From 3f25b1954792c6b0a68ca4a53d7ed936b33370e8 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Mon, 11 Sep 2023 14:06:39 +0200 Subject: [PATCH] Designate GW.5.1 (XBB.1.19.1.5.1, ORF3a:W149C, Pakistan) with 60 seqs --- lineage_notes.txt | 1 + lineages.csv | 33 ++++++++++++++++++++++++++++++++- 2 files changed, 33 insertions(+), 1 deletion(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index bf0bf543..f2c0b304 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -3116,6 +3116,7 @@ GW.2 Alias of XBB.1.19.1.2, S:D936G, USA GW.3 Alias of XBB.1.19.1.3, ORF1a:S100N, ORF1a:N3537S GW.4 Alias of XBB.1.19.1.4, ORF1a:M3280I GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L(T22928C), Pakistan, from sars-cov-2-variants/lineage-proposals#61 +GW.5.1 Alias of XBB.1.19.1.5.1, ORF3a:W149C, Pakistan XBB.1.19.2 Defined by S:P521S, Pakistan From sars-cov-2-variants/lineage-proposals#233 XBB.1.20 Defined by C541T, ORF3a:A72V, ORF1a:P4312T, pre ORF8:8*, Malaysia XBB.1.21 Defined by S:486A, ORF1a:K1247R, Turkey, from #1646 diff --git a/lineages.csv b/lineages.csv index 2f4e4bd3..c4b6be13 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2451376,7 +2451376,6 @@ Australia/NSW-ICPMR-47976/2023,XBB.1.19.2 Australia/NSW-ICPMR-47806/2023,XBB.1.19.2 Australia/NSW-ICPMR-47979/2023,XBB.1.19.2 Australia/NSW-ICPMR-47801/2023,XBB.1.19.2 -Canada/ON-PHL-23-26905/2023,GW.5 Australia/WA14482/2023,GW.5 Shanghai/SCDC-HG0504-476/2023,GW.5 CHN/SH-HG20230504-476/2023,GW.5 @@ -2464444,3 +2464443,35 @@ Japan/PG-531782/2023,EF.3 Japan/PG-532417/2023,EF.3 Japan/PG-545641/2023,EF.3 Japan/OPHO-Hb23-2245/2023,EF.3 +Pakistan/NIH-B158-S4/2023,GW.5.1 +Pakistan/IDRL-AKU-KHI-4144-S12/2023,GW.5.1 +USA/NY-GBW-H10-016-3528/2023,GW.5.1 +Pakistan/IDRL-AKU-KHI-4115-S14/2023,GW.5.1 +Canada/ON-PHL-23-26905/2023,GW.5.1 +England/CLIMB-CM7YFXU7/2023,GW.5.1 +England/CLIMB-CM7YR8I7/2023,GW.5.1 +Canada/ON-PHL-23-29227/2023,GW.5.1 +Sweden/O-14_SE300_DC23-005523/2023,GW.5.1 +England/CLIMB-CM7YMQ4M/2023,GW.5.1 +USA/IL-CDC-QDX84133224/2023,GW.5.1 +USA/TX-HMH-M-131918/2023,GW.5.1 +USA/TX-HMH-M-131917/2023,GW.5.1 +USA/TX-HMH-M-131986/2023,GW.5.1 +Pakistan/NIH-AHF-S23/2023,GW.5.1 +Pakistan/NIH-B158-S22/2023,GW.5.1 +USA/CA-HLX-STM-AYJU7NWFA/2023,GW.5.1 +England/CLIMB-CM7Y8FG8/2023,GW.5.1 +Italy/ABR-IZSGC-17275/2023,GW.5.1 +England/CLIMB-CM7YRMHH/2023,GW.5.1 +England/CLIMB-CM7Y8GAI/2023,GW.5.1 +USA/CA-HLX-STM-U7RXZQ2HK/2023,GW.5.1 +Pakistan/NIH-B158-S3/2023,GW.5.1 +Denmark/DCGC-659110/2023,GW.5.1 +Wales/CLIMB-CM7YJ63H/2023,GW.5.1 +Denmark/DCGC-658922/2023,GW.5.1 +Spain/CT_HUB_08577/2023,GW.5.1 +Spain/CT-HUB-08577/2023,GW.5.1 +New_Zealand/ESR-YA4461/2023,GW.5.1 +NewZealand/ESR-YA4461/2023,GW.5.1 +USA/MI-UM-L368115700/2023,GW.5.1 +USA/MI-UM-L368081216/2023,GW.5.1