From 1f6b1c15215b3623b9f7c544039ba7882d349405 Mon Sep 17 00:00:00 2001
From: Cornelius Roemer <cornelius.roemer@gmail.com>
Date: Tue, 21 Nov 2023 08:49:55 +0100
Subject: [PATCH] Designate XDE (Recombinant lineage of GW.5.1 and FL.13.4
 (breakpoint at 24034-24046), Pakistan, from #2352) with 15 seqs

Resolves #2352
---
 lineage_notes.txt                |  1 +
 lineages.csv                     | 21 +++++++++++++++++++++
 pango_designation/alias_key.json |  3 ++-
 3 files changed, 24 insertions(+), 1 deletion(-)

diff --git a/lineage_notes.txt b/lineage_notes.txt
index d284bd17..d49e9e9f 100644
--- a/lineage_notes.txt
+++ b/lineage_notes.txt
@@ -3606,6 +3606,7 @@ XDA	Recombinant lineage of XBB.1.16, HN.5 (breakpoint 22102-22927), from sars-co
 XDB	Recombinant lineage of XBB.1.16.19, non-XBB.1.16/EG.5/XBB.2.3 XBB (breakpoint ~28000, depending on donor), Indonesia, from sars-cov-2-variants/lineage-proposals#969
 XDC	Recombinant lineage of HK.3, XBB.1.16 (breakpoint 22996-27506), China/Singapore, from sars-cov-2-variants/lineage-proposals#902
 XDD	Recombinant lineage of EG.5.1.1, JN.1, EG.5.1.1 (breakpoints at 6541-7842 and 25416-26270), USA/France/Spain, from sars-cov-2-variants/lineage-proposals#1024
+XDE	Recombinant lineage of GW.5.1 and FL.13.4 (breakpoint at 24034-24046), Pakistan, from #2352
 *A.2.1	Withdrawn: Lineage with sequences predominantly from Panama
 *A.8	Withdrawn: Indian lineage merged with A.9
 *A.10	Withdrawn: Spanish lineage reassigned to A.5
diff --git a/lineages.csv b/lineages.csv
index d20c35d5..770b1d23 100644
--- a/lineages.csv
+++ b/lineages.csv
@@ -2482818,3 +2482818,24 @@ CHN/HB-Xiaogan-3103/2023,HK.8.1
 Hubei/HCDC-XG3103/2023,HK.8.1
 CHN/HB-Xiaogan-3347/2023,HK.8.1
 Hubei/HCDC-XG3347/2023,HK.8.1
+Pakistan/NIH-B162-S9/2023,XDE
+Pakistan/NIH-B163-S10/2023,XDE
+Pakistan/NIH-AHF-S31/2023,XDE
+Pakistan/NIH-AHF-S29/2023,XDE
+Pakistan/NIH-AHF-S27/2023,XDE
+Pakistan/NIH-B162-S5/2023,XDE
+Pakistan/NIH-B162-S8/2023,XDE
+Pakistan/NIH-B162-S11/2023,XDE
+Australia/NSW-ICPMR-49797/2023,XDE
+Australia/VIC-VIDRL-00012297/2023,XDE
+Austria/AGES-AZ-1660853/2023,XDE
+Austria/AGES-AZ-1661254/2023,XDE
+France/ARA-HCL-723001324201/2023,XDE
+France/BFC-IPP23570/2023,XDE
+USA/NJ-PHEL-V23017539/2023,XDE
+USA/NJ-CDC-VSX-A357385/2023,XDE
+USA/NJ-PHEL-V017732/2023,XDE
+USA/NJ-PHEL-V23017732/2023,XDE
+USA/NJ-CDC-QDX86168697/2023,XDE
+USA/NJ-CDC-QDX86356389/2023,XDE
+USA/NY-PRL-231103_83D02/2023,XDE
diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json
index 658a89d8..66505c07 100644
--- a/pango_designation/alias_key.json
+++ b/pango_designation/alias_key.json
@@ -319,6 +319,7 @@
     "XDA": ["XBB.1.16","HN.5"],
     "XDB": ["XBB.1.16.19","XBB"],
     "XDC": ["HK.3","XBB.1.16"],
-    "XDD": ["EG.5.1.1","JN.1","EG.5.1.1"]
+    "XDD": ["EG.5.1.1","JN.1","EG.5.1.1"],
+    "XDE": ["GW.5.1","FL.13.4"]
 }