3.1 -Canada/BC-BCCDC-706062/2024,KP.3.1 -Australia/NSW-ICPMR-53627/2024,KP.3.1 -USA/UT-UPHL-240405344532/2024,KP.3.1 -France/GES-RELAB-IPP04901/2024,KP.3.1 -France/GES-RELAB-IPP04900/2024,KP.3.1 -Canada/BC-BCCDC-709318/2024,KP.3.1 -Canada/BC-BCCDC-708593/2024,KP.3.1 -USA/NY-GBW-GKPLAAAA13422/2024,KP.3.1 -USA/NY-GBW-GKISBBBB67201/2024,KP.3.1 -England/CLIMB-CM7YEIOY/2024,KP.3.1 -Portugal/PT50737/2024,KP.3.1 -Canada/BC-BCCDC-708357/2024,KP.3.1 -USA/UT-UPHL-240318453166/2024,KP.3.1 -USA/CA-GBW-GKPLAAAA19809/2024,KP.3.1 -USA/NJ-GBW-GKISBBBC63995/2024,KP.3.1 -Canada/QC-L00729158001/2024,KP.3.1 -Germany/BW-RKI-I-1143332/2024,KP.3.1 -Canada/QC-L00728856001/2024,KP.3.1 -Canada/QC-L00731529001/2024,KP.3.1 -England/CLIMB-CM7YM1OG/2024,KP.3.1 -England/CLIMB-CM7YKOGU/2024,KP.3.1 -England/CLIMB-CM7YFWS6/2024,KP.3.1 -England/CLIMB-CM7YMISD/2024,KP.3.1 -England/CLIMB-CM7YRKFT/2024,KP.3.1 -England/CLIMB-CM7YE3KX/2024,KP.3.1 -England/CLIMB-CM7YMDY6/2024,KP.3.1 -USA/CT-Yale-25811/2024,KP.3.1 -England/CLIMB-CM7YKJG4/2024,KP.3.1 -Scotland/CLIMB-CM7YGGUN/2024,KP.3.1 -Australia/SA1445590/2024,KP.3.1 -Australia/SA1444018/2024,KP.3.1 -USA/MA-CDC-QDX96100947/2024,KP.3.1 -USA/NY-CDC-QDX95221588/2024,KP.3.1 -England/CLIMB-CM7YGF5R/2024,KP.3.1 -England/CLIMB-CM7YK5IR/2024,KP.3.1 -England/CLIMB-CM7YMSER/2024,KP.3.1 -England/CLIMB-CM7YRQHJ/2024,KP.3.1 -England/CLIMB-CM7YKGPU/2024,KP.3.1 -England/CLIMB-CM7YEGOZ/2024,KP.3.1 -England/CLIMB-CM7YFXWR/2024,KP.3.1 -England/CLIMB-CM7YJ1U3/2024,KP.3.1 -Japan/FR047-0061/2024,KP.3.1 -USA/CA-CDPH-500135636/2024,KP.3.1 -Thailand/NIC_KBI_1012/2024,KP.3.1 -Scotland/CLIMB-CM7YGEQT/2024,KP.3.1 -Australia/NSW-ICPMR-53692/2024,KP.3.1 -Australia/NSW-ICPMR-53693/2024,KP.3.1 -Scotland/CLIMB-CM7Y8M33/2024,KP.3.1 -Scotland/CLIMB-CM7Y8OQO/2024,KP.3.1 -Scotland/CLIMB-CM7YJS9X/2024,KP.3.1 -Scotland/CLIMB-CM7YJIPM/2024,KP.3.1 -England/CLIMB-CM7YJXMK/2024,KP.3.1 -Scotland/CLIMB-CM7YKPZX/2024,KP.3.1 -England/CLIMB-CM7YGW5Q/2024,KP.3.1 -England/CLIMB-CM7YEBEO/2024,KP.3.1 -England/CLIMB-CM7YEOTQ/2024,KP.3.1 -England/CLIMB-CM7YF16S/2024,KP.3.1 -England/CLIMB-CM7YGNII/2024,KP.3.1 -England/CLIMB-CM7YGYCW/2024,KP.3.1 -England/CLIMB-CM7YMA8U/2024,KP.3.1 -England/CLIMB-CM7YRD7Q/2024,KP.3.1 -England/CLIMB-CM7YMXU5/2024,KP.3.1 -England/CLIMB-CM7YMBIK/2024,KP.3.1 -England/CLIMB-CM7YRSI4/2024,KP.3.1 -England/CLIMB-CM7YKDNW/2024,KP.3.1 -England/CLIMB-CM7YMSUI/2024,KP.3.1 -England/CLIMB-CM7YJBZ4/2024,KP.3.1 -England/CLIMB-CM7YK5QU/2024,KP.3.1 -Canada/QC-L00724386001/2024,KP.3.1 -Canada/QC-L00726913001/2024,KP.3.1 -Canada/QC-L00729778001/2024,KP.3.1 -Canada/QC-L00729787001/2024,KP.3.1 -Canada/QC-L00729995001/2024,KP.3.1 -England/CLIMB-CM7YJ41I/2024,KP.3.1 -Canada/QC-L00729783001/2024,KP.3.1 -Canada/QC-L00729784001/2024,KP.3.1 -Canada/QC-L00731274001/2024,KP.3.1 -Canada/QC-L00725106001/2024,KP.3.1 -Canada/QC-L00724776001/2024,KP.3.1 -Canada/QC-L00719925001/2024,KP.3.1 -Canada/ON-PHL-202406443/2024,KP.3.1 -Canada/QC-L00731345001/2024,KP.3.1 -Canada/QC-L00724387001/2024,KP.3.1 -Canada/QC-L00724385001/2024,KP.3.1 -Canada/QC-L00724383001/2024,KP.3.1 -Canada/QC-L00724388001/2024,KP.3.1 -Canada/QC-L00724767001/2024,KP.3.1 -Canada/QC-L00731662001/2024,KP.3.1 -Canada/QC-L00731651001/2024,KP.3.1 -Canada/QC-L00722215001/2024,KP.3.1 -Canada/QC-L00731579001/2024,KP.3.1 -Canada/QC-L00731653001/2024,KP.3.1 -Canada/QC-L00731656001/2024,KP.3.1 -Canada/QC-L00731763001/2024,KP.3.1 -Canada/QC-L00729303001/2024,KP.3.1 -Canada/QC-L00729298001/2024,KP.3.1 -Canada/QC-L00729296001/2024,KP.3.1 -Canada/QC-L00729311001/2024,KP.3.1 -Canada/QC-L00729301001/2024,KP.3.1 -Canada/QC-L00731761001/2024,KP.3.1 -Canada/QC-L00731764001/2024,KP.3.1 -Canada/QC-L00731803001/2024,KP.3.1 Australia/NSW-ICPMR-53572/2024,KP.3 Australia/NSW-ICPMR-53528/2024,KP.3 Canada/BC-BCCDC-709191/2024,KP.3 @@ -2545054,30 +2544817,6 @@ Canada/AB-ABPHL-116433/2024,KP.3.2 Canada/AB-ABPHL-117302/2024,KP.3.2 Canada/AB-ABPHL-117292/2024,KP.3.2 Canada/AB-ABPHL-117291/2024,KP.3.2 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Australia/QLD0x01436B/2024,KP.3.2 Australia/NSW-ICPMR-53561/2024,KP.3.2 Australia/QLD0x0143B5/2024,KP.3.2 Australia/QLD0x0143BE/2024,KP.3.2 -Australia/NSW-ICPMR-53676/2024,KP.3.2 -Australia/NSW-ICPMR-53680/2024,KP.3.2 England/CLIMB-CM7YRZHB/2024,KP.3.2 England/CLIMB-CM7YMUPK/2024,KP.3.2 Australia/SA1390042/2024,KP.3.2 @@ -2545224,113 +2544961,6 @@ Australia/SA1390063/2024,KP.3.2 Canada/NS-NSH-708306/2024,KP.3.2 USA/NJ-GBW-GKISBBBB88493/2024,KP.3.2 Canada/ON-KHS-02128-v1/2024,KP.3.2 -USA/CA-Stanford-181_S40/2024,KP.3.2 -USA/NE-NM_L375258685/2024,KP.3.2 -Australia/WA16008/2024,KP.3.2 -USA/NY-URMC-O4S1N772-1/2024,KP.3.2 -Australia/QLD0x01434E/2024,KP.3.2 -USA/VA-GBW-H20-358-1219/2024,KP.3.2 -Canada/ON-KHS-02156-v1/2024,KP.3.2 -USA/OH-ODH-SC4031687/2024,KP.3.2 -Canada/ON-KHS-02129-v1/2024,KP.3.2 -Canada/ON-KHS-02088-v1/2024,KP.3.2 -Canada/ON-PHL-202407458/2024,KP.3.2 -Canada/ON-PHL-202406862/2024,KP.3.2 -USA/VA-GBW-H10-013-4698/2024,KP.3.2 -Australia/WA15992/2024,KP.3.2 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-Canada/ON-KHS-02087-v1/2024,KP.3.2 -Canada/ON-KHS-02127-v1/2024,KP.3.2 -Canada/ON-PHL-202407735/2024,KP.3.2 -Canada/ON-PHL-202407317/2024,KP.3.2 -Canada/ON-PHL-202407366/2024,KP.3.2 -Canada/ON-PHL-202407520/2024,KP.3.2 -Canada/ON-PHL-202407236-v2/2024,KP.3.2 -Canada/ON-PHL-202407364/2024,KP.3.2 -Canada/ON-PHL-202407372/2024,KP.3.2 -Canada/ON-PHL-202407362/2024,KP.3.2 -Canada/ON-PHL-202407630/2024,KP.3.2 -Canada/ON-PHL-202407369/2024,KP.3.2 -Canada/ON-PHL-202407320/2024,KP.3.2 -Canada/ON-PHL-202407313/2024,KP.3.2 -Canada/ON-PHL-202407315/2024,KP.3.2 -Canada/ON-PHL-202407319/2024,KP.3.2 -Canada/ON-PHL-202407221-v2/2024,KP.3.2 -Canada/ON-PHL-202407210-v2/2024,KP.3.2 -Canada/ON-PHL-202407316/2024,KP.3.2 -Canada/ON-PHL-202407314/2024,KP.3.2 -Canada/ON-PHL-202407318/2024,KP.3.2 -Canada/ON-PHL-202407211-v2/2024,KP.3.2 -Canada/ON-PHL-202407637/2024,KP.3.2 -Canada/ON-PHL-202407499/2024,KP.3.2 -Canada/ON-PHL-202407635/2024,KP.3.2 -Canada/ON-PHL-202407631/2024,KP.3.2 -Canada/ON-PHL-202407638/2024,KP.3.2 -Canada/ON-PHL-202407636/2024,KP.3.2 -Canada/ON-PHL-202407632/2024,KP.3.2 -Canada/ON-PHL-202407627/2024,KP.3.2 -Canada/ON-PHL-202407626/2024,KP.3.2 -Canada/ON-PHL-202407639/2024,KP.3.2 -Canada/ON-PHL-202407633/2024,KP.3.2 -Canada/ON-PHL-202407634/2024,KP.3.2 -Canada/ON-PHL-202407422/2024,KP.3.2 -Canada/ON-PHL-202407504/2024,KP.3.2 -Canada/ON-PHL-202407674/2024,KP.3.2 -Canada/ON-PHL-202407718/2024,KP.3.2 -Canada/ON-PHL-202407495/2024,KP.3.2 SouthKorea/KDCA289586/2024,KP.3.3 SouthKorea/KDCA291431/2024,KP.3.3 SouthKorea/KDCA291712/2024,KP.3.3 @@ -2549299,7 +2548929,6 @@ USA/WA-GBW-GKISBBBC30432/2024,LH.2 USA/WA-GBW-GKPLAAAA23265/2024,LH.2 USA/CA-GBW-GKISBBBB62251/2024,LH.2 USA/CA-GBW-GKPLAAAA14167/2024,LH.2 -England/CLIMB-CM7YJ1ID/2024,KP.1.1.3 Canada/ON-PHL-202406502-v2/2024,KP.1.1.3 Canada/QC-L00724118001/2024,KP.1.1.3 Canada/ON-PHL-202406832/2024,KP.1.1.3 @@ -2550505,12 +2550134,6 @@ Peru/LOR-INS-49398/2024,LF.3 USA/VA-GBW-H10-014-6746/2024,LF.3 USA/VA-GBW-H20-357-1787/2024,LF.3 USA/PR-CVL-023557/2024,LF.3 -USA/CA-KP002359/2024,LF.3 -USA/2024CV0744/2024,LF.3 -USA/FL-GBW-GKPLAAAA23937/2024,LF.3 -USA/CA-KP002357/2024,LF.3 -USA/CA-MCPHL-GBD00272/2024,LF.3 -USA/CA-KP002380/2024,LF.3 SouthKorea/KDCA292979/2024,KP.4.2.2 USA/CA-KP002408/2024,KP.4.2.2 SouthKorea/KDCA292565/2024,KP.4.2.2 @@ -2552572,18 +2552195,6 @@ USA/VA-GBW-H10-017-6407/2024,KP.2.15 Canada/ON-KHS-02307-v1/2024,KP.2.15 Canada/ON-KHS-02280-v1/2024,KP.2.15 Canada/ON-KHS-02272-v1/2024,KP.2.15 -USA/NY-URMC-O3S1N131-1/2024,KR.2 -USA/NY-NYULH-19204/2024,KR.2 -USA/NY-NYULH-19211/2024,KR.2 -USA/NY-PRL-240507_81B02/2024,KR.2 -USA/NY-CDC-LC1104135/2024,KR.2 -USA/NY-CDC-LC1104044/2024,KR.2 -USA/NY-NYULH-19336/2024,KR.2 -USA/NJ-CDC-QDX96017857/2024,KR.2 -USA/NY-NYULH-19209/2024,KR.2 -Canada/ON-PHL-202407165-v2/2024,KR.2 -Canada/ON-PHL-202407166-v2/2024,KR.2 -Canada/ON-PHL-202407190-v2/2024,KR.2 USA/CA-GBW-GKPLAAAA10171/2024,KR.1.1 USA/CA-GBW-GKISBBBB21601/2024,KR.1.1 Canada/BC-BCCDC-712737/2024,KR.1.1 @@ -2553520,3 +2553131,5120 @@ Cameroon/LNSP-011-D013510/2024,JN.1.44.1 Cameroon/LNSP-011-D013460/2024,JN.1.44.1 Cameroon/LNSP-011-D013377/2024,JN.1.44.1 Cameroon/LNSP-011-E078312/2024,JN.1.44.1 +Canada/BC-BCCDC-712895/2024,LB.1.1 +Canada/AB-ABPHL-117368/2024,LB.1.1 +Canada/ON-PHL-202408091/2024,LB.1.1 +Canada/ON-PHL-202408088/2024,LB.1.1 +Canada/ON-PHL-202408137/2024,LB.1.1 +Canada/ON-PHL-202408140/2024,LB.1.1 +Canada/ON-PHL-202407795/2024,LB.1.1 +Canada/AB-ABPHL-117486/2024,LB.1.1 +Canada/AB-ABPHL-117460/2024,LB.1.1 +Canada/ON-PHL-202408278/2024,LB.1.1 +Canada/ON-PHL-202408185/2024,LB.1.1 +Canada/AB-ABPHL-117297/2024,LB.1.1 +Canada/ON-PHL-202408189/2024,LB.1.1 +Canada/BC-BCCDC-711206/2024,LB.1.1 +Canada/AB-ABPHL-117365/2024,LB.1.1 +Canada/ON-PHL-202408075/2024,LB.1.1 +Canada/ON-PHL-202408077/2024,LB.1.1 +Canada/ON-PHL-202408090/2024,LB.1.1 +Canada/ON-PHL-202408142/2024,LB.1.1 +Canada/ON-PHL-202408139/2024,LB.1.1 +Canada/ON-PHL-202408089/2024,LB.1.1 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+SouthKorea/KDCA292947/2024,JN.1.16.3 +SouthKorea/KDCA290163/2024,JN.1.16.3 +Spain/MC-HCUVA-21285387/2024,JN.1.15.1 +Ecuador/NIC-INSPI-46-0324IOVR-C/2024,JN.1.15.1 +Ecuador/NIC-INSPI-30-0224IOVR-C/2024,JN.1.15.1 +Ecuador/GENSBIO-INSPI-105268/2024,JN.1.15.1 +Ecuador/GENSBIO-INSPI-1815-1992/2024,JN.1.15.1 +USA/CT-DPH-1211828001/2024,JN.1.15.1 +Ecuador/GENSBIO-INSPI-105156/2024,JN.1.15.1 +Ecuador/GENSBIO-INSPI-SG-98/2024,JN.1.15.1 +Ecuador/GENSBIO-INSPI-105141/2024,JN.1.15.1 +Canada/BC-BCCDC-712685/2024,JN.1.15.1 +Canada/BC-BCCDC-711018/2024,JN.1.15.1 +Canada/BC-BCCDC-710921/2024,JN.1.15.1 +Canada/BC-BCCDC-711704/2024,JN.1.15.1 +Canada/BC-BCCDC-711633/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28679735/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28670195/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28677241/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28667159/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28677246/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28681348/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28679741/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28696670/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28706253/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28693085/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28679729/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28679881/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28687967/2024,JN.1.15.1 +Switzerland/TI-EOC-42_28669804/2024,JN.1.15.1 +Ecuador/GENSBIO-INSPI-105260/2024,LU.1 +USA/2024CV0810/2024,LU.1 +USA/AZ-ASPHL-0810/2024,LU.1 +Ecuador/GENSBIO-INSPI-1171-1721/2024,LU.1 +Ecuador/GENSBIO-INSPI-105265/2024,LU.1 +Ecuador/GENSBIO-INSPI-105245/2024,LU.1 +Ecuador/GENSBIO-INSPI-105259/2024,LU.1 +USA/NY-PRL-240521_81C03/2024,LU.1 +USA/NY-PRL-240529_81F03/2024,LU.1 +USA/NY-NYULH-19453/2024,LU.1 +Ecuador/NIC-INSPI-435324/2024,LU.1 +Ecuador/NIC-INSPI-0217-5728/2024,LU.1 +Ecuador/NIC-INSPI-435344/2024,LU.1 +Ecuador/NIC-INSPI-0875-10746/2024,LU.1 +Canada/AB-ABPHL-117734/2024,LU.1 +USA/NJ-PHEL-V24005509/2024,LU.1 +Ecuador/NIC-INSPI-0875-10792/2024,LU.1 +Spain/PV-HUB-50921865/2024,LU.1 +Spain/GA-CHUAC-12259/2024,LU.1 +Spain/MD-HULP-072671198/2024,LU.1 +Spain/TO-HUT-72138936/2024,LU.1 +Spain/CT-HUVH-E35135/2024,LU.1 +England/CLIMB-CM7YESQH/2024,LU.1 +England/CLIMB-CM7YGTD4/2024,LU.1 +England/CLIMB-CM7YEICU/2024,LU.1 +England/CLIMB-CM7YJHKY/2024,LU.1 +England/CLIMB-CM7YEUF4/2024,LU.1 +England/CLIMB-CM7YRC43/2024,LU.1 +England/CLIMB-CM7YEUKJ/2024,LU.1 +England/CLIMB-CM7YKOKT/2024,LU.1 +England/CLIMB-CM7YJUTP/2024,LU.1 +England/CLIMB-CM7YMZ9G/2024,LU.1 +England/CLIMB-CM7YFFZO/2024,LU.1 +England/CLIMB-CM7Y81HR/2024,LU.1 +England/CLIMB-CM7YED6P/2024,LU.1 +England/CLIMB-CM7YJ5CJ/2024,LU.1 +England/CLIMB-CM7Y8TOM/2024,LU.1 +England/CLIMB-CM7Y8DK1/2024,LU.1 +England/CLIMB-CM7YFN7B/2024,LU.1 +England/CLIMB-CM7YMPJS/2024,LU.1 +England/CLIMB-CM7YKYY6/2024,LU.1 +England/CLIMB-CM7YEPCC/2024,LU.1 +England/CLIMB-CM7YGGRN/2024,LU.1 +England/CLIMB-CM7YF8R9/2024,LU.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index c4d54a44..75cab56f 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -259,6 +259,12 @@ "LL": "B.1.1.529.2.86.1.1.4.2", "LM": "B.1.1.529.2.86.1.1.25.1", "LN": "B.1.1.529.2.86.1.1.53.1", + "LP": "B.1.1.529.2.86.1.1.11.1.1.1.3", + "LQ": "B.1.1.529.2.86.1.1.18.1", + "LR": "B.1.1.529.2.86.1.1.58.2", + "LS": "B.1.1.529.2.86.1.1.18.5", + "LT": "B.1.1.529.2.86.1.1.1.3", + "LU": "B.1.1.529.2.86.1.1.15.1", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"], @@ -371,6 +377,7 @@ "XDT": ["BA.2.86.4","GK.1"], "XDU": ["XBB.1.16","BA.2.86.1"], "XDV": ["XDE","JN.1","XDE","JN.1"], - "XDW": ["JN.2","XDA"] + "XDW": ["JN.2","XDA"], + "XDY": ["LB.1.2.1","KP.3.2"] } diff --git a/scripts/issue-milestone-collector/README.md b/scripts/issue-milestone-collector/README.md index 35c12ec1..f66436a6 100644 --- a/scripts/issue-milestone-collector/README.md +++ b/scripts/issue-milestone-collector/README.md @@ -298,6 +298,9 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `KP.1` | `B.1.1.529.2.86.1.1.11.1 .1` | [⚑ 419](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/419?closed=1) | [#1364](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1364) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:1086](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1086) | 2nd `KP.1.1` | `B.1.1.529.2.86.1.1.11.1 .1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.1.1.2` | `B.1.1.529.2.86.1.1.11.1 .1.1.2` | [⚑ 473](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/473?closed=1) | [#1541](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1541) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [S:1162](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1162), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:1086](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1086), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`KP.1.1.3` | `B.1.1.529.2.86.1.1.11.1 .1.1.3` | [⚑ 485](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/485?closed=1) | [#1502](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [DelRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DelRT) | 2nd +`LP.1` | `B.1.1.529.2.86.1.1.11.1 .1.1.3.1` | [⚑ 495](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/495?closed=1) | [#1591](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1591) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt) | 2nd +`KP.1.1.4` | `B.1.1.529.2.86.1.1.11.1 .1.1.4` | [⚑ 