diff --git a/lineage_notes.txt b/lineage_notes.txt index 167629d2..fddda99b 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2592,6 +2592,7 @@ XBB.1.17.2 Defined by ORF1a:A698S, Russia, from issue #1712 XBB.1.18 Defined by A8001G, Brazil XBB.1.18.1 Defined by S:F486P, Brazil XBB.1.19 Defined by S:486P, C541T, A10042G, T21363C, pre ORF8:8*, Pakistan, from #1680 +XBB.1.19.1 Defined by S:E554K XBB.2 Defined by S:D253G, from issue #1173 XBB.2.1 Defined by S:N764R (C23853G), two step mutation on top of C23854A (S:N764K defining of all Omicrons) XBB.2.2 Defined by S:Q613H diff --git a/lineages.csv b/lineages.csv index ad7979ee..4e9fa4b3 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2235418,71 +2235418,71 @@ Italy/ABR-CAST-H8184/2023,XBB.1.19 Italy/UMB-LAOP-103-2-20-2022/2023,XBB.1.19 Italy/MAR_UNIVPM_Marche_42055_WG/2023,XBB.1.19 Italy/MAR_UNIVPM_Marche_42054_WG/2023,XBB.1.19 -Australia/WA11884/2023,XBB.1.19 -Denmark/DCGC-642748/2023,XBB.1.19 -Pakistan/NIH-B120-S10/2023,XBB.1.19 -Malaysia/IMR_CV05397/2023,XBB.1.19 -England/QEUH-326F0505/2023,XBB.1.19 -Pakistan/NIH-B119-S11/2023,XBB.1.19 -Netherlands/ZH-EMC-7876/2023,XBB.1.19 -England/PHEC-YYE8KNH/2023,XBB.1.19 -Pakistan/NIH-B121-S2/2023,XBB.1.19 -Pakistan/NIH-B122-S20/2023,XBB.1.19 -England/QEUH-326FCFA1/2023,XBB.1.19 -USA/MA-CDCBI-CRSP_CXDUYVCKBCSOS3EX/2023,XBB.1.19 -Australia/VIC81574/2023,XBB.1.19 -Malaysia/IMR_LF02530/2023,XBB.1.19 -Malaysia/IMR_LF02503/2023,XBB.1.19 -Pakistan/NIH-B121-S4/2023,XBB.1.19 -Pakistan/IDRL-AKU-KHI-1333-S6/2023,XBB.1.19 -PAK/1333-S6/2023,XBB.1.19 -PAK/1135-S7/2023,XBB.1.19 -Pakistan/IDRL-AKU-KHI-1135-S7/2023,XBB.1.19 -England/PHEC-YYE8YBE/2023,XBB.1.19 -England/PHEC-YYE8TP9/2023,XBB.1.19 -England/PHEC-YYEGT66/2023,XBB.1.19 -USA/AZ-ASU98867/2023,XBB.1.19 -USA/AZ-ASU98742/2023,XBB.1.19 -USA/AZ-ASU98871/2023,XBB.1.19 -USA/AZ-ASU98865/2023,XBB.1.19 -USA/IL-CDC-VSX-A064064/2023,XBB.1.19 -England/PHEP-YYGPCTT/2023,XBB.1.19 -England/PHEP-YYGPCFK/2023,XBB.1.19 -Australia/NSW-ICPMR-43212/2023,XBB.1.19 -Australia/VIC81576/2023,XBB.1.19 -Australia/NSW-ICPMR-43498/2023,XBB.1.19 -England/PHEC-YYEK3XP/2023,XBB.1.19 -Australia/NSW-ICPMR-43308/2023,XBB.1.19 -Australia/VIC81673/2023,XBB.1.19 -Pakistan/NIH-B122-S13/2023,XBB.1.19 -Pakistan/NIH-B121-S3/2023,XBB.1.19 -France/IDF-IPP05133/2023,XBB.1.19 -USA/NJ-CDC-VSX-A064133/2023,XBB.1.19 -PAK/603-S20/2023,XBB.1.19 -PAK/1215-S1/2023,XBB.1.19 -Pakistan/IDRL-AKU-KHI-1215-S1/2023,XBB.1.19 -Pakistan/IDRL-AKU-KHI-603-S20/2023,XBB.1.19 -Spain/CT-HUB07859/2023,XBB.1.19 -Japan/PG-453715/2023,XBB.1.19 -Japan/PG-452121/2023,XBB.1.19 -USA/TX-HMH-M-126359/2023,XBB.1.19 -PAK/0847-S9/2023,XBB.1.19 -Pakistan/IDRL-0847-S9/2023,XBB.1.19 -Israel/SMC-7112848/2023,XBB.1.19 -Israel/SMC-7112849/2023,XBB.1.19 -Israel/SMC-7112854/2023,XBB.1.19 -Israel/SMC-7112850/2023,XBB.1.19 -Israel/SMC-7112853/2023,XBB.1.19 -Italy/LOM_IZSLER_68228_1/2023,XBB.1.19 -USA/MI-CDC-QDX46612471/2023,XBB.1.19 -USA/MI-UM-10049716284/2023,XBB.1.19 -USA/MI-UM-L362532288/2023,XBB.1.19 -USA/GA-CDC-LC0999300/2023,XBB.1.19 -USA/CA-CDC-VSX-A064174/2023,XBB.1.19 -USA/MI-UM-L362471899/2023,XBB.1.19 -USA/MI-CDC-LC1022365/2023,XBB.1.19 -USA/MI-UM-L362479718/2023,XBB.1.19 -Canada/ON-PHL-23-15668/2023,XBB.1.19 -USA/MI-UM-L362490265/2023,XBB.1.19 -USA/MI-CDC-QDX46827388/2023,XBB.1.19 +Australia/WA11884/2023,XBB.1.19.1 +Denmark/DCGC-642748/2023,XBB.1.19.1 +Pakistan/NIH-B120-S10/2023,XBB.1.19.1 +Malaysia/IMR_CV05397/2023,XBB.1.19.1 +England/QEUH-326F0505/2023,XBB.1.19.1 +Pakistan/NIH-B119-S11/2023,XBB.1.19.1 +Netherlands/ZH-EMC-7876/2023,XBB.1.19.1 +England/PHEC-YYE8KNH/2023,XBB.1.19.1 +Pakistan/NIH-B121-S2/2023,XBB.1.19.1 +Pakistan/NIH-B122-S20/2023,XBB.1.19.1 +England/QEUH-326FCFA1/2023,XBB.1.19.1 +USA/MA-CDCBI-CRSP_CXDUYVCKBCSOS3EX/2023,XBB.1.19.1 +Australia/VIC81574/2023,XBB.1.19.1 +Malaysia/IMR_LF02530/2023,XBB.1.19.1 +Malaysia/IMR_LF02503/2023,XBB.1.19.1 +Pakistan/NIH-B121-S4/2023,XBB.1.19.1 +Pakistan/IDRL-AKU-KHI-1333-S6/2023,XBB.1.19.1 +PAK/1333-S6/2023,XBB.1.19.1 +PAK/1135-S7/2023,XBB.1.19.1 +Pakistan/IDRL-AKU-KHI-1135-S7/2023,XBB.1.19.1 +England/PHEC-YYE8YBE/2023,XBB.1.19.1 +England/PHEC-YYE8TP9/2023,XBB.1.19.1 +England/PHEC-YYEGT66/2023,XBB.1.19.1 +USA/AZ-ASU98867/2023,XBB.1.19.1 +USA/AZ-ASU98742/2023,XBB.1.19.1 +USA/AZ-ASU98871/2023,XBB.1.19.1 +USA/AZ-ASU98865/2023,XBB.1.19.1 +USA/IL-CDC-VSX-A064064/2023,XBB.1.19.1 +England/PHEP-YYGPCTT/2023,XBB.1.19.1 +England/PHEP-YYGPCFK/2023,XBB.1.19.1 +Australia/NSW-ICPMR-43212/2023,XBB.1.19.1 +Australia/VIC81576/2023,XBB.1.19.1 +Australia/NSW-ICPMR-43498/2023,XBB.1.19.1 +England/PHEC-YYEK3XP/2023,XBB.1.19.1 +Australia/NSW-ICPMR-43308/2023,XBB.1.19.1 +Australia/VIC81673/2023,XBB.1.19.1 +Pakistan/NIH-B122-S13/2023,XBB.1.19.1 +Pakistan/NIH-B121-S3/2023,XBB.1.19.1 +France/IDF-IPP05133/2023,XBB.1.19.1 +USA/NJ-CDC-VSX-A064133/2023,XBB.1.19.1 +PAK/603-S20/2023,XBB.1.19.1 +PAK/1215-S1/2023,XBB.1.19.1 +Pakistan/IDRL-AKU-KHI-1215-S1/2023,XBB.1.19.1 +Pakistan/IDRL-AKU-KHI-603-S20/2023,XBB.1.19.1 +Spain/CT-HUB07859/2023,XBB.1.19.1 +Japan/PG-453715/2023,XBB.1.19.1 +Japan/PG-452121/2023,XBB.1.19.1 +USA/TX-HMH-M-126359/2023,XBB.1.19.1 +PAK/0847-S9/2023,XBB.1.19.1 +Pakistan/IDRL-0847-S9/2023,XBB.1.19.1 +Israel/SMC-7112848/2023,XBB.1.19.1 +Israel/SMC-7112849/2023,XBB.1.19.1 +Israel/SMC-7112854/2023,XBB.1.19.1 +Israel/SMC-7112850/2023,XBB.1.19.1 +Israel/SMC-7112853/2023,XBB.1.19.1 +Italy/LOM_IZSLER_68228_1/2023,XBB.1.19.1 +USA/MI-CDC-QDX46612471/2023,XBB.1.19.1 +USA/MI-UM-10049716284/2023,XBB.1.19.1 +USA/MI-UM-L362532288/2023,XBB.1.19.1 +USA/GA-CDC-LC0999300/2023,XBB.1.19.1 +USA/CA-CDC-VSX-A064174/2023,XBB.1.19.1 +USA/MI-UM-L362471899/2023,XBB.1.19.1 +USA/MI-CDC-LC1022365/2023,XBB.1.19.1 +USA/MI-UM-L362479718/2023,XBB.1.19.1 +Canada/ON-PHL-23-15668/2023,XBB.1.19.1 +USA/MI-UM-L362490265/2023,XBB.1.19.1 +USA/MI-CDC-QDX46827388/2023,XBB.1.19.1