diff --git a/lineage_notes.txt b/lineage_notes.txt index f8d3cfae..f8454dd5 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -784,7 +784,7 @@ BA.2.44 Alias of B.1.1.529.2.44, mainly found in Belgium and Luxembourg, from pa BA.2.45 Alias of B.1.1.529.2.45, mainly found in Sweden and Denmark, from pango-designation issue #616 BA.2.46 Alias of B.1.1.529.2.46, mainly found in Scotland, from pango-designation issue #626 BA.2.47 Alias of B.1.1.529.2.47, mainly found in Denmark, England, and USA, from pango-designation issue #631 -BA.2.48 Alias of B.1.1.529.2.48, mainly found in USA, Scotland and England, from pango-designation issue #634 +BA.2.48 Alias of B.1.1.529.2.48, ORF1a:T1322I, S:Y248S, T4579A, mainly found in USA, Scotland and England, from pango-designation issue #634 BA.2.49 Alias of B.1.1.529.2.49, mainly found in France, England and USA, from pango-designation issue #640 BA.2.50 Alias of B.1.1.529.2.50, mainly found in Scotland and England, from pango-designation issue #641 BA.2.51 Alias of B.1.1.529.2.51, mainly found in Denmark, from pango-designation issue #644 @@ -875,7 +875,7 @@ DV.6 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6, T15591C DV.6.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.1, S:Q613H, T15591C, Central Europe DV.6.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.6.2, S:Q613H, C6628T, Asia From #2045 DV.7 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7, S:L858I, ORF1a:A3548V, England, from #2038 -DV.7.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F, S:F456L, Spain/Austria, from sars-cov-2-variants/lineage-proposals#135 +DV.7.1 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F, S:F456L(T22928C), Spain/Austria, from sars-cov-2-variants/lineage-proposals#135 DV.7.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.2, C703T, England DV.8 Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.8, S:Q613H, C8299T, C19602T, Sweden CH.1.1.2 Alias of B.1.1.529.2.75.3.4.1.1.1.1.2, defined by S:T883I, ORF1a:Y1846C, ORF1a:G2294S on T27576C branch @@ -1087,7 +1087,7 @@ BA.5.1.22 Alias of B.1.1.529.5.1.22, mainly found in Europe, defined by ORF1b:S1 DH.1 Alias of B.1.1.529.5.1.22.1, found mainly in Denmark, from pango-designation issue #1242 BA.5.1.23 Alias of B.1.1.529.5.1.23, mainly found in Spain, defined by ORF1a:S302F, from pango-designation issue #1135 DE.1 Alias of B.1.1.529.5.1.23.1, S:A694V -DE.2 Alias of B.1.1.529.5.1.23.2, S:R346T, S:G181V +DE.2 Alias of B.1.1.529.5.1.23.2, S:R346T, S:G181V, T4579A BA.5.1.24 Alias of B.1.1.529.5.1.24, mainly found in Finland, defined by ORF1b:V1271L, from pango-designation issue #1135 BA.5.1.25 Alias of B.1.1.529.5.1.25, mainly found in Mexico and Peru, defined by ORF7b:H42Y, from pango-designation issue #1135 DJ.1 Alias of B.1.1.529.5.1.25.1, found mainly in Peru, from pango-designation issue #1245 @@ -1266,7 +1266,7 @@ BA.5.2.21 Alias of B.1.1.529.5.2.21, mainly Indonesia, defined by C5284T on ORF1 CN.1 Alias of B.1.1.529.5.2.21.1, S:N450D, issue #1108 CN.2 Alias of