494](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/494?closed=1) | [#1593](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1593) | [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:214](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A214), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [S:1086](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1086), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.1.2` | `B.1.1.529.2.86.1.1.11.1 .1.2` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `KP.2` | `B.1.1.529.2.86.1.1.11.1 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.2.1` | `B.1.1.529.2.86.1.1.11.1 .2.1` | [⚑ 439](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/439?closed=1) | [#1440](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1440) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Double Nuc mutations](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Double%20Nuc%20mutations), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [s:1201](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1201), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd @@ -314,6 +317,9 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `KP.2.9` | `B.1.1.529.2.86.1.1.11.1 .2.9` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `KP.3` | `B.1.1.529.2.86.1.1.11.1 .3` | [⚑ 434](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/434?closed=1) | [#1410](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1410) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:493](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A493), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104) | 2nd `KP.3.1.1` | `B.1.1.529.2.86.1.1.11.1 .3.1.1` | [⚑ 480](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/480?closed=1) | [#1563](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1563) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`KP.3.1.2` | `B.1.1.529.2.86.1.1.11.1 .3.1.2` | [⚑ 491](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/491?closed=1) | [#1589](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1589) | [S:151](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A151), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`KP.3.1.3` | `B.1.1.529.2.86.1.1.11.1 .3.1.3` | [⚑ 493](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/493?closed=1) | [#1576 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1576) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd +`KP.3.1.4` | `B.1.1.529.2.86.1.1.11.1 .3.1.4` | [⚑ 492](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/492?closed=1) | [#1562](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1562) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Mutations outside spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Mutations%20outside%20spike), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd `KP.3.2.1` | `B.1.1.529.2.86.1.1.11.1 .3.2.1` | [⚑ 487](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/487?closed=1) | [#1556 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1556) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [S:263](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A263) | 2nd `KP.3.3` | `B.1.1.529.2.86.1.1.11.1 .3.3` | [⚑ 475](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/475?closed=1) | [#1531](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1531) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [ORF9b](https://github.com/sars-cov-2-variants/lineage-proposals/labels/ORF9b), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3) | 2nd `KP.4.1` | `B.1.1.529.2.86.1.1.11.1 .4.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd @@ -325,15 +331,22 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `KS.1.1` | `B.1.1.529.2.86.1.1.13.1 .1.1` | [⚑ 482](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/482?closed=1) | [#1565](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1565) | [N Glycan](https://github.com/sars-cov-2-variants/lineage-proposals/labels/N%20Glycan), [S:22](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A22), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59), [S:1087](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1087), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.16` | `B.1.1.529.2.86.1.1.16` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.16.1` | `B.1.1.529.2.86.1.1.16.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`LF.1.1` | `B.1.1.529.2.86.1.1.16.1 .1.1` | [⚑ 474](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/474?closed=1) | [#1448 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1448) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1263](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1263), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LF.1.1` | `B.1.1.529.2.86.1.1.16.1 .1.1` | [⚑ 474](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/474?closed=1) | [#1448](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1448) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1263](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1263), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LF.1.1.1` | `B.1.1.529.2.86.1.1.16.1 .1.1.1` | [⚑ 474](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/474?closed=1) | [#1448](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1448) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1263](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1263), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LF.2` | `B.1.1.529.2.86.1.1.16.1 .2` | [⚑ 485](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/485?closed=1) | [#1502](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1502) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Deletions/Truncations/Frameshifted](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Deletions%2FTruncations%2FFrameshifted), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [DelRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DelRT) | 2nd +`LF.3.1` | `B.1.1.529.2.86.1.1.16.1 .3.1` | [⚑ 490](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/490?closed=1) | [#1558](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1558) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Double Nuc mutations](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Double%20Nuc%20mutations), [S:445](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A445), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT), [s:1143](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1143), [S:745](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A745) | 2nd `JN.1.16.2` | `B.1.1.529.2.86.1.1.16.2` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LA.1` | `B.1.1.529.2.86.1.1.16.2 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LA.2` | `B.1.1.529.2.86.1.1.16.2 .2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.18` | `B.1.1.529.2.86.1.1.18` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.18.1` | `B.1.1.529.2.86.1.1.18.1` | [⚑ 431](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/431?closed=1) | [#1414](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1414) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:250](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A250) | 2nd +`LQ.1` | `B.1.1.529.2.86.1.1.18.1 .1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LQ.1.1` | `B.1.1.529.2.86.1.1.18.1 .1.