diff --git a/lineage_notes.txt b/lineage_notes.txt index fa9519ef..ab145ef3 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1272,6 +1272,7 @@ LQ.3 Alias of B.1.1.529.2.86.1.1.18.1.3, ORF1a:T1761I, Russia JN.1.18.2 Alias of B.1.1.529.2.86.1.1.18.2, S:F59S, after C4331T, T22321C, from sars-cov-2-variants/lineage-proposals#1441 LZ.1 Alias of B.1.1.529.2.86.1.1.18.2.1, S:F456L (T22930A), N:A152T, ORF1a:I740V from #2654 LZ.1.1 Alias of B.1.1.529.2.86.1.1.18.2.1.1, S:P217S, S:N1125S from #2654 +LZ.2 Alias of B.1.1.529.2.86.1.1.18.2.2, S:F456L (T22928C), ORF1a:K1226E, China JN.1.18.3 Alias of B.1.1.529.2.86.1.1.18.3, S:F456V (T22928G), from sars-cov-2-variants/lineage-proposals#1253 MA.1 Alias of B.1.1.529.2.86.1.1.18.3.1, S:R190S, S:31del, from sars-cov-2-variants/lineage-proposals#1635 JN.1.18.4 Alias of B.1.1.529.2.86.1.1.18.4, S:F456L (T22930G), ORF6:I60T, T23036C, Ghana from #2567 diff --git a/lineages.csv b/lineages.csv index dba7198f..10e699b0 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2559472,24 +2559472,6 @@ Canada/QC-L00747116001/2024,LZ.1 Canada/QC-L00744470001/2024,LZ.1 Canada/QC-L00738492001/2024,LZ.1 Canada/QC-L00744447001/2024,LZ.1 -England/CLIMB-CM7Y8189/2024,LZ.1 -USA/CO-CDPHE-41969070/2024,LZ.1 -USA/CO-CDPHE-41933798/2024,LZ.1 -HongKong/VB24136891/2024,LZ.1 -HongKong/VB24154520/2024,LZ.1 -USA/NY-SUNYQB-X9615/2024,LZ.1 -Japan/FR012-0171/2024,LZ.1 -HongKong/VB24169404/2024,LZ.1 -Japan/FR021-0435/2024,LZ.1 -Australia/VIC-VIDRL-00013881/2024,LZ.1 -Hubei/HCDC-XY5001/2024,LZ.1 -Japan/TKYnat17088/2024,LZ.1 -Taiwan/CDC-F92676/2024,LZ.1 -Taiwan/CDC-F92608/2024,LZ.1 -NewZealand/24ZA2408/2024,LZ.1 -NewZealand/24ZA2706/2024,LZ.1 -NewZealand/24ZA2917/2024,LZ.1 -NewZealand/24ZA2942/2024,LZ.1 USA/PR-CVL-024273/2024,LZ.1.1 PuertoRico/PR-CVL-024273/2024,LZ.1.1 USA/PR-CVL-024536/2024,LZ.1.1 @@ -2564939,3 +2564921,77 @@ Scotland/CLIMB-CM7YGHX5/2024,XED England/CLIMB-CM7YMJ5Q/2024,XED England/CLIMB-CM7YFQ9E/2024,XED Netherlands/ZH-RIVM-138823/2024,XED +Malaysia/MKAI-6773601/2024,LZ.2 +Malaysia/MKAK_CL_47756/2024,LZ.2 +CHN/HLJCDC-1510/2024,LZ.2 +CHN/HLJCDC-1509/2024,LZ.2 +England/CLIMB-CM7Y8189/2024,LZ.2 +HongKong/VB24226685/2024,LZ.2 +USA/WA-GBW-GKISBBBD39606/2024,LZ.2 +CHN/HFCDC-COV-2024-145/2024,LZ.2 +CHN/HFCDC-COV-2024-174/2024,LZ.2 +Netherlands/ZH-RIVM-139767/2024,LZ.2 +Hubei/HCDC-JM5820/2024,LZ.2 +CHN/HB-Jingmen-5820/2024,LZ.2 +USA/CO-CDPHE-41969070/2024,LZ.2 +USA/CO-CDPHE-41933798/2024,LZ.2 +USA/CO-CDPHE-41986165/2024,LZ.2 +CHN/YNCDC-1052/2024,LZ.2 +CHN/HLJCDC-1363/2024,LZ.2 +CHN/HLJCDC-1335/2024,LZ.2 +CHN/HLJCDC-1449/2024,LZ.2 +CHN/HLJCDC-1445/2024,LZ.2 +CHN/HLJCDC-1444/2024,LZ.2 +CHN/HLJCDC-1421/2024,LZ.2 +CHN/HLJCDC-1399/2024,LZ.2 +Hubei/HCDC-XY5001/2024,LZ.2 +Australia/VIC-VIDRL-00013881/2024,LZ.2 +Japan/FR021-0435/2024,LZ.2 +HongKong/VB24169404/2024,LZ.2 +Australia/NSW-ICPMR-54694/2024,LZ.2 +Australia/WA16277/2024,LZ.2 +USA/NY-GBW-GKISBBBC93171/2024,LZ.2 +Japan/FR012-0171/2024,LZ.2 +Spain/AS-HUCA-232454397/2024,LZ.2 +Singapore/R34MQ123/2024,LZ.2 +USA/NY-SUNYQB-X9615/2024,LZ.2 +HongKong/VB24136891/2024,LZ.2 +HongKong/VB24154520/2024,LZ.2 +Hubei/HCDC-ES5675/2024,LZ.2 +CHN/HB-Enshi-5675/2024,LZ.2 +CHN/HB-Jingzhou-6032/2024,LZ.2 +Hubei/HCDC-JZ6032/2024,LZ.2 +SouthKorea/KDCA293644/2024,LZ.2 +USA/CA-GBW-GKPLAAAA26858/2024,LZ.2 +USA/CA-GBW-GKISBBBD62164/2024,LZ.2 +USA/CA-GBW-GKISBBBD62174/2024,LZ.2 +Japan/TKYnat17088/2024,LZ.2 +Taiwan/CDC-F92676/2024,LZ.2 +Taiwan/CDC-W38572/2024,LZ.2 +Japan/FR021-0490/2024,LZ.2 +Hubei/HCDC-JZ5938/2024,LZ.2 +CHN/HB-Jingzhou-5938/2024,LZ.2 +Hubei/HCDC-WH6099/2024,LZ.2 +CHN/HB-Wuhan-6099/2024,LZ.2 +Greece/PHLnetwork_3207/2024,LZ.2 +USA/TX-UHS-UTHSA11410-P0/2024,LZ.2 +Germany/ST-RKI-I-1143805/2024,LZ.2 +USA/NY-SUNYQB-X5815645/2024,LZ.2 +USA/UT-UPHL-240628596589/2024,LZ.2 +Taiwan/CDC-F92608/2024,LZ.2 +USA/IVY-G43S47U9/2024,LZ.2 +USA/CA-CDC-LC1111215/2024,LZ.2 +USA/UT-UPHL-240802646664/2024,LZ.2 +NewZealand/24ZA2408/2024,LZ.2 +NewZealand/24ZA2706/2024,LZ.2 +NewZealand/24ZA2917/2024,LZ.2 +NewZealand/24ZA2942/2024,LZ.2 +NewZealand/24YA5738/2024,LZ.2 +CHN/HB-Jingzhou-6034/2024,LZ.2 +Hubei/HCDC-JZ6034/2024,LZ.2 +USA/CA-GBW-GKPLAAAA33657/2024,LZ.2 +USA/CA-GBW-GKISBBBD11626/2024,LZ.2 +CHN/HB-Jingzhou-6186/2024,LZ.2 +Hubei/HCDC-JZ6186/2024,LZ.2 +Hubei/HCDC-JZ6187/2024,LZ.2 +CHN/HB-Jingzhou-6187/2024,LZ.2