From 321e3e2c506637f92f1be478d81b72be4a2f6aa3 Mon Sep 17 00:00:00 2001
From: Cornelius Roemer <cornelius.roemer@gmail.com>
Date: Sun, 12 Nov 2023 12:46:48 +0100
Subject: [PATCH] Designate XCT.1 (S:S704L, from #2358) with 30 seqs

---
 lineage_notes.txt |  1 +
 lineages.csv      | 33 +++++++++++++++++++++++++++++++--
 2 files changed, 32 insertions(+), 2 deletions(-)

diff --git a/lineage_notes.txt b/lineage_notes.txt
index 93700244..a2083e97 100644
--- a/lineage_notes.txt
+++ b/lineage_notes.txt
@@ -3575,6 +3575,7 @@ XCQ	Recombinant lineage of XBB.2.3 and XBB.1.5 (breakpoint between 23123-27431),
 XCR	Recombinant lineage of GK.1.1.1 and FU.1.1.1 (breakpoint between 23674-24372), USA, from #2323
 XCS	Recombinant lineage of GK.1.9 and XBB.1.16.25 (breakpoint between 223674-25044), USA, from #2311
 XCT	Recombinant lineage of JG.4, DV.7.1, JG.4 (breakpoints at 18430-19885 and 25960-27506), Europe, from sars-cov-2-variants/lineage-proposals#811
+XCT.1	S:S704L, from #2358
 XCU	Recombinant lineage of XBC.1.7.1 and FL.23.2.1 (breakpoint 22329-22577), Philippines, from sars-cov-2-variants/lineage-proposals#935
 XCV	Recombinant lineage of XBB.1.16.19, EG.5.1.3, XBB.1.16.19 (breakpoints 9694-11749 and 22996-27064), USA/Canada, from #2210
 XCW	Recombinant lineage of XBB.2.3.20, XBB.1.16.15 (breakpoint 22996-27430), India/USA from #2260
diff --git a/lineages.csv b/lineages.csv
index 2146bad1..12b615f8 100644
--- a/lineages.csv
+++ b/lineages.csv
@@ -2473775,7 +2473775,6 @@ USA/CA-HLX-STM-P8HK648U4/2023,DV.7.1.5
 USA/CA-HLX-STM-Z6GMHNPBD/2023,DV.7.1.5
 Canada/ON-PHL-23-34041/2023,DV.7.1.5
 Canada/ON-PHL-23-30068/2023,DV.7.1.5
-Austria/AGES-AZ-1651539/2023,XCT
 Austria/AGES-1141272/2023,XCT
 USA/NC-1085-10206/2023,XCT
 Germany/ST-RKI-I-1138351/2023,XCT
@@ -2480116,7 +2480115,6 @@ Belgium/rega-47651/2023,XCT
 England/CLIMB-CM7YEKH1/2023,XCT
 Switzerland/TG-UZH-IMV-3ba6b49e/2023,XCT
 USA/NY-CDC-VSX-A357012/2023,XCT
-England/CLIMB-CM7YEGGS/2023,XCT
 Luxembourg/LNS9127578/2023,XCT
 Luxembourg/LNS5551721/2023,XCT
 Luxembourg/LNS0379582/2023,XCT
@@ -2481613,3 +2481611,34 @@ Canada/ON-PHL-23-35191/2023,HK.21
 Canada/ON-PHL-23-38513/2023,HK.21
 Canada/ON-PHL-23-38016/2023,HK.21
 Canada/ON-PHL-23-35583/2023,HK.21
+Austria/AGES-AZ-1654855/2023,XCT.1
+Germany/NW-RKI-I-1138834/2023,XCT.1
+Germany/NW-RKI-I-1138465/2023,XCT.1
+USA/CA-LACPHL-AY03422/2023,XCT.1
+Switzerland/VD-HUG-42926269/2023,XCT.1
+Austria/AGES-AZ-1651539/2023,XCT.1
+France/OCC-CHU-TLS-6004259921/2023,XCT.1
+Netherlands/LI-RIVM-132603/2023,XCT.1
+Wales/CLIMB-CM7YF1A3/2023,XCT.1
+Switzerland/BS-UHB-USB_2023_10_23_8825b8e8/2023,XCT.1
+England/CLIMB-CM7YMJQC/2023,XCT.1
+Germany/BW-RKI-I-1138857/2023,XCT.1
+England/CLIMB-CM7YEGGS/2023,XCT.1
+USA/WA-GBW-H10-018-4993/2023,XCT.1
+USA/WA-GBW-H20-346-7892/2023,XCT.1
+Spain/IB-HUSE-08924/2023,XCT.1
+Spain/IB-HUSE-08883/2023,XCT.1
+Austria/AGES-1142056/2023,XCT.1
+Spain/IB-HUSE-08932/2023,XCT.1
+Denmark/DCGC-662170/2023,XCT.1
+Denmark/DCGC-661955/2023,XCT.1
+Austria/AGES-1141893/2023,XCT.1
+Spain/IB-HUSE-08880/2023,XCT.1
+Germany/BE-RKI-I-1138928/2023,XCT.1
+Germany/BE-RKI-I-1138940/2023,XCT.1
+England/CLIMB-CM7YK7R7/2023,XCT.1
+England/CLIMB-CM7YE3F8/2023,XCT.1
+Sweden/O-2391956863/2023,XCT.1
+Spain/IB-HUSE-08871/2023,XCT.1
+Spain/IB-HUSE-08904/2023,XCT.1
+Spain/IB-HUSE-08942/2023,XCT.1