B.1.1.529.5.2.21.2, S:R346T, S:Y28H, USA/Canada, from #1404 BA.5.2.22 Alias of B.1.1.529.5.2.22, mainly found in USA, Canada and Germany, from pango-designation issue #945 -BA.5.2.23 Alias of B.1.1.529.5.2.23, mainly found in USA, from pango-designation issue #1090 +BA.5.2.23 Alias of B.1.1.529.5.2.23, S:S255F, S:V445A, A4576T, T4579A, mainly found in USA, from pango-designation issue #1090 BA.5.2.24 Alias of B.1.1.529.5.2.24, defined by S:K444N on ORF1b:1050N branch CK.1 Alias of B.1.1.529.5.2.24.1, Pakistan, defined by S:N460K, issue #1120 CK.1.1 Alias of B.1.1.529.5.2.24.1.1, found mainly in Japan, from pango-designation issue #1452 @@ -1423,7 +1423,7 @@ ET.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.35.1 found mainly in UK and Belgium, fro BQ.1.1.36 Alias of B.1.1.529.5.3.1.1.1.1.1.1.36, Brazil, S:T883I BQ.1.1.37 Alias of B.1.1.529.5.3.1.1.1.1.1.1.37 Italy, ins_S:247:SAE, S:Y248D, from #1571 BQ.1.1.38 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38 found mainly in South Africa and USA, from pango-designation issue #1419 -EW.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.1 South Africa/Germany, S:478R From #1786 +EW.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.1 South Africa/Germany, S:478R, T4579A, from #1786 EW.2 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.2 S:A701V EW.3 Alias of B.1.1.529.5.3.1.1.1.1.1.1.38.3 S:A348S, South Africa BQ.1.1.39 Alias of B.1.1.529.5.3.1.1.1.1.1.1.39 found mainly in England, Singapore and Canada, from pango-designation issue #1385 @@ -1474,7 +1474,7 @@ FC.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72.1 S:478R, Indonesia BQ.1.1.73 Alias of B.1.1.529.5.3.1.1.1.1.1.1.73, found mainly in Canada and Spain, from pango-designation issue #1740 BQ.1.1.74 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74, S:182E, found mainly in Botswana and UK, from pango-designation issue #1817 FN.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74.1, S:478R, Botswana/England, from #1817 -BQ.1.1.75 Alias of B.1.1.529.5.3.1.1.1.1.1.1.75, S:K182N, S:F456L, Reunion +BQ.1.1.75 Alias of B.1.1.529.5.3.1.1.1.1.1.1.75, S:K182N, S:F456L(T22928C), Reunion BQ.1.1.76 Alias of B.1.1.529.5.3.1.1.1.1.1.1.76, C15180T, Slovenia/Austria BQ.1.1.77 Alias of B.1.1.529.5.3.1.1.1.1.1.1.77, C12853T, ORF1b:A1428V, USA/France BQ.1.1.78 Alias of B.1.1.529.5.3.1.1.1.1.1.1.78, ORF1a:M315I, ORF1b:P1953L, Japan @@ -2674,7 +2674,7 @@ XBB.1.5.1 USA, S:T573I HJ.1 Alias of XBB.1.5.1.1, S:E324K, C4543T, USA XBB.1.5.2 USA, S:T284I, S:K147I XBB.1.5.3 USA, S:A411S -JK.1 Alias of XBB.1.5.3.1, S:K304Q, USA +JK.1 Alias of XBB.1.5.3.1, S:K304Q, USA, from #1798 XBB.1.5.4 USA, S:T883I directly on XBB.1.5 polytomy XBB.1.5.5 USA, S:K1181I XBB.1.5.6 USA, S:V952I @@ -2753,7 +2753,7 @@ GR.1 Alias of XBB.1.5.42.1, S:445S, Vietnam From #1966 XBB.1.5.43 C18501T, Singapore/Malaysia/Indonesia XBB.1.5.44 S:K356T, S:T572I, USA, from #1907 HC.1 Alias of XBB.1.5.44.1, S:P631S, USA, from sars-cov-2-variants/lineage-proposals#106 -HC.2 Alias of XBB.1.5.44.2, S:F157L, Canada