diff --git a/lineage_notes.txt b/lineage_notes.txt index bf684754..a85f729e 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2511,6 +2511,7 @@ XBB.1.8 Denmark, S:186insSGG, C3241T XBB.1.9 ORF1a:G1819S, ORF1a:T4175I XBB.1.9.1 S:F486P (after C11956T), Indonesia/Singapore/Malaysia/England XBB.1.9.2 S:F486P (after 27507C, 16878T), Indonesia/Singapore +EG.1 Alias of XBB.1.9.2.1, S:Q613H on N:L219F branch, from https://github.com/jmcbroome/auto-pango-designation/pull/193 XBB.1.10 USA/Japan, S:A852V, S:R403K XBB.1.11 Indonesia/Malaysia/Singapore/US, C13968A and G16377A XBB.1.11.1 Indonesia/Malaysia/Singapore, S:S486P diff --git a/lineages.csv b/lineages.csv index 450108a6..24ae1ad3 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2142694,28 +2142694,6 @@ Denmark/DCGC-640090/2023,XBB.1.9.2 Denmark/DCGC-640081/2023,XBB.1.9.2 Malaysia/IMR_LF02144/2023,XBB.1.9.2 England/BRBR-326A78B9/2023,XBB.1.9.2 -Portugal/PT45514/2023,XBB.1.9.2 -Portugal/PT45516/2023,XBB.1.9.2 -Israel/SMC-7111429/2023,XBB.1.9.2 -Australia/NSW-ICPMR-41622/2023,XBB.1.9.2 -Australia/NSW-ICPMR-41621/2023,XBB.1.9.2 -Germany/SN-RKI-I-1094118/2023,XBB.1.9.2 -Luxembourg/LNS0024400/2023,XBB.1.9.2 -Germany/RP-RKI-I-1087339/2023,XBB.1.9.2 -Luxembourg/LNS2207496/2023,XBB.1.9.2 -Austria/MUIV-1152/2023,XBB.1.9.2 -Australia/NSW-ICPMR-41144/2023,XBB.1.9.2 -England/PHEC-YY87PXU/2023,XBB.1.9.2 -Indonesia/JK-NIHRD-WGS-23-00028/2023,XBB.1.9.2 -Denmark/DCGC-638441/2023,XBB.1.9.2 -USA/CA-GBW-H20-279-6600/2023,XBB.1.9.2 -Scotland/SCOT-23500/2023,XBB.1.9.2 -Austria/MUIV-1151/2023,XBB.1.9.2 -USA/CA-GBW-H10-011-1429/2023,XBB.1.9.2 -Austria/MUIV-1216/2023,XBB.1.9.2 -Austria/LB-R00122-S219/2023,XBB.1.9.2 -Austria/LB-R00122-S238/2023,XBB.1.9.2 -Austria/Medilab_1624/2023,XBB.1.9.2 England/PHEC-YY8ZPSO/2022,XBB.1.9.1 SouthKorea/KDCA185492/2022,XBB.1.9.1 Denmark/DCGC-634713/2022,XBB.1.9.1 @@ -2197570,7 +2197548,6 @@ USA/FL-CDC-QDX44996014/2022,ED.2 USA/WA-PHL-031579/2022,ED.2 USA/TX-ASC-210964893/2023,ED.2 USA/NY-SUNYQB-X4310/2022,ED.2 -strain,ED.3 USA/NY-URMC-C342-1/2022,ED.3 USA/CA-HLX-STM-XGNHFQQ92/2022,ED.3 USA/GA-CDC-STM-5EGCFBZUN/2022,ED.3 @@ -2205534,4 +2205511,115 @@ Canada/QC-L00577179001/2023,XBB.1.15 USA/FL-ASC-210995690/2023,XBB.1.15 USA/CA-CCPHL-4133/2022,XBB.1.15 USA/CA-HLX-STM-TCDGTZKXY/2022,XBB.1.15 +strain,EG.1 +Indonesia/JK-NIHRD-WGS-23-00028/2023,EG.1 +Australia/NSW-ICPMR-41144/2023,EG.1 +Israel/SMC-7111808/2023,EG.1 +Luxembourg/LNS2545276/2023,EG.1 +Spain/VC-CVA_ALIC-116758/2023,EG.1 +Netherlands/NH-AUMC-000470/2023,EG.1 +Singapore/R12MR19/2023,EG.1 +Belgium/UGent-186/2023,EG.1 +Israel/SMC-7112033/2023,EG.1 +Australia/ACT10454/2023,EG.1 +Luxembourg/LNS5320227/2023,EG.1 +Portugal/PT45514/2023,EG.1 +Portugal/PT45516/2023,EG.1 +Israel/SMC-7111429/2023,EG.1 +Australia/NSW-ICPMR-41622/2023,EG.1 +Luxembourg/LNS9575335/2023,EG.1 +Germany/SN-RKI-I-1094118/2023,EG.1 +Luxembourg/LNS0024400/2023,EG.1 +Germany/RP-RKI-I-1087339/2023,EG.1 +Singapore/R8MR16/2023,EG.1 +France/ARA-HCL723000227001/2023,EG.1 +Luxembourg/LNS2207496/2023,EG.1 +Germany/NW-RKI-I-1103756/2023,EG.1 +Australia/NSW-ICPMR-41621/2023,EG.1 +Portugal/INSA-PT45825/2023,EG.1 +Portugal/INSA-PT45658/2023,EG.1 +Israel/SMC-7112031/2023,EG.1 +Germany/BW-RKI-I-1096167/2023,EG.1 +Australia/NSW-NSWHP-41878/2023,EG.1 +Australia/NSW-NSWHP-41889/2023,EG.1 +Australia/NSW-NSWHP-41890/2023,EG.1 +Sweden/SUS0020628/2023,EG.1 +Denmark/DCGC-638441/2023,EG.1 +Denmark/DCGC-640971/2023,EG.1 +France/GES-IPP02517/2023,EG.1 +Austria/MUIV-1152/2023,EG.1 +Germany/BY-RKI-I-1103137/2023,EG.1 +USA/CA-GBW-H10-010-6994/2023,EG.1 +USA/CA-GBW-H20-270-8037/2023,EG.1 +England/PHEC-YY87PXU/2023,EG.1 +Luxembourg/LNS6737406/2023,EG.1 +Belgium/CHUNamur1445956565/2023,EG.1 +Belgium/CHUNamur1446300365/2023,EG.1 +Belgium/CHUNamur1447032765/2023,EG.1 +Denmark/DCGC-641291/2023,EG.1 +Italy/EMR_AUSLRomagna_C009-26/2023,EG.1 +Sweden/SUS0020608/2023,EG.1 +Sweden/SUS0020521/2023,EG.1 +Sweden/SUS0020582/2023,EG.1 +Sweden/PEP249988/2023,EG.1 +Australia/NSW-ICPMR-41763/2023,EG.1 +Australia/NSW-ICPMR-41784/2023,EG.1 +Australia/NSW-NSWHP-41997/2023,EG.1 +Australia/ACT10502/2023,EG.1 +Australia/NSW-ICPMR-41761/2023,EG.1 +Australia/NSW-NSWHP-41992/2023,EG.1 +Australia/NSW-ICPMR-41758/2023,EG.1 +Australia/NSW-ICPMR-41779/2023,EG.1 +Australia/NSW-NSWHP-41812/2023,EG.1 +Australia/NSW-ICPMR-41769/2023,EG.1 +Australia/SA521157/2023,EG.1 +USA/CA-GBW-H20-279-6600/2023,EG.1 +Scotland/SCOT-23500/2023,EG.1 +Austria/MUIV-1151/2023,EG.1 +Canada/BC-BCCDC-585397/2023,EG.1 +SouthKorea/KDCA210404/2023,EG.1 +USA/CA-GBW-H10-011-1429/2023,EG.1 +Israel/SMC-7112055/2023,EG.1 +Australia/SA519512/2023,EG.1 +Israel/SMC-7111640/2023,EG.1 +Germany/NW-RKI-I-1100600/2023,EG.1 +Germany/HH-RKI-I-1097468/2023,EG.1 +Germany/NW-RKI-I-1097216/2023,EG.1 +Austria/LB-R00123-S364/2023,EG.1 +Austria/LB-R00123-S198/2023,EG.1 +Austria/LB-R00123-S120/2023,EG.1 +Austria/AGES-1108880/2023,EG.1 +Austria/LB-R00124-S086/2023,EG.1 +Austria/LB-R00124-S176/2023,EG.1 +Austria/LB-R00124-S016/2023,EG.1 +Austria/LB-R00124-S235/2023,EG.1 +Austria/LB-R00123-S064/2023,EG.1 +Austria/LB-R00124-S019/2023,EG.1 +Austria/LB-R00124-S089/2023,EG.1 +Austria/AGES-1108079/2023,EG.1 +Austria/AGES-1108738/2023,EG.1 +Austria/AGES-1109894/2023,EG.1 +Austria/MUIV-1216/2023,EG.1 +Austria/LB-R00122-S219/2023,EG.1 +Austria/LB-R00123-S300/2023,EG.1 +Austria/LB-R00123-S303/2023,EG.1 +Austria/LB-R00123-S266/2023,EG.1 +Austria/LB-R00123-S248/2023,EG.1 +Austria/LB-R00123-S006/2023,EG.1 +Austria/AGES-1107881/2023,EG.1 +Austria/LB-R00123-S325/2023,EG.1 +Austria/LB-R00123-S178/2023,EG.1 +Austria/LB-R00122-S238/2023,EG.1 +Austria/AGES-1108600/2023,EG.1 +Austria/AGES-1107917/2023,EG.1 +Austria/AGES-1107848/2023,EG.1 +Austria/LB-R00123-S326/2023,EG.1 +Austria/AGES-1108562/2023,EG.1 +Austria/AGES-1108550/2023,EG.1 +Austria/AGES-1108573/2023,EG.1 +Austria/AGES-1106611/2023,EG.1 +Austria/Medilab_1624/2023,EG.1 +Austria/LB-R00124-S028/2023,EG.1 +Austria/AGES-1105628/2023,EG.1 +Austria/AGES-1108712/2023,EG.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index ee325bae..978a6044 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -114,6 +114,7 @@ "ED": "B.1.1.529.5.3.1.1.1.1.1.1.18", "EE": "B.1.1.529.5.3.1.1.1.1.1.1.4", "EF": "B.1.1.529.5.3.1.1.1.1.1.1.13", + "EG": "XBB.1.9.2", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],