From 2f2a87fc135a9eed5e3a8a3f1d9c08cca18be0e2 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Sat, 2 Dec 2023 19:56:54 +0100 Subject: [PATCH] Designate HK.34.1 (S:K356T, Singapore) --- lineage_notes.txt | 1 + lineages.csv | 124 +++++++++++++++++++++++----------------------- 2 files changed, 63 insertions(+), 62 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index efbda723..11a59d7f 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -3155,6 +3155,7 @@ HK.31 Alias of XBB.1.9.2.5.1.1.31, ORF1a:G604S HK.32 Alias of XBB.1.9.2.5.1.1.32, S:Q14R, ORF1a:S2193F, China HK.33 Alias of XBB.1.9.2.5.1.1.33, S:L455F on C2644T branch, North America HK.34 Alias of XBB.1.9.2.5.1.1.34, S:F186S, ORF1a:V3660M, on C2644T branch, Singapore +HK.34.1 Alias of XBB.1.9.2.5.1.1.34, S:K356T, Singapore EG.5.1.2 Alias of XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I, from sars-cov-2-variants/lineage-proposals#301 EG.5.1.3 Alias of XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T, from sars-cov-2-variants/lineage-proposals#222 JG.1 Alias of XBB.1.9.2.5.1.3.1, S:T732I, France, from #2218 diff --git a/lineages.csv b/lineages.csv index 6739e6c4..d4144adb 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2502053,68 +2502053,6 @@ CHN/SH-XG2310-14770/2023,HK.32 Shanghai/SCDC-XG10-14770/2023,HK.32 CHN/SH-ZX230848/2023,HK.32 Shanghai/SCDC-ZX0848/2023,HK.32 -Singapore/R61MR14/2023,HK.34 -Singapore/R62MR14/2023,HK.34 -Singapore/R63MR21/2023,HK.34 -Singapore/R68MR167/2023,HK.34 -Singapore/R60MR14/2023,HK.34 -Singapore/R66MR106/2023,HK.34 -Singapore/R66MR85/2023,HK.34 -Singapore/R71MR169/2023,HK.34 -USA/CA-CDPH-500127309/2023,HK.34 -Israel/SMC-7115593/2023,HK.34 -Singapore/R61MR27/2023,HK.34 -Israel/SMC-7115407/2023,HK.34 -Singapore/R63MR19/2023,HK.34 -Singapore/R62MR19/2023,HK.34 -Singapore/R70MR92/2023,HK.34 -England/CLIMB-CM7Y8MSP/2023,HK.34 -Singapore/R70MR192/2023,HK.34 -Singapore/R68MR140/2023,HK.34 -Singapore/R64MR101/2023,HK.34 -Singapore/R63MR41/2023,HK.34 -Singapore/R67MR106/2023,HK.34 -Singapore/R72MR135/2023,HK.34 -Singapore/R64MR157/2023,HK.34 -Singapore/R70MR18/2023,HK.34 -Singapore/R68MR184/2023,HK.34 -Singapore/R66MR84/2023,HK.34 -Singapore/R74MR40/2023,HK.34 -Singapore/R68MR76/2023,HK.34 -Singapore/R70MR1/2023,HK.34 -Singapore/R71MR85/2023,HK.34 -Singapore/R72MR87/2023,HK.34 -Singapore/R70MR88/2023,HK.34 -Singapore/R70MR45/2023,HK.34 -Singapore/R68MR41/2023,HK.34 -USA/CA-CDPH-500126163/2023,HK.34 -Singapore/R86MR125/2023,HK.34 -Singapore/R80MR206/2023,HK.34 -Singapore/R76MR46/2023,HK.34 -Singapore/R71MR32/2023,HK.34 -Singapore/R74MR20/2023,HK.34 -Singapore/R72MR136/2023,HK.34 -USA/CA-CDPH-500127780/2023,HK.34 -Singapore/R85MR172/2023,HK.34 -Singapore/R86MR205/2023,HK.34 -Singapore/R79MR70/2023,HK.34 -Singapore/R80MR20/2023,HK.34 -Singapore/R77MR196/2023,HK.34 -Scotland/CLIMB-CM7YG7H3/2023,HK.34 -Scotland/CLIMB-CM7YJKI7/2023,HK.34 -Singapore/R86MR183/2023,HK.34 -Singapore/R79MR117/2023,HK.34 -Singapore/R79MR142/2023,HK.34 -Singapore/R85MR104/2023,HK.34 -Singapore/R85MR61/2023,HK.34 -Singapore/R77MR53/2023,HK.34 -Singapore/R78MR140/2023,HK.34 -Singapore/R86MR203/2023,HK.34 -Singapore/R77MR136/2023,HK.34 -Singapore/R86MR256/2023,HK.34 -Singapore/R86MR244/2023,HK.34 -Singapore/R86MR188/2023,HK.34 -Singapore/R79MR54/2023,HK.34 SouthKorea/KDCA_270630/2023,HK.33 SouthKorea/KDCA271961/2023,HK.33 SouthKorea/KDCA273263/2023,HK.33 @@ -2502734,3 +2502672,65 @@ England/CLIMB-CM7YE5M8/2023,FY.8.1.1 England/CLIMB-CM7YK7SM/2023,FY.8.1.1 England/CLIMB-CM7YJEZO/2023,FY.8.1.1 England/CLIMB-CM7YGUGX/2023,FY.8.1.1 +Singapore/R61MR14/2023,HK.34 +Singapore/R62MR14/2023,HK.34 +Singapore/R63MR21/2023,HK.34 +Singapore/R68MR167/2023,HK.34 +Singapore/R60MR14/2023,HK.34 +Singapore/R66MR106/2023,HK.34 +Singapore/R66MR85/2023,HK.34 +Singapore/R71MR169/2023,HK.34 +USA/CA-CDPH-500127309/2023,HK.34 +Israel/SMC-7115593/2023,HK.34 +Singapore/R61MR27/2023,HK.34 +Israel/SMC-7115407/2023,HK.34 +Singapore/R63MR19/2023,HK.34 +Singapore/R62MR19/2023,HK.34 +Singapore/R70MR92/2023,HK.34 +England/CLIMB-CM7Y8MSP/2023,HK.34 +Singapore/R70MR192/2023,HK.34 +Singapore/R68MR140/2023,HK.34 +Singapore/R64MR101/2023,HK.34 +Singapore/R63MR41/2023,HK.34 +Singapore/R67MR106/2023,HK.34 +Singapore/R72MR135/2023,HK.34 +Singapore/R64MR157/2023,HK.34 +Singapore/R70MR18/2023,HK.34 +Singapore/R68MR184/2023,HK.34 +Singapore/R66MR84/2023,HK.34 +Singapore/R74MR40/2023,HK.34 +Singapore/R68MR76/2023,HK.34 +Singapore/R70MR1/2023,HK.34 +Singapore/R71MR85/2023,HK.34.1 +Singapore/R72MR87/2023,HK.34.1 +Singapore/R70MR88/2023,HK.34.1 +Singapore/R70MR45/2023,HK.34.1 +Singapore/R68MR41/2023,HK.34.1 +USA/CA-CDPH-500126163/2023,HK.34.1 +Singapore/R86MR125/2023,HK.34.1 +Singapore/R80MR206/2023,HK.34.1 +Singapore/R76MR46/2023,HK.34.1 +Singapore/R71MR32/2023,HK.34.1 +Singapore/R74MR20/2023,HK.34.1 +Singapore/R72MR136/2023,HK.34.1 +USA/CA-CDPH-500127780/2023,HK.34.1 +Singapore/R85MR172/2023,HK.34.1 +Singapore/R86MR205/2023,HK.34.1 +Singapore/R79MR70/2023,HK.34.1 +Singapore/R80MR20/2023,HK.34.1 +Singapore/R77MR196/2023,HK.34.1 +Scotland/CLIMB-CM7YG7H3/2023,HK.34.1 +Scotland/CLIMB-CM7YJKI7/2023,HK.34.1 +Singapore/R86MR183/2023,HK.34.1 +Singapore/R79MR117/2023,HK.34.1 +Singapore/R79MR142/2023,HK.34.1 +Singapore/R85MR104/2023,HK.34.1 +Singapore/R85MR61/2023,HK.34.1 +Singapore/R77MR53/2023,HK.34.1 +Singapore/R78MR140/2023,HK.34.1 +Singapore/R86MR203/2023,HK.34.1 +Singapore/R77MR136/2023,HK.34.1 +Singapore/R86MR256/2023,HK.34.1 +Singapore/R86MR244/2023,HK.34.1 +Singapore/R86MR188/2023,HK.34.1 +Singapore/R79MR54/2023,HK.34.1