diff --git a/lineage_notes.txt b/lineage_notes.txt index 8e8610ff..c8159192 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1262,6 +1262,7 @@ LF.4 Alias of B.1.1.529.2.86.1.1.16.1.4, N:R385K, ORF1a:T4368I LF.4.1 Alias of B.1.1.529.2.86.1.1.16.1.4.1, S:31del, ORF1a:G519S, ORF8:Q29*, from sars-cov-2-variants/lineage-proposals#1590 LF.5 Alias of B.1.1.529.2.86.1.1.16.1.5, S:T33A, S:N185D, C28660T LF.6 Alias of B.1.1.529.2.86.1.1.16.1.6, T3172G, T17859C, Portugal/Spain, from #2589 +LF.7 Alias of B.1.1.529.2.86.1.1.16.1.7, S:T22N, S:S31P, S:K182R, S:R190S, S:K444R, ORF9b:I5T, Senegal, from #2733 JN.1.16.2 Alias of B.1.1.529.2.86.1.1.16.2, C4777T, from sars-cov-2-variants/lineage-proposals#1253 LA.1 Alias of B.1.1.529.2.86.1.1.16.2.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1253 LA.2 Alias of B.1.1.529.2.86.1.1.16.2.2, S:R346I, from sars-cov-2-variants/lineage-proposals#1089 @@ -1387,6 +1388,7 @@ JN.1.58.1 Alias of B.1.1.529.2.86.1.1.58.1, S:S60P JN.1.58.2 Alias of B.1.1.529.2.86.1.1.58.2, S:R346T LR.1 Alias of B.1.1.529.2.86.1.1.58.2.1, S:F456L (22928C) LR.2 Alias of B.1.1.529.2.86.1.1.58.2.2, S:F456V +LR.3 Alias of B.1.1.529.2.86.1.1.58.2.3, S:F456L (22930A), USA/Puerto Rico JN.1.58.3 Alias of B.1.1.529.2.86.1.1.58.3, S:S31F JN.1.59 Alias of B.1.1.529.2.86.1.1.59, ORF1a:A1204S JN.1.59.1 Alias of B.1.1.529.2.86.1.1.59.1, S:S31del, S:R190S, S:R346T, ORF1a:I841V, Americas @@ -4181,6 +4183,13 @@ XDT Recombinant lineage of BA.2.86.4, GK.1 (breakpoint between 23673-24378), Ire XDU Recombinant lineage of BA.2.86.1, XBB.1.16 (breakpoint between 11957-12729), Japan, from #2502 XDV Recombinant lineage of XDE, JN.1, XDE, JN.1 (breakpoints between 19327-21608, 27916-28296, 28959-29534), USA/China, from #2402 XDV.1 S:F456L (T22930A), on C11572T branch, Hong Kong +XDV.1.1 S:S60P, T4579A, T9208G, China +XDV.1.2 S:R346T, N:I292T, ORF1a:L3116F, China +XDV.1.2.1 S:K462R, ORF1a:L3829F +XDV.1.3 S:T572I +XDV.1.4 S:I1114T +XDV.1.5 S:G184S, S:K478I, China +XDV.1.6 S:K478T, S:A263T, ORF1a:V1783I, ORF1a:E1209D XDW Recombinant lineage of JN.2 (T1030C branch), XDA (breakpoint between 23424-23603), Japan, from sars-cov-2-variants/lineage-proposals#1471 XDY Recombinant lineage of LB.1.2.1 and KP.3.2 (breakpoint between 22131-22599), Sweden/Spain, from sars-cov-2-variants/lineage-proposals#1559 XDZ Recombinant lineage of JG.3 and JN.1.1.10 (breakpoint between 11043-12788), Europe/North America, from sars-cov-2-variants/lineage-proposals#1356 diff --git a/lineages.csv b/lineages.csv index a137ec58..49fc2df0 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2565451,3 +2565451,163 @@ Wales/CLIMB-CM7YRJXS/2024,LF.6 Wales/CLIMB-CM7YEM4T/2024,LF.6 Wales/CLIMB-CM7YJFG9/2024,LF.6 Wales/CLIMB-CM7YFU14/2024,LF.6 +PuertoRico/S-6852/2024,LR.3 +USA/PR-CVL-025225/2024,LR.3 +USA/OH-ODH-SC4032073/2024,LR.3 +PuertoRico/S-7155/2024,LR.3 +PuertoRico/S-7066/2024,LR.3 +USA/TX-HMH-M-141938/2024,LR.3 +CHN/YNCDC-0946/2024,XDV.1.1 +HongKong/VB24230989/2024,XDV.1.1 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+Senegal/SN_IRPM_40138/2024,LF.7 +USA/VA-GBW-GKPLAAAA12159/2024,LF.7 +France/BFC-RELAB-IPP08372/2024,LF.7 +Senegal/SN_IRPM_40407/2024,LF.7 +Australia/WA16302/2024,LF.7 +Canada/ON-PHL-202410536/2024,LF.7 +England/CLIMB-CM7YKSCU/2024,LF.7