From sars-cov-2-variants/lineage-proposals#433 +HC.2 Alias of XBB.1.5.44.2, S:F157L, Canada, from #2202 XBB.1.5.45 S:478R, C27425T, G28079T, India-GJ/MH, from #1792 XBB.1.5.46 C5770T, C15279T, Germany/France GB.1 Alias of XBB.1.5.46.1, S:L518V, France, from #1969 @@ -2844,7 +2844,7 @@ HD.1.1 Alias of XBB.1.5.93.1.1, S:K356T, Dominican Republic From sars-cov-2-vari XBB.1.5.94 S:Q613H, T25461C, France XBB.1.5.95 ORF1a:A1851V HS.1 Alias of XBB.1.5.95.1, S:478R, Mexico -HS.1.1 Alias of XBB.1.5.95.1.1, S:F456L, USA, from #2237 +HS.1.1 Alias of XBB.1.5.95.1.1, S:F456L(T22928C), USA, from #2237 XBB.1.5.96 C28603T XBB.1.5.97 S:T941S, C7834T, New Zealand/Australia XBB.1.5.98 S:E554K, ORF8:V32L, Ghana @@ -2855,9 +2855,9 @@ XBB.1.5.101 ORF7a:E3Q, C14877T, Scandinavia/Poland/Vietnam XBB.1.5.102 C6896T, C14085T, C19488T, Brazil-Amazonas JD.1 Alias of XBB.1.5.102.1, S:L455F, S:F456L (T22928C), A14634G, T28282C, Brazil, from #2071 JD.1.1 Alias of XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain From #2174 -JD.1.2 Alias of XBB.1.5.102.1.2, S:P1162S, Brazil +JD.1.2 Alias of XBB.1.5.102.1.2, S:P1162S, Brazil, from sars-cov-2-variants/lineage-proposals#136 XBB.1.5.103 S:F456L (T22928C), S:180/184del, S:N185D, ORF1a:T1437I, ORF7b:C41W, T21357C, Argentina From #2192 -XBB.1.5.104 S:K304Q, USA +XBB.1.5.104 S:K304Q, USA, from #1798 XBB.1.5.105 S:K304N, USA/Europe XBB.1.6 USA, S:L216F, S:H146K, from issue #1428 XBB.1.7 USA-NY, S:V608I @@ -2883,7 +2883,7 @@ FL.2.2.1 Alias of XBB.1.9.1.2.2.1, S:T307I, Indonesia, from #2027 FL.2.3 Alias of XBB.1.9.1.2.3, ORF1b:K1383R, China, from #2016 FL.2.3.1 Alias of XBB.1.9.1.2.3.1, S:K356T, China FL.2.4 Alias of XBB.1.9.1.2.4, ORF8:S67F, China -FL.2.5 Alias of XBB.1.9.1.2.5, S:Q314E，from https://github.com/sars-cov-2-variants/lineage-proposals/issues/342 +FL.2.5 Alias of XBB.1.9.1.2.5, S:Q314E，from sars-cov-2-variants/lineage-proposals#342 FL.2.6 Alias of XBB.1.9.1.2.6, S:N641K, from #2180 FL.3 Alias of XBB.1.9.1.3, T1753C, England FL.3.1 Alias of XBB.1.9.1.3.1, ORF1a:T2264I, England @@ -2899,9 +2899,9 @@ FL.4.4 Alias of XBB.1.9.1.4.4, ORF1a:T1542I, T24544C, S:478T (reversion), Indone FL.4.5 Alias of XBB.1.9.1.4.5, ORF8:S67F, ORF1a:D1228G, C23635T, from #2018 FL.4.6 Alias of XBB.1.9.1.4.6, T5098C, C13965T, Australia/China FL.4.7 Alias of XBB.1.9.1.4.7, S:L452R, Singapore, from sars-cov-2-variants/lineage-proposals#92 -FL.4.8 Alias of XBB.1.9.1.4.8, S:478R, Indonesia -FL.4.9 Alias of XBB.1.9.1.4.9, S:S254P, ORF3a:D173G -FL.4.10 Alias of XBB.1.9.1.4.10, S:V1129I, China +FL.4.8 Alias of XBB.1.9.1.4.8, S:478R, Indonesia, from #2024 +FL.4.9 Alias of XBB.1.9.1.4.9, S:S254P, ORF3a:D173G, from #2081 +FL.4.10 Alias of XBB.1.9.1.4.10, S:V1129I, China, from #2087 FL.5 Alias of XBB.1.9.1.5, N:T362I FL.5.1 Alias of XBB.1.9.1.5.1, S:M177T, from #2041 FL.6 Alias of XBB.1.9.1.6, ORF1a:I849V, Bahrain/Egypt/Oman/Austria @@ -2910,7 +2910,7 @@ FL.8 Alias of XBB.1.9.1.8, ORF3a:I62F, Europe FL.9 Alias of XBB.1.9.1.9, C23707T, T29691C, England FL.10 Alias of XBB.1.9.1.10, ORF1a:C657Y