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LQ.2` | `B.1.1.529.2.86.1.1.18.1 .2` | [⚑ 431](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/431?closed=1) | [#1414](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1414) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:250](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A250) | 2nd `JN.1.18.2` | `B.1.1.529.2.86.1.1.18.2` | [⚑ 441](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/441?closed=1) | [#1441](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1441) | [Convergent evolution](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Convergent%20evolution), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59) | 2nd `JN.1.18.3` | `B.1.1.529.2.86.1.1.18.3` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.18.4` | `B.1.1.529.2.86.1.1.18.4` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.18.5` | `B.1.1.529.2.86.1.1.18.5` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.2` | `B.1.1.529.2.86.1.1.2` | [⚑ 267](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/267?closed=1) | [#1087](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1087) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.2.1` | `B.1.1.529.2.86.1.1.2.1` | [⚑ 409](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/409?closed=1) | [#1322](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1322) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:1229](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1229), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1101](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1101) | 2nd `JN.1.21` | `B.1.1.529.2.86.1.1.21` | [⚑ 415](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/415?closed=1) | [#1162](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1162) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1058](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1058) | 2nd @@ -370,6 +383,7 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.4.6` | `B.1.1.529.2.86.1.1.4.6` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `LE.1` | `B.1.1.529.2.86.1.1.4.7 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `LE.1.1` | `B.1.1.529.2.86.1.1.4.7 .1.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.4.8` | `B.1.1.529.2.86.1.1.4.8` | [⚑ 496](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/496?closed=1) | [#1495](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1495) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:60](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A60) | 2nd `JN.1.40` | `B.1.1.529.2.86.1.1.40` | [⚑ 442](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/442?closed=1) | [#1451](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1451) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:31](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A31), [S:58](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A58) | 2nd `JN.1.41` | `B.1.1.529.2.86.1.1.41` | [⚑ 444](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/444?closed=1) | [#1256](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1256) | [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:1252](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1252) | 2nd `JN.1.42.1` | `B.1.1.529.2.86.1.1.42.1` | [⚑ 451](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/451?closed=1) | [#1474](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1474) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:59](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A59) | 2nd @@ -382,19 +396,23 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `JN.1.5` | `B.1.1.529.2.86.1.1.5` | [⚑ 381](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/381?closed=1) | [#1143](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1143) | [High local prevalence](https://github.com/sars-cov-2-variants/lineage-proposals/labels/High%20local%20prevalence), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [Double Nuc mutations](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Double%20Nuc%20mutations), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [NSP13](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP13) | 2nd `JN.1.55.1` | `B.1.1.529.2.86.1.1.55.1` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.55.2` | `B.1.1.529.2.86.1.1.55.2` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.57.1` | `B.1.1.529.2.86.1.1.57.1` | [⚑ 497](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/497?closed=1) | [#1460](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1460) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:60](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A60) | 2nd `JN.1.6.1` | `B.1.1.529.2.86.1.1.6.1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`JN.1.62` | `B.1.1.529.2.86.1.1.62` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.7` | `B.1.1.529.2.86.1.1.7` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.7.1` | `B.1.1.529.2.86.1.1.7.1` | [⚑ 420](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/420?closed=1) | [#1371](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1371) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.7.3` | `B.1.1.529.2.86.1.1.7.3` | [⚑ 452](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/452?closed=1) | [#1343 🔴](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1343) | [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [S:680](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A680) | 2nd `JN.1.7.4` | `B.1.1.529.2.86.1.1.7.4` | [⚑ 424](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/424?closed=1) | [#1253 🟠](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253) | [S:456](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A456), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd -`JN.1.7.5` | `B.1.1.529.2.86.1.1.7.5` | [⚑ 483](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/483?closed=1) | [#1374](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1374) | [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [Omicron defining mutated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Omicron%20defining%20mutated), [NSP5](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP5) | 2nd -`LK.1` | `B.1.1.529.2.86.1.1.7.5 .1` | [⚑ 483](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/483?closed=1) | [#1374](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1374) | [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [Omicron defining mutated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Omicron%20defining%20mutated), [NSP5](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP5) | 2nd +`JN.1.7.5` | `B.1.1.529.2.86.1.1.7.5` | [⚑ 483](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/483?closed=1) | [#1374](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1374) | [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [Lineage defining mutation further mutated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Lineage%20defining%20mutation%20further%20mutated), [NSP5](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP5) | 2nd +`LK.1` | `B.1.1.529.2.86.1.1.7.5 .1` | [⚑ 483](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/483?closed=1) | [#1374](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1374) | [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [Lineage defining mutation further