From 36e8c568292b92db808372bf21a74612212c23d1 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Wed, 13 Nov 2024 12:59:02 +0100 Subject: [PATCH] Designate MG.2-3 --- lineage_notes.txt | 2 + lineages.csv | 93 +++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 95 insertions(+) diff --git a/lineage_notes.txt b/lineage_notes.txt index 3471b630..bbc56f22 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1163,6 +1163,8 @@ KP.1 Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R, from sars-cov-2-variants/line KP.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089 KP.1.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1, S:K182N, after ORF1b:L2213F, from #2510 MG.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1.1, S:T572I, S:679N, ORF1a:V3091I, from sars-cov-2-variants/lineage-proposals#1623 +MG.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1.2, S:S31-, N:S183P, ORF1b:S2312L +MG.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1.3, S:T22N,S:N30-,S:S31-,S:F32I,S:K478T, India, from sars-cov-2-variants/lineage-proposals#2120 KP.1.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.2, S:P1162S, T2152C, from sars-cov-2-variants/lineage-proposals#1541 KP.1.1.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3, C4999T, many with S:S31del, from sars-cov-2-variants/lineage-proposals#1502 LP.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.1, S:M1229I,from sars-cov-2-variants/lineage-proposals#1591 diff --git a/lineages.csv b/lineages.csv index 15ceb2b2..d5b2538e 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2581345,3 +2581345,96 @@ USA/LA-EVTL22978/2024,NN.2 USA/LA-EVTL22841/2024,NN.2 USA/LA-EVTL22807/2024,NN.2 USA/LA-EVTL22762/2024,NN.2 +USA/UT-UPHL-240809842827/2024,MG.2 +USA/CA-SEARCH-141627/2024,MG.2 +USA/CA-SEARCH-140717/2024,MG.2 +USA/CA-SEARCH-140902/2024,MG.2 +USA/TX-HMH-M-143885/2024,MG.2 +USA/CA-CDC-QDX21752304/2024,MG.2 +USA/CA-CDPH-6000019795/2024,MG.2 +USA/GA-GPHL-0878/2024,MG.2 +Canada/BC-BCCDC-728980/2024,MG.2 +USA/NY-CDC-QDX98726411/2024,MG.2 +USA/NY-CDC-QDX98726412/2024,MG.2 +USA/CA-LACPHL-AY06966/2024,MG.2 +USA/CA-LACPHL-AY06956/2024,MG.2 +USA/NY-URMC-O9S1R188-1/2024,MG.2 +USA/NY-URMC-O8S1Q959-1/2024,MG.2 +USA/UT-UPHL-240816569657/2024,MG.2 +USA/UT-UPHL-240927772508/2024,MG.2 +USA/CA-LACPHL-AY08617/2024,MG.2 +USA/CO-CDPHE-42194590/2024,MG.2 +USA/CA-LACPHL-AY07592/2024,MG.2 +USA/CA-LACPHL-AY07638/2024,MG.2 +USA/CO-CDPHE-42084695/2024,MG.2 +France/IDF-RELAB-IPP09125/2024,MG.2 +USA/NY-PRL-240828_81G10/2024,MG.2 +USA/OH-PLMI-3C4-27224/2024,MG.2 +USA/CA-CDC-QDX20758679/2024,MG.2 +USA/CA-CDC-2-8024601/2024,MG.2 +USA/CA-SEARCH-141663/2024,MG.2 +USA/FL-CDC-QDX21358049/2024,MG.2 +USA/CA-CDC-LC1112484/2024,MG.2 +USA/NV-SNPHL-816399/2024,MG.2 +USA/CA-CDC-LC1109692/2024,MG.2 +USA/CA-LACPHL-AY07171/2024,MG.2 +USA/NY-URMC-O8S1Q204-1/2024,MG.2 +USA/NY-URMC-O9S1R225-1/2024,MG.2 +USA/NV-CDC-QDX23842904/2024,MG.2 +USA/CA-LACPHL-AY08636/2024,MG.2 +USA/WA-CDC-QDX20636692/2024,MG.2 +USA/CA-KP002489/2024,MG.2 +USA/CA-SEARCH-142022/2024,MG.2 +USA/CA-SEARCH-142019/2024,MG.2 +USA/CA-SEARCH-142023/2024,MG.2 +USA/CA-LACPHL-AY07833/2024,MG.2 +USA/WY-WYPHL-24015267/2024,MG.2 +USA/NY-PRL-240723_82C04/2024,MG.2 +USA/NE-NM_L381098098/2024,MG.2 +USA/NE-NM_L381041008/2024,MG.2 +USA/CA-LACPHL-AY08622/2024,MG.2 +USA/CA-CDC-QDX22494659/2024,MG.2 +USA/CA-SEARCH-141902/2024,MG.2 +USA/IL-RIPHL_14868_G/2024,MG.2 +USA/CA-GBW-GKPLAAAA11972/2024,MG.2 +USA/TX-PHH-24V-253G0178/2024,MG.2 +USA/NY-CDC-QDX23647462/2024,MG.2 +USA/NV-CDC-QDX23428180/2024,MG.2 +USA/CA-Stanford-191_S14/2024,MG.2 +USA/CA-LACPHL-AY07970/2024,MG.2 +Canada/AB-ABPHL-121076/2024,MG.2 +USA/CA-GBW-GKISBBBB39547/2024,MG.2 +Denmark/DCGC-689558/2024,MG.2 +USA/MI-UM-10059424060/2024,MG.2 +USA/RI_RISHL_01900/2024,MG.2 +Canada/BC-BCCDC-729019/2024,MG.2 +Canada/BC-BCCDC-736878/2024,MG.2 +Canada/BC-BCCDC-740537/2024,MG.2 +Canada/BC-BCCDC-740578/2024,MG.2 +Canada/BC-BCCDC-740437/2024,MG.2 +Canada/BC-BCCDC-740423/2024,MG.2 +Canada/BC-BCCDC-740427/2024,MG.2 +Canada/BC-BCCDC-740438/2024,MG.2 +Canada/BC-BCCDC-740576/2024,MG.2 +Canada/BC-BCCDC-740577/2024,MG.2 +USA/CA-SC-300168/2024,MG.3 +Canada/BC-BCCDC-733216/2024,MG.3 +USA/UT-UPHL-241101238674/2024,MG.3 +Germany/BE-RKI-I-1145315/2024,MG.3 +France/OCC-RELAB-HCL724000498601/2024,MG.3 +England/CLIMB-CM7Y8KRH/2024,MG.3 +USA/WA-GBW-GKISBBBD50972/2024,MG.3 +USA/WA-GBW-GKPLAAAA20712/2024,MG.3 +Scotland/CLIMB-CM7YE3SE/2024,MG.3 +USA/NY-GBW-GKPLAAAA31935/2024,MG.3 +HongKong/VB24297472/2024,MG.3 +USA/NY-GBW-GKISBBBE18777/2024,MG.3 +England/CLIMB-CM7YGSMZ/2024,MG.3 +USA/CA-LACPHL-AY08812/2024,MG.3 +USA/NY-URMC-O9S1R831-1/2024,MG.3 +Ireland/D-SVUH-FAZ98989-014/2024,MG.3 +USA/CA-CDPH-500141685/2024,MG.3 +USA/CA-Stanford-196_S12/2024,MG.3 +Sweden/U-R840827/2024,MG.3 +Japan/FR012-0609/2024,MG.3 +USA/NJ-GBW-GKISBBBD52869/2024,MG.3