FL.10.1 Alias of XBB.1.9.1.10.1, S:E554K, C4234T, 220bp deletion in ORF8, South Korea, from #2040 -FL.10.2 Alias of XBB.1.9.1.10.2, S:K356T, S:T523N, Canada/USA +FL.10.2 Alias of XBB.1.9.1.10.2, S:K356T, S:T523N, Canada/USA, from #2220 FL.11 Alias of XBB.1.9.1.11, ORF1a:L349F, France/French Guiana, from #1947 FL.12 Alias of XBB.1.9.1.12, ORF1a:C2210F FL.13 Alias of XBB.1.9.1.13, G4354A @@ -2931,9 +2931,9 @@ FL.19 Alias of XBB.1.9.1.19, T2377C, C17502T, T24505G, South Korea FL.19.1 Alias of XBB.1.9.1.19.1, S:F456L (22928C), ORF1b:A1877V, Spain/Italy/Puerto Rico, from #2138 FL.20 Alias of XBB.1.9.1.20, S:F456L (22928C), S:Q52H, Spain, from #2072 FL.20.1 Alias of XBB.1.9.1.20.1, S:L455W, Northern Ireland/England, from #2145 -FL.21 Alias of XBB.1.9.1.21, A10564T, South Korea/China +FL.21 Alias of XBB.1.9.1.21, A10564T FL.21.1 Alias of XBB.1.9.1.21.1, S:D1084N, South Korea From #2143 -FL.21.2 Alias of XBB.1.9.1.21.1, ORF1a:V1019F, ORF1a:I2873M, China From sars-cov-2-variants/lineage-proposals#187 +FL.21.2 Alias of XBB.1.9.1.21.2, ORF1a:V1019F, ORF1a:I2873M, China From sars-cov-2-variants/lineage-proposals#187 FL.22 Alias of XBB.1.9.1.22, ORF1b:I1416V, T24184C FL.23 Alias of XBB.1.9.1.23, ORF1b:V1132I, Philippines FL.23.1 Alias of XBB.1.9.1.23.1, ORF1a:A2584V, C23185T, C8311T @@ -2974,22 +2974,22 @@ EG.5.1.1 Alias of XBB.1.9.2.5.1.1, China, from pango-designation issue #2020 HK.1 Alias of XBB.1.9.2.5.1.1.1, S:G257V, China from https://github.com/sars-cov-2-variants/lineage-proposals/issues/359 HK.2 Alias of XBB.1.9.2.5.1.1.2, S:Q14H, China From sars-cov-2-variants/lineage-proposals#432 HK.3 Alias of XBB.1.9.2.5.1.1.3, S:L455F, China from https://github.com/sars-cov-2-variants/lineage-proposals/issues/414 -HK.3.1 Alias of XBB.1.9.2.5.1.1.3.1, S:F157L, China From sars-cov-2-variants/lineage-proposals#580 +HK.3.1 Alias of XBB.1.9.2.5.1.1.3.1, S:F157L, China, from #2193 HK.4 Alias of XBB.1.9.2.5.1.1.4, S:T883I, China HK.5 Alias of XBB.1.9.2.5.1.1.5, S:Q677H, China -HK.6 Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, UK/USA +HK.6 Alias of XBB.1.9.2.5.1.1.6, S:D253G, ORF1a:A1923T, UK/USA, from #2184 HK.7 Alias of XBB.1.9.2.5.1.1.7, S:N148T, China HK.8 Alias of XBB.1.9.2.5.1.1.8, S:L455F, on C11779T branch, China From #2230 HK.9 Alias of XBB.1.9.2.5.1.1.9, S:R190K, on C11779T branch, England From sars-cov-2-variants/lineage-proposals#564 HK.11 Alias of XBB.1.9.2.5.1.1.11, S:G184S, China/England/SouthKorea, from #2255 EG.5.1.2 Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I From sars-cov-2-variants/lineage-proposals#301 EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T from https://github.com/sars-cov-2-variants/lineage-proposals/issues/222 -JG.1 Alias of XBB.1.9.2.5.1.3.1, S:T732I, France From sars-cov-2-variants/lineage-proposals#519 +JG.1 Alias of XBB.1.9.2.5.1.3.1, S:T732I, France, from #2218 JG.2 Alias of XBB.1.9.2.5.1.3.2, S:G75V, Europe, from #2249 -EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R from https://github.com/cov-lineages/pango-designation/issues/2117 +EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R, from #2117 JJ.1 Alias of XBB.1.9.2.5.1.4.1, S:L455F, ORF3a:I47V, China/Japan From #2208 EG.5.1.5 Alias of XBB.1.9.2.5.1.5, ORF1a:L3293I, ORF1b:T1274I, ORF1b:L2349V, Portugal -EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA from https://github.com/sars-cov-2-variants/lineage-proposals/issues/394 +EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA, from sars-cov-2-variants/lineage-proposals#394 HV.1 Alias of XBB.1.9.2.5.1.6.1, S:L452R, USA EG.5.1.7 Alias of XBB.1.9.2.5.1.7, S:K278N EG.5.2 Alias of XBB.1.9.2.5.2, N:L161F @@ -3004,7 +3004,7 @@ EG.9 Alias of XBB.1.9.2.9, S:403K, ORF1a:T1474I, ORF1b:N969S From sars-cov-2-var EG.9.1 Alias of XBB.1.9.2.9.1, S:A344T, C13767T From sars-cov-2-variants/lineage-proposals#57 EG.10 Alias of XBB.1.9.2.10, S:A344T, S:R403K, Germany/Austria From sars-cov-2-variants/lineage-proposals#346 EG.10.1 Alias of XBB.1.9.2.10.1, S:S494P, S:A701V From sars-cov-2-variants/lineage-proposals#346 -EG.11 Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia，from https://github.com/sars-cov-2-variants/lineage-proposals/issues/523 +EG.11 Alias of XBB.1.9.2.11, S:E554K, A26319G, Malaysia，from sars-cov-2-variants/lineage-proposals#523 EG.12 Alias of XBB.1.9.2.12, S:E554K, N:R195T, ORF1a:T4159I, Oman/Austria/Brunei/India EG.13 Alias of XBB.1.9.2.13, ORF1a:K798N XBB.1.9.3 ORF1b:G2005S, ORF1b:G1568C, Europe, from https://github.com/jmcbroome/auto-pango-designation/pull/193 @@ -3040,9 +3040,9 @@ FU.2 Alias of XBB.1.16.1.2, C8692T FU.2.1 Alias of XBB.1.16.1.2.1, S:E619Q, Vietnam FU.3 Alias of XBB.1.16.1.3, C11665T, India-RJ FU.3.1 Alias of XBB.1.16.1.3.1, S:G184S -FU.4 Alias of XBB.1.16.1.4, S:Y453F, T29410C from #1832 +FU.4 Alias of XBB.1.16.1.4, S:Y453F, T29410C, from #1832 FU.5 Alias of XBB.1.16.1.5, S:K97E, ORF1a:R542C, Bangladesh, from #2137 -XBB.1.16.2 Defined by ORF3a:V13L, ORF1a:P926H, India From #1802 +XBB.1.16.2 Defined by ORF3a:V13L, ORF1a:P926H, India, from #1802 GY.1 Alias of XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066 GY.2 Alias of XBB.1.16.2.2, S:T883I GY.2.1 Alias of XBB.1.16.2.2.1, S:S255F, South Korea @@ -3051,12 +3051,12 @@ GY.4 Alias of XBB.1.16.2.4, S:N450K, C29095T, Laos, from https://github.com/sars GY.5 Alias of XBB.1.16.2.5, G9190C GY.6 Alias of XBB.1.16.2.6, ORF1a:V1765I From sars-cov-2-variants/lineage-proposals/#308 GY.7 Alias of XBB.1.16.2.7, ORF1a:G3617C, G5515T, Thailand/Laos -GY.8 Alias of XBB.1.16.2.8, S:F456L, C25452T, Japan，from #2148 +GY.8 Alias of XBB.1.16.2.8, S:F456L(T22928C), C25452T, Japan, from #2148 XBB.1.16.3 Defined by A2893C, India XBB.1.16.4 Defined by S:T678I, India, from #1903 XBB.1.16.5 Defined by T9991C,C16332T, India, from #1983 XBB.1.16.6 S:F456L (T22930A), A12397G, USA/Canada/China -JF.1 Alias of XBB.1.16.6.1, S:L455F, USA From sars-cov-2-variants/lineage-proposals#531 +JF.1 Alias of XBB.1.16.6.1, S:L455F, USA, from #2207 JF.2 Alias of XBB.1.16.6.2, S:Q675H, USA/Wales From sars-cov-2-variants/lineage-proposals#457 XBB.1.16.7 