mutated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Lineage%20defining%20mutation%20further%20mutated), [NSP5](https://github.com/sars-cov-2-variants/lineage-proposals/labels/NSP5) | 2nd `JN.1.8.1` | `B.1.1.529.2.86.1.1.8.1` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.8.2` | `B.1.1.529.2.86.1.1.8.2` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd `JN.1.9` | `B.1.1.529.2.86.1.1.9` | [⚑ 833](https://github.com/cov-lineages/pango-designation/milestone/833?closed=1) | [#2410](https://github.com/cov-lineages/pango-designation/issues/2410) | | main `JN.1.9` | `B.1.1.529.2.86.1.1.9` | [⚑ 387](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/387?closed=1) | [#1096](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1096) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:183](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A183), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `JN.1.9.1` | `B.1.1.529.2.86.1.1.9.1` | [⚑ 389](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/389?closed=1) | [#1097](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097) | [To be proposed](https://github.com/sars-cov-2-variants/lineage-proposals/labels/To%20be%20proposed), [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:572](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A572), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1) | 2nd `LB.1` | `B.1.1.529.2.86.1.1.9.2 .1` | [⚑ 425](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/425?closed=1) | [#1089](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1089) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [JN.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1), [FLiRT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/FLiRT) | 2nd +`LB.1.2.1` | `B.1.1.529.2.86.1.1.9.2 .1.2.1` | [⚑ 498](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/498?closed=1) | [#1559](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1559) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd +`LB.1.5` | `B.1.1.529.2.86.1.1.9.2 .1.5` | [⚑ 489](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/489?closed=1) | [#1557](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1557) | [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [2nuc mutation](https://github.com/sars-cov-2-variants/lineage-proposals/labels/2nuc%20mutation), [s:1143](https://github.com/sars-cov-2-variants/lineage-proposals/labels/s%3A1143), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd `JN.10` | `B.1.1.529.2.86.1.10` | [⚑ 234](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/234?closed=1) | [#954](https://github.com/sars-cov-2-variants/lineage-proposals/issues/954) | [Multiple lineages](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Multiple%20lineages), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [S:475](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A475), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86) | 2nd `JN.11` | `B.1.1.529.2.86.1.11` | [⚑ 404](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/404?closed=1) | [#1303](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1303) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd `JN.11.1` | `B.1.1.529.2.86.1.11.1` | [⚑ 404](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/404?closed=1) | [#1303](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1303) | [Emerged in an undersampled area](https://github.com/sars-cov-2-variants/lineage-proposals/labels/Emerged%20in%20an%20undersampled%20area), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:455](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A455), [partially designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/partially%20designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [JN.1 Spike](https://github.com/sars-cov-2-variants/lineage-proposals/labels/JN%2E1%20Spike) | 2nd @@ -1466,6 +1484,7 @@ PANGO | UNALIASED PANGO | MILESTONE | ISSUE | LABELS | REPO `XDT` | `XDT` | [⚑ 416](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/416?closed=1) | [#1183](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1183) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [S:174](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A174), [XDT](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDT) | 2nd `XDU` | `XDU` | [⚑ 448](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/448?closed=1) | [#1084](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1084) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [BA.2.86](https://github.com/sars-cov-2-variants/lineage-proposals/labels/BA%2E2%2E86), [XDU](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDU) | 2nd `XDW` | `XDW` | [⚑ 458](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/458?closed=1) | [#1471](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1471) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [designated](https://github.com/sars-cov-2-variants/lineage-proposals/labels/designated), [S:346](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A346), [recombinant squared](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant%20squared), [S:701](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A701), [XDW](https://github.com/sars-cov-2-variants/lineage-proposals/labels/XDW) | 2nd +`XDY` | `XDY` | [⚑ 498](https://github.com/sars-cov-2-variants/lineage-proposals/milestone/498?closed=1) | [#1559](https://github.com/sars-cov-2-variants/lineage-proposals/issues/1559) | [recombinant](https://github.com/sars-cov-2-variants/lineage-proposals/labels/recombinant), [S:190](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A190), [S:1104](https://github.com/sars-cov-2-variants/lineage-proposals/labels/S%3A1104), [KP.2](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E2), [DeFlirt](https://github.com/sars-cov-2-variants/lineage-proposals/labels/DeFlirt), [KP.3](https://github.com/sars-cov-2-variants/lineage-proposals/labels/KP%2E3), [LB.1](https://github.com/sars-cov-2-variants/lineage-proposals/labels/LB%2E1) | 2nd `XE` | `XE` | [⚑ 220](https://github.com/cov-lineages/pango-designation/milestone/220?closed=1) | [#454](https://github.com/cov-lineages/pango-designation/issues/454) | https://github.com/cov-lineages/pango-designation/labels/designated | main `XF` | `XF` | [⚑ 221](https://github.com/cov-lineages/pango-designation/milestone/221?closed=1) | [#445](https://github.com/cov-lineages/pango-designation/issues/445) | https://github.com/cov-lineages/pango-designation/labels/designated | main `XG` | `XG` | [⚑ 223](https://github.com/cov-lineages/pango-designation/milestone/223?closed=1) | [#447](https://github.com/cov-lineages/pango-designation/issues/447) | https://github.com/cov-lineages/pango-designation/labels/designated | main diff --git a/scripts/issue-milestone-collector/data/mappings.json b/scripts/issue-milestone-collector/data/mappings.json index f5a3f558..51c8071f 100644 --- a/scripts/issue-milestone-collector/data/mappings.json +++ b/scripts/issue-milestone-collector/data/mappings.json @@ -3557,6 +3557,42 @@ "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.2" } ], + "B.1.1.529.2.86.1.1.11.1.1.1.3": [ + { + "pango": "KP.1.1.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 485, + "issue": 1502, + "labels": "To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.3" + } + ], + "B.1.1.529.2.86.1.1.11.1.1.1.3.1": [ + { + "pango": "LP.