From 4699799c576e7cf7c0a37d391ecba66bc68a4ac4 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Mon, 1 Jul 2024 16:36:15 +0200 Subject: [PATCH] Designate LU.2 (S:R346T, after T20865C), designate extra JN.1.15.1 (S:F456L, ORF3a:R122S, Ecuador) --- lineage_notes.txt | 3 +- lineages.csv | 154 +++++++++++++++++++++++++++++++++------------- 2 files changed, 113 insertions(+), 44 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 9df5f3cd..d3574262 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1196,7 +1196,8 @@ KS.1.2 Alias of B.1.1.529.2.86.1.1.13.1.2, S:T678I, Russia JN.1.14 Alias of B.1.1.529.2.86.1.1.14, S:R346S, after C26894T, C25680T, USA JN.1.15 Alias of B.1.1.529.2.86.1.1.15, S:A688V JN.1.15.1 Alias of B.1.1.529.2.86.1.1.15.1, S:F456L, ORF3a:R122S, Ecuador -LU.1 Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T +LU.1 Alias of B.1.1.529.2.86.1.1.15.1.1, S:R346T, after C19269T +LU.2 Alias of B.1.1.529.2.86.1.1.15.1.2, S:R346T, after T20865C JN.1.16 Alias of B.1.1.529.2.86.1.1.16, S:F456L, from sars-cov-2-variants/lineage-proposals#1253 JN.1.16.1 Alias of B.1.1.529.2.86.1.1.16.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 LF.1 Alias of B.1.1.529.2.86.1.1.16.1.1, ORF1a:A1268T, ORF1a:S2103F diff --git a/lineages.csv b/lineages.csv index b1149dcf..c0a0deb8 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2557898,49 +2557898,6 @@ Switzerland/TI-EOC-42_28679881/2024,JN.1.15.1 Switzerland/TI-EOC-42_28687967/2024,JN.1.15.1 Switzerland/TI-EOC-42_28669804/2024,JN.1.15.1 Ecuador/GENSBIO-INSPI-105260/2024,LU.1 -USA/2024CV0810/2024,LU.1 -USA/AZ-ASPHL-0810/2024,LU.1 -Ecuador/GENSBIO-INSPI-1171-1721/2024,LU.1 -Ecuador/GENSBIO-INSPI-105265/2024,LU.1 -Ecuador/GENSBIO-INSPI-105245/2024,LU.1 -Ecuador/GENSBIO-INSPI-105259/2024,LU.1 -USA/NY-PRL-240521_81C03/2024,LU.1 -USA/NY-PRL-240529_81F03/2024,LU.1 -USA/NY-NYULH-19453/2024,LU.1 -Ecuador/NIC-INSPI-435324/2024,LU.1 -Ecuador/NIC-INSPI-0217-5728/2024,LU.1 -Ecuador/NIC-INSPI-435344/2024,LU.1 -Ecuador/NIC-INSPI-0875-10746/2024,LU.1 -Canada/AB-ABPHL-117734/2024,LU.1 -USA/NJ-PHEL-V24005509/2024,LU.1 -Ecuador/NIC-INSPI-0875-10792/2024,LU.1 -Spain/PV-HUB-50921865/2024,LU.1 -Spain/GA-CHUAC-12259/2024,LU.1 -Spain/MD-HULP-072671198/2024,LU.1 -Spain/TO-HUT-72138936/2024,LU.1 -Spain/CT-HUVH-E35135/2024,LU.1 -England/CLIMB-CM7YESQH/2024,LU.1 -England/CLIMB-CM7YGTD4/2024,LU.1 -England/CLIMB-CM7YEICU/2024,LU.1 -England/CLIMB-CM7YJHKY/2024,LU.1 -England/CLIMB-CM7YEUF4/2024,LU.1 -England/CLIMB-CM7YRC43/2024,LU.1 -England/CLIMB-CM7YEUKJ/2024,LU.1 -England/CLIMB-CM7YKOKT/2024,LU.1 -England/CLIMB-CM7YJUTP/2024,LU.1 -England/CLIMB-CM7YMZ9G/2024,LU.1 -England/CLIMB-CM7YFFZO/2024,LU.1 -England/CLIMB-CM7Y81HR/2024,LU.1 -England/CLIMB-CM7YED6P/2024,LU.1 -England/CLIMB-CM7YJ5CJ/2024,LU.1 -England/CLIMB-CM7Y8TOM/2024,LU.1 -England/CLIMB-CM7Y8DK1/2024,LU.1 -England/CLIMB-CM7YFN7B/2024,LU.1 -England/CLIMB-CM7YMPJS/2024,LU.1 -England/CLIMB-CM7YKYY6/2024,LU.1 -England/CLIMB-CM7YEPCC/2024,LU.1 -England/CLIMB-CM7YGGRN/2024,LU.1 -England/CLIMB-CM7YF8R9/2024,LU.1 USA/CA-GBW-GKPLAAAA21888/2024,XDY Spain/CT-HUVH-E47551/2024,XDY USA/CA-GBW-GKISBBBC25097/2024,XDY @@ -2560023,3 +2559980,114 @@ Spain/MC-HCUVA-70021621/2024,MC.1 Spain/PV-HUB-56161440/2024,MC.1 USA/VA-GBW-GKPLAAAA21282/2024,MC.1 USA/VA-GBW-GKISBBBE02013/2024,MC.1 +Israel/ICH-741201427/2024,JN.1.15.1 +Ecuador/GENSBIO-INSPI-1813-2655/2024,JN.1.15.1 +Ecuador/GENSBIO-INSPI-105408/2024,JN.1.15.1 +USA/OH-ODH-SC4032129/2024,JN.1.15.1 +USA/OH-ODH-SC4032017/2024,JN.1.15.1 +Ecuador/GENSBIO-INSPI-105425/2024,JN.1.15.1 +USA/CT-Yale-25907/2024,JN.1.15.1 +Ecuador/GENSBIO-INSPI-1811-7090/2024,LU.2 +Ecuador/GENSBIO-INSPI-105428/2024,LU.2 +Spain/CL-47172/2024,LU.2 +Spain/CL-47171/2024,LU.2 +Ecuador/GENSBIO-INSPI-1171-1753/2024,LU.2 +Ecuador/GENSBIO-INSPI-CI-75-Q/2024,LU.2 +Ecuador/GENSBIO-INSPI-1171-1721/2024,LU.2 +Ecuador/GENSBIO-INSPI-105265/2024,LU.2 +PuertoRico/S-6938/2024,LU.2 +PuertoRico/S-6940/2024,LU.2 +PuertoRico/S-6939/2024,LU.2 +Ecuador/GENSBIO-INSPI-105427/2024,LU.2 +Ecuador/GENSBIO-INSPI-105245/2024,LU.2 +Ecuador/GENSBIO-INSPI-105259/2024,LU.2 +USA/NJ-CDC-LC1106372/2024,LU.2 +USA/NJ-CDC-QDX97356862/2024,LU.2 +USA/NY-PRL-240521_81C03/2024,LU.2 +USA/NY-PRL-240529_81F03/2024,LU.2 +USA/NY-NYULH-19453/2024,LU.2 +Ecuador/GENSBIO-INSPI-CI-76-Q/2024,LU.2 +Ecuador/GENSBIO-INSPI-1812-8228/2024,LU.2 +USA/FL-GBW-GKISBBBC48195/2024,LU.2 +USA/FL-GBW-GKPLAAAA20731/2024,LU.2 +USA/NE-NM_L378163550/2024,LU.2 +USA/CO-CDPHE-41969161/2024,LU.2 +USA/2024CV0810/2024,LU.2 +USA/AZ-ASPHL-0810/2024,LU.2 +USA/NY-URMC-O5S1O657-1/2024,LU.2 +USA/OH-PLMI-JF8V-874/2024,LU.2 +USA/OH-ODH-SC4031997/2024,LU.2 +USA/OH-ODH-SC4031996/2024,LU.2 +Canada/AB-ABPHL-118627/2024,LU.1 +Canada/AB-ABPHL-118720/2024,LU.1 +Ecuador/NIC-INSPI-435344/2024,LU.1 +Ecuador/NIC-INSPI-0875-10746/2024,LU.1 +Canada/AB-ABPHL-117734/2024,LU.1 +USA/NJ-PHEL-V24005509/2024,LU.1 +USA/CA-LACPHL-AY06853/2024,LU.1 +Ecuador/NIC-INSPI-435324/2024,LU.1 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