S:T732I after T12214C, Singapore/Japan/SouthKorea XBB.1.16.8 S:T732I after C28531T, India/USA/China/Australia @@ -3077,7 +3077,7 @@ XBB.1.16.19 ORF1b:V839I XBB.1.16.20 ORF7b:S31L XBB.1.16.21 ORF1a:V4072I XBB.1.16.22 ORF3a:E242Q, from #1893 -XBB.1.16.23 S:K304Q, India/USA/Japan/Singapore From sars-cov-2-variants/lineage-proposals#517 +XBB.1.16.23 S:K304Q, India/USA/Japan/Singapore, from #2187 XBB.1.16.24 S:K182E, S:V551I, S:E554K, on A25410G branch, India, from #2223 XBB.1.17 Defined by T27995C and ORF1a:L469F, from issue #1712 XBB.1.17.1 Defined by S:215H, S:S486P, from issue #1712 @@ -3103,11 +3103,11 @@ FE.1.2 Alias of XBB.1.18.1.1.2, A5488G XBB.1.19 Defined by S:486P, C541T, A10042G, T21363C, pre ORF8:8*, Pakistan, from #1680 XBB.1.19.1 Defined by S:E554K，Pakistan, from #1765 GW.1 Alias of XBB.1.19.1.1, ORF1a:D264N, N:M322V, China, from sars-cov-2-variants/lineage-proposals#157 -GW.1.1 Alias of XBB.1.19.1.1.1, S:F456L, China/Japan/Singapore From sars-cov-2-variants/lineage-proposals#355 +GW.1.1 Alias of XBB.1.19.1.1.1, S:F456L(T22928C), China/Japan/Singapore, from sars-cov-2-variants/lineage-proposals#355 GW.2 Alias of XBB.1.19.1.2, S:D936G, USA GW.3 Alias of XBB.1.19.1.3, ORF1a:S100N, ORF1a:N3537S GW.4 Alias of XBB.1.19.1.4, ORF1a:M3280I -GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L, Pakistan From sars-cov-2-variants/lineage-proposals#61 +GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L(T22928C), Pakistan, from sars-cov-2-variants/lineage-proposals#61 XBB.1.19.2 Defined by S:P521S, Pakistan From sars-cov-2-variants/lineage-proposals#233 XBB.1.20 Defined by C541T, ORF3a:A72V, ORF1a:P4312T, pre ORF8:8*, Malaysia XBB.1.21 Defined by S:486A, ORF1a:K1247R, Turkey, from #1646 @@ -3172,7 +3172,7 @@ XBB.1.40 S:Y453F, ORF1a:G519S, ORF1a:L2609F, ORF3a:P104S, Malaysia XBB.1.41 S:L335S, S:R403K, S:486P, possibly common in Central/West Africa, from #1997 XBB.1.41.1 S:478R, France From sars-cov-2-variants/lineage-proposals#150 JC.1 Alias of XBB.1.41.1.1, S:K77R, Japan/Hawaii -XBB.1.41.2 S:S494P From sars-cov-2-variants/lineage-proposals#389 +XBB.1.41.2 S:S494P, USA, from sars-cov-2-variants/lineage-proposals#389 XBB.1.42 S:486P, S:Q613H, on ORF1a:T4175I branch with XBB.1.9, Indonesia/Malaysia/China，from #1954 XBB.1.42.1 S:478R from https://github.com/sars-cov-2-variants/lineage-proposals/issues/198 XBB.1.42.2 C6040T, G9049A @@ -3340,7 +3340,7 @@ XCF.1 S:F157L, USA, from sars-cov-2-variants/lineage-proposals#274 XCF.2 S:S929I, Canada XCG Recombinant lineage of BA.5.2* and XBB.1, Mexico XCH Recombinant lineage of GK.1.3 and XBB.1.9 (or XBB.1.16), GK.1.3 Spike with ORF9b:I5T from donor, from #2173 -XCH.1 S:T573I +XCH.1 S:T573I, from #2173 XCJ Recombinant lineage of GM.2 with a little FP.1 (XBB.1.11.1.1) sandwich inserted in ORF1ab, from lineage-proposals#609 XCK Recombinant lineage of FL.1.5.1 (5' up to and including S:701) and BQ.1.2.2, from #2215 XCL Recombinant lineage of XBB (possibly XBB.1.5.68 or FY.4) from 5' up to 12468-15754, GK.2.1 onwards, Europe, from #2227