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 495, + "issue": 1591, + "labels": "designated, S:1229, DeFlirt", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.3.1" + } + ], + "B.1.1.529.2.86.1.1.11.1.1.1.4": [ + { + "pango": "KP.1.1.4", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 494, + "issue": 1593, + "labels": "High local prevalence, designated, S:214, S:1104, S:1086, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.1.1.4" + } + ], "B.1.1.529.2.86.1.1.11.1.1.2": [ { "pango": "KP.1.2", @@ -3749,6 +3785,42 @@ "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.1" } ], + "B.1.1.529.2.86.1.1.11.1.3.1.2": [ + { + "pango": "KP.3.1.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 491, + "issue": 1589, + "labels": "S:151, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.2" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.3": [ + { + "pango": "KP.3.1.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 493, + "issue": 1576, + "labels": "Multiple lineages, designated, S:31, KP.3", + "state": "OPEN", + "reason": null, + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.3" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.4": [ + { + "pango": "KP.3.1.4", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 492, + "issue": 1562, + "labels": "To be proposed, Mutations outside spike, designated, KP.3", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.11.1.3.1.4" + } + ], "B.1.1.529.2.86.1.1.11.1.3.2.1": [ { "pango": "KP.3.2.1", @@ -3888,11 +3960,47 @@ "milestone": 474, "issue": 1448, "labels": "To be proposed, Emerged in an undersampled area, designated, S:1263, FLiRT", - "state": "OPEN", - "reason": null, + "state": "CLOSED", + "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.16.1.1.1" } ], + "B.1.1.529.2.86.1.1.16.1.1.1.1": [ + { + "pango": "LF.1.1.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 474, + "issue": 1448, + "labels": "To be proposed, Emerged in an undersampled area, designated, S:1263, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.16.1.1.1.1" + } + ], + "B.1.1.529.2.86.1.1.16.1.2": [ + { + "pango": "LF.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 485, + "issue": 1502, + "labels": "To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.16.1.2" + } + ], + "B.1.1.529.2.86.1.1.16.1.3.1": [ + { + "pango": "LF.3.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 490, + "issue": 1558, + "labels": "designated, Double Nuc mutations, S:445, FLiRT, s:1143, S:745", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.16.1.3.1" + } + ], "B.1.1.529.2.86.1.1.16.2": [ { "pango": "JN.1.16.2", @@ -3953,6 +4061,42 @@ "unaliased": "B.1.1.529.2.86.1.1.18.1" } ], + "B.1.1.529.2.86.1.1.18.1.1": [ + { + "pango": "LQ.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null, + "unaliased": "B.1.1.529.2.86.1.1.18.1.1" + } + ], + "B.1.1.529.2.86.1.1.18.1.1.1": [ + { + "pango": "LQ.1.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null, + "unaliased": "B.1.1.529.2.86.1.1.18.1.1.1" + } + ], + "B.1.1.529.2.86.1.1.18.1.2": [ + { + "pango": "LQ.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 431, + "issue": 1414, + "labels": "designated, S:346, JN.1, S:250", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.18.1.2" + } + ], "B.1.1.529.2.86.1.1.18.2": [ { "pango": "JN.1.18.2", @@ -3989,6 +4133,18 @@ "unaliased": "B.1.1.529.2.86.1.1.18.4" } ], + "B.1.1.529.2.86.1.1.18.5": [ + { + "pango": "JN.1.18.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 425, + "issue": 1089, + "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.18.5" + } + ], "B.1.1.529.2.86.1.1.2": [ { "pango": "JN.1.2", @@ -4419,6 +4575,18 @@ "unaliased": "B.1.1.529.2.86.1.1.4.7.1.1" } ], + "B.1.1.529.2.86.1.1.4.8": [ + { + "pango": "JN.1.4.8", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 496, + "issue": 1495, + "labels": "To be proposed, designated, S:60", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.4.8" + } + ], "B.1.1.529.2.86.1.1.40": [ { "pango": "JN.1.40", @@ -4561,6 +4729,18 @@ "unaliased": "B.1.1.529.2.86.1.1.55.2" } ], + "B.1.1.529.2.86.1.1.57.1": [ + { + "pango": "JN.1.57.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 497, + "issue": 1460, + "labels": "designated, S:60", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.57.1" + } + ], "B.1.1.529.2.86.1.1.6.1": [ { "pango": "JN.1.6.1", @@ -4573,6 +4753,18 @@ "unaliased": "B.1.1.529.2.86.1.1.6.1" } ], + "B.1.1.529.2.86.1.1.62": [ + { + "pango": "JN.1.62", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null, + "unaliased": "B.1.1.529.2.86.1.1.62" + } + ], "B.1.1.529.2.86.1.1.7": [ { "pango": "JN.1.7", @@ -4627,7 +4819,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 483, "issue": 1374, - "labels": "S:572, JN.1, Omicron defining mutated, NSP5", + "labels": "S:572, JN.1, Lineage defining mutation further mutated, NSP5", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.7.5" @@ -4639,7 +4831,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 483, "issue": 1374, - "labels": "S:572, JN.1, Omicron defining mutated, NSP5", + "labels": "S:572, JN.1, Lineage defining mutation further mutated, NSP5", "state": "CLOSED", "reason": "COMPLETED", "unaliased": "B.1.1.529.2.86.1.1.7.5.1" @@ -4715,6 +4907,30 @@ "unaliased": "B.1.1.529.2.86.1.1.9.2.1" } ], + "B.1.1.529.2.86.1.1.9.2.1.2.1": [ + { + "pango": "LB.1.2.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 498, + "issue": 1559, + "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.9.2.1.2.1" + } + ], + "B.1.1.529.2.86.1.1.9.2.1.5": [ + { + "pango": "LB.1.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 489, + "issue": 1557, + "labels": "designated, 2nuc mutation, s:1143, DeFlirt, LB.1", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "B.1.1.529.2.86.1.1.9.2.1.5" + } + ], "B.1.1.529.2.86.1.10": [ { "pango": "JN.10", @@ -17455,6 +17671,18 @@ "unaliased": "XDW" } ], + "XDY": [ + { + "pango": "XDY", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 498, + "issue": 1559, + "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "state": "CLOSED", + "reason": "COMPLETED", + "unaliased": "XDY" + } + ], "XE": [ { "pango": "XE", diff --git a/scripts/issue-milestone-collector/data/mappings.tsv b/scripts/issue-milestone-collector/data/mappings.tsv index 3476a98c..e3142a3f 100644 --- a/scripts/issue-milestone-collector/data/mappings.tsv +++ b/scripts/issue-milestone-collector/data/mappings.tsv @@ -297,6 +297,9 @@ JN.1.11.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineage KP.1 sars-cov-2-variants/lineage-proposals 419 1364 S:456, Emerged in an undersampled area, designated, JN.1, S:1104, S:1086 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1 KP.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1 KP.1.1.2 sars-cov-2-variants/lineage-proposals 473 1541 To be proposed, S:1162, S:1104, S:1086, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.2 +KP.1.1.3 sars-cov-2-variants/lineage-proposals 485 1502 To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.3 +LP.1 sars-cov-2-variants/lineage-proposals 495 1591 designated, S:1229, DeFlirt CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.3.1 +KP.1.1.4 sars-cov-2-variants/lineage-proposals 494 1593 High local prevalence, designated, S:214, S:1104, S:1086, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.1.4 KP.1.2 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.1.2 KP.