From 36e3fb099782e00f74e2ea4d9843cebe5aa48b60 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Fri, 1 Sep 2023 14:41:13 +0200 Subject: [PATCH] Designate JJ.1 (XBB.1.9.2.5.1.3.1, S:L455F, ORF3a:I47V, China/Japan) with 27 seqs --- lineage_notes.txt | 1 + lineages.csv | 27 +++++++++++++++++++++++++++ pango_designation/alias_key.json | 1 + 3 files changed, 29 insertions(+) diff --git a/lineage_notes.txt b/lineage_notes.txt index 514b3401..2d665759 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2982,6 +2982,7 @@ EG.5.1.2 Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I From sars-cov-2-variants/ EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T from https://github.com/sars-cov-2-variants/lineage-proposals/issues/222 JG.1 Alias of XBB.1.9.2.5.1.3.1, S:T732I, France EG.5.1.4 Alias of XBB.1.9.2.5.1.4, ORF1b:K2557R from https://github.com/cov-lineages/pango-designation/issues/2117 +JJ.1 Alias of XBB.1.9.2.5.1.3.1, S:L455F, ORF3a:I47V, China/Japan EG.5.1.5 Alias of XBB.1.9.2.5.1.5, ORF1a:L3293I, ORF1b:T1274I, ORF1b:L2349V, Portugal EG.5.1.6 Alias of XBB.1.9.2.5.1.6, S:F157L, ORF1a:S1857L, USA from https://github.com/sars-cov-2-variants/lineage-proposals/issues/394 HV.1 Alias of XBB.1.9.2.5.1.6.1, S:L452R, USA diff --git a/lineages.csv b/lineages.csv index ee967140..0427aef0 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2462199,3 +2462199,30 @@ England/CLIMB-CM7YENNY/2023,HK.9 England/CLIMB-CM7YGF9A/2023,HK.9 England/CLIMB-CM7Y8PYI/2023,HK.9 England/CLIMB-CM7YMOKD/2023,HK.9 +Japan/PG-557386/2023,JJ.1 +Yunnan/YNCDC-2162/2023,JJ.1 +Hong_Kong/VB23108519/2023,JJ.1 +Shanghai/SCDC-718/2023,JJ.1 +Shanghai/SCDC-XG08-12185/2023,JJ.1 +Japan/PG-555880/2023,JJ.1 +Taiwan/CDC-W30998/2023,JJ.1 +Japan/PG-560780/2023,JJ.1 +Japan/TKYnat14846/2023,JJ.1 +Japan/PG-557715/2023,JJ.1 +Japan/TKYnat14786/2023,JJ.1 +Japan/PG-558758/2023,JJ.1 +Japan/PG-557482/2023,JJ.1 +Japan/PG-556969/2023,JJ.1 +Japan/PG-556970/2023,JJ.1 +Japan/PG-556971/2023,JJ.1 +Japan/PG-556972/2023,JJ.1 +Japan/PG-556974/2023,JJ.1 +Japan/PG-556975/2023,JJ.1 +Japan/PG-556992/2023,JJ.1 +Japan/PG-556979/2023,JJ.1 +Japan/PG-556993/2023,JJ.1 +Japan/PG-556995/2023,JJ.1 +Japan/PG-560046/2023,JJ.1 +Japan/PG-560048/2023,JJ.1 +Japan/PG-556973/2023,JJ.1 +Japan/PG-556994/2023,JJ.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 8dc3e0b6..7b99dfd3 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -209,6 +209,7 @@ "JG": "XBB.1.9.2.5.1.3", "JH": "XBB.1.5.3", "JH": "B.1.1.529.5.3.1.1.1.1.1.2.2", + "JJ": "XBB.1.9.2.5.1.4", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],