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2 KP.2.1 sars-cov-2-variants/lineage-proposals 439 1440 Emerged in an undersampled area, designated, Double Nuc mutations, S:1104, s:1201, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.1 @@ -313,6 +316,9 @@ KP.2.8 sars-cov-2-variants/lineage-proposals 468 1546 designated, S:60, KP.2 CLO KP.2.9 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.2.9 KP.3 sars-cov-2-variants/lineage-proposals 434 1410 S:456, Emerged in an undersampled area, designated, S:493, JN.1, S:1104 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3 KP.3.1.1 sars-cov-2-variants/lineage-proposals 480 1563 To be proposed, Deletions/Truncations/Frameshifted, designated, S:31, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.1 +KP.3.1.2 sars-cov-2-variants/lineage-proposals 491 1589 S:151, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.2 +KP.3.1.3 sars-cov-2-variants/lineage-proposals 493 1576 Multiple lineages, designated, S:31, KP.3 OPEN B.1.1.529.2.86.1.1.11.1.3.1.3 +KP.3.1.4 sars-cov-2-variants/lineage-proposals 492 1562 To be proposed, Mutations outside spike, designated, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.1.4 KP.3.2.1 sars-cov-2-variants/lineage-proposals 487 1556 designated, S:31, KP.3, S:263 OPEN B.1.1.529.2.86.1.1.11.1.3.2.1 KP.3.3 sars-cov-2-variants/lineage-proposals 475 1531 To be proposed, ORF9b, KP.3 CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.3.3 KP.4.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.11.1.4.1 @@ -324,15 +330,22 @@ KS.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, de KS.1.1 sars-cov-2-variants/lineage-proposals 482 1565 N Glycan, S:22, S:59, S:1087, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.13.1.1.1 JN.1.16 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.16 JN.1.16.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1 -LF.1.1 sars-cov-2-variants/lineage-proposals 474 1448 To be proposed, Emerged in an undersampled area, designated, S:1263, FLiRT OPEN B.1.1.529.2.86.1.1.16.1.1.1 +LF.1.1 sars-cov-2-variants/lineage-proposals 474 1448 To be proposed, Emerged in an undersampled area, designated, S:1263, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.1.1 +LF.1.1.1 sars-cov-2-variants/lineage-proposals 474 1448 To be proposed, Emerged in an undersampled area, designated, S:1263, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.1.1.1 +LF.2 sars-cov-2-variants/lineage-proposals 485 1502 To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.2 +LF.3.1 sars-cov-2-variants/lineage-proposals 490 1558 designated, Double Nuc mutations, S:445, FLiRT, s:1143, S:745 CLOSED COMPLETED B.1.1.529.2.86.1.1.16.1.3.1 JN.1.16.2 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.16.2 LA.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.16.2.1 LA.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.16.2.2 JN.1.18 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18 JN.1.18.1 sars-cov-2-variants/lineage-proposals 431 1414 designated, S:346, JN.1, S:250 CLOSED COMPLETED B.1.1.529.2.86.1.1.18.1 +LQ.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.1.1 +LQ.1.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.1.1.1 +LQ.2 sars-cov-2-variants/lineage-proposals 431 1414 designated, S:346, JN.1, S:250 CLOSED COMPLETED B.1.1.529.2.86.1.1.18.1.2 JN.1.18.2 sars-cov-2-variants/lineage-proposals 441 1441 Convergent evolution, designated, S:346, S:59 CLOSED COMPLETED B.1.1.529.2.86.1.1.18.2 JN.1.18.3 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.3 JN.1.18.4 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.18.4 +JN.1.18.5 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.18.5 JN.1.2 sars-cov-2-variants/lineage-proposals 267 1087 designated, BA.2.86, S:1229, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.2 JN.1.2.1 sars-cov-2-variants/lineage-proposals 409 1322 designated, S:1229, JN.1, S:1101 CLOSED COMPLETED B.1.1.529.2.86.1.1.2.1 JN.1.21 sars-cov-2-variants/lineage-proposals 415 1162 To be proposed, Multiple lineages, designated, BA.2.86, JN.1, S:1058 CLOSED COMPLETED B.1.1.529.2.86.1.1.21 @@ -369,6 +382,7 @@ KV.2 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lin JN.1.4.6 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.6 LE.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1 LE.1.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.4.7.1.1 +JN.1.4.8 sars-cov-2-variants/lineage-proposals 496 1495 To be proposed, designated, S:60 CLOSED COMPLETED B.1.1.529.2.86.1.1.4.8 JN.1.40 sars-cov-2-variants/lineage-proposals 442 1451 Emerged in an undersampled area, designated, S:31, S:58 CLOSED COMPLETED B.1.1.529.2.86.1.1.40 JN.1.41 sars-cov-2-variants/lineage-proposals 444 1256 S:455, BA.2.86, JN.1, S:1252 CLOSED COMPLETED B.1.1.529.2.86.1.1.41 JN.1.42.1 sars-cov-2-variants/lineage-proposals 451 1474 designated, S:59 CLOSED COMPLETED B.1.1.529.2.86.1.1.42.1 @@ -381,19 +395,23 @@ JN.1.5 cov-lineages/pango-designation 829 2419 CLOSED COMPLETED B.1.1.529.2.86. JN.1.5 sars-cov-2-variants/lineage-proposals 381 1143 High local prevalence, designated, Double Nuc mutations, BA.2.86, JN.1, NSP13 CLOSED COMPLETED B.1.1.529.2.86.1.1.5 JN.1.55.1 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.55.1 JN.1.55.2 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.55.2 +JN.1.57.1 sars-cov-2-variants/lineage-proposals 497 1460 designated, S:60 CLOSED COMPLETED B.1.1.529.2.86.1.1.57.1 JN.1.6.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.6.1 +JN.1.62 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.62 JN.1.7 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.7 JN.1.7.1 sars-cov-2-variants/lineage-proposals 420 1371 designated, S:346, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.1 JN.1.7.3 sars-cov-2-variants/lineage-proposals 452 1343 S:346, S:455, S:572, JN.1, S:680 CLOSED NOT_PLANNED B.1.1.529.2.86.1.1.7.3 JN.1.7.4 sars-cov-2-variants/lineage-proposals 424 1253 S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT OPEN B.1.1.529.2.86.1.1.7.4 -JN.1.7.5 sars-cov-2-variants/lineage-proposals 483 1374 S:572, JN.1, Omicron defining mutated, NSP5 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.5 -LK.1 sars-cov-2-variants/lineage-proposals 483 1374 S:572, JN.1, Omicron defining mutated, NSP5 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.5.1 +JN.1.7.5 sars-cov-2-variants/lineage-proposals 483 1374 S:572, JN.1, Lineage defining mutation further mutated, NSP5 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.5 +LK.1 sars-cov-2-variants/lineage-proposals 483 1374 S:572, JN.1, Lineage defining mutation further mutated, NSP5 CLOSED COMPLETED B.1.1.529.2.86.1.1.7.5.1 JN.1.8.1 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.8.1 JN.1.8.2 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.8.2 JN.1.9 cov-lineages/pango-designation 833 2410 CLOSED COMPLETED B.1.1.529.2.86.1.1.9 JN.1.9 sars-cov-2-variants/lineage-proposals 387 1096 designated, BA.2.86, S:183, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9 JN.1.9.1 sars-cov-2-variants/lineage-proposals 389 1097 To be proposed, Multiple lineages, partially designated, BA.2.86, S:572, JN.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.1 LB.1 sars-cov-2-variants/lineage-proposals 425 1089 Multiple lineages, S:346, partially designated, JN.1, FLiRT CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1 +LB.1.2.1 sars-cov-2-variants/lineage-proposals 498 1559 recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.2.1 +LB.1.5 sars-cov-2-variants/lineage-proposals 489 1557 designated, 2nuc mutation, s:1143, DeFlirt, LB.1 CLOSED COMPLETED B.1.1.529.2.86.1.1.9.2.1.5 JN.10 sars-cov-2-variants/lineage-proposals 234 954 Multiple lineages, designated, partially designated, S:475, BA.2.86 CLOSED COMPLETED B.1.1.529.2.86.1.10 JN.11 sars-cov-2-variants/lineage-proposals 404 1303 Emerged in an undersampled area, designated, S:455, partially designated, BA.2.86, S:1104, JN.1 Spike CLOSED COMPLETED B.1.1.529.2.86.1.11 JN.11.1 sars-cov-2-variants/lineage-proposals 404 1303 Emerged in an undersampled area, designated, S:455, partially designated, BA.2.86, S:1104, JN.1 Spike CLOSED COMPLETED B.1.1.529.2.86.1.11.1 @@ -1465,6 +1483,7 @@ XDT cov-lineages/pango-designation 840 2485 CLOSED COMPLETED XDT XDT sars-cov-2-variants/lineage-proposals 416 1183 recombinant, designated, BA.2.86, S:174, XDT CLOSED COMPLETED XDT XDU sars-cov-2-variants/lineage-proposals 448 1084 recombinant, designated, BA.2.86, XDU CLOSED COMPLETED XDU XDW sars-cov-2-variants/lineage-proposals 458 1471 recombinant, designated, S:346, recombinant squared, S:701, XDW CLOSED COMPLETED XDW +XDY sars-cov-2-variants/lineage-proposals 498 1559 recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1 CLOSED COMPLETED XDY XE cov-lineages/pango-designation 220 454 designated CLOSED COMPLETED XE XF cov-lineages/pango-designation 221 445 designated CLOSED COMPLETED XF XG cov-lineages/pango-designation 223 447 designated CLOSED COMPLETED XG diff --git a/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json b/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json index f7af1edf..4b853851 100644 --- a/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json +++ b/scripts/issue-milestone-collector/github-artifacts/mappings/sars-cov-2-variants_lineage-proposals.json @@ -5257,6 +5257,39 @@ "reason": null } ], + "B.1.1.529.2.86.1.1.18.1.1": [ + { + "pango": "LQ.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null + } + ], + "B.1.1.529.2.86.1.1.18.1.1.1": [ + { + "pango": "LQ.1.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null + } + ], + "B.1.1.529.2.86.1.1.62": [ + { + "pango": "JN.1.62", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 424, + "issue": 1253, + "labels": "S:456, Multiple lineages, designated, S:455, partially designated, JN.1, FLiRT", + "state": "OPEN", + "reason": null + } + ], "B.1.1.529.2.86.1.1.1.3": [ { "pango": "JN.1.1.3", @@ -5521,6 +5554,17 @@ "reason": "COMPLETED" } ], + "B.1.1.529.2.86.1.1.18.5": [ + { + "pango": "JN.1.18.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 425, + "issue": 1089, + "labels": "Multiple lineages, S:346, partially designated, JN.1, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], "B.1.1.529.2.86.3.2": [ { "pango": "JQ.2", @@ -5598,6 +5642,17 @@ "reason": "COMPLETED" } ], + "B.1.1.529.2.86.1.1.18.1.2": [ + { + "pango": "LQ.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 431, + "issue": 1414, + "labels": "designated, S:346, JN.1, S:250", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], "B.1.1.529.2.86.1.1.31": [ { "pango": "JN.1.31", @@ -6045,8 +6100,19 @@ "milestone": 474, "issue": 1448, "labels": "To be proposed, Emerged in an undersampled area, designated, S:1263, FLiRT", - "state": "OPEN", - "reason": null + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.16.1.1.1.1": [ + { + "pango": "LF.1.1.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 474, + "issue": 1448, + "labels": "To be proposed, Emerged in an undersampled area, designated, S:1263, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED" } ], "B.1.1.529.2.86.1.1.11.1.3.3": [ @@ -6154,7 +6220,7 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 483, "issue": 1374, - "labels": "S:572, JN.1, Omicron defining mutated, NSP5", + "labels": "S:572, JN.1, Lineage defining mutation further mutated, NSP5", "state": "CLOSED", "reason": "COMPLETED" } @@ -6165,7 +6231,29 @@ "repo": "sars-cov-2-variants/lineage-proposals", "milestone": 483, "issue": 1374, - "labels": "S:572, JN.1, Omicron defining mutated, NSP5", + "labels": "S:572, JN.1, Lineage defining mutation further mutated, NSP5", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.16.1.2": [ + { + "pango": "LF.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 485, + "issue": 1502, + "labels": "To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.1.1.3": [ + { + "pango": "KP.1.1.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 485, + "issue": 1502, + "labels": "To be proposed, Deletions/Truncations/Frameshifted, Multiple lineages, S:346, S:31, DeFlirt, DelRT", "state": "CLOSED", "reason": "COMPLETED" } @@ -6202,5 +6290,126 @@ "state": "CLOSED", "reason": "COMPLETED" } + ], + "B.1.1.529.2.86.1.1.9.2.1.5": [ + { + "pango": "LB.1.5", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 489, + "issue": 1557, + "labels": "designated, 2nuc mutation, s:1143, DeFlirt, LB.1", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.16.1.3.1": [ + { + "pango": "LF.3.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 490, + "issue": 1558, + "labels": "designated, Double Nuc mutations, S:445, FLiRT, s:1143, S:745", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.2": [ + { + "pango": "KP.3.1.2", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 491, + "issue": 1589, + "labels": "S:151, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.4": [ + { + "pango": "KP.3.1.4", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 492, + "issue": 1562, + "labels": "To be proposed, Mutations outside spike, designated, KP.3", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.3.1.3": [ + { + "pango": "KP.3.1.3", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 493, + "issue": 1576, + "labels": "Multiple lineages, designated, S:31, KP.3", + "state": "OPEN", + "reason": null + } + ], + "B.1.1.529.2.86.1.1.11.1.1.1.4": [ + { + "pango": "KP.1.1.4", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 494, + "issue": 1593, + "labels": "High local prevalence, designated, S:214, S:1104, S:1086, FLiRT", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.11.1.1.1.3.1": [ + { + "pango": "LP.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 495, + "issue": 1591, + "labels": "designated, S:1229, DeFlirt", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.4.8": [ + { + "pango": "JN.1.4.8", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 496, + "issue": 1495, + "labels": "To be proposed, designated, S:60", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.57.1": [ + { + "pango": "JN.1.57.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 497, + "issue": 1460, + "labels": "designated, S:60", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "B.1.1.529.2.86.1.1.9.2.1.2.1": [ + { + "pango": "LB.1.2.1", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 498, + "issue": 1559, + "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "state": "CLOSED", + "reason": "COMPLETED" + } + ], + "XDY": [ + { + "pango": "XDY", + "repo": "sars-cov-2-variants/lineage-proposals", + "milestone": 498, + "issue": 1559, + "labels": "recombinant, S:190, S:1104, KP.2, DeFlirt, KP.3, LB.1", + "state": "CLOSED", + "reason": "COMPLETED" + } ] }