From 1833d547a3d459d6920ee0abf8e90df765615198 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Tue, 5 Sep 2023 21:45:49 +0200 Subject: [PATCH] Designate XCM (recombinant of XBB.2.3 and DV.7.1 (breakpoint between 22017-22031), Spain/Italy, from sars-cov-2-variants/lineage-proposals#674) Resolves sars-cov-2-variants/lineage-proposals#674 --- lineage_notes.txt | 1 + lineages.csv | 5 +++++ pango_designation/alias_key.json | 3 ++- 3 files changed, 8 insertions(+), 1 deletion(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index 1f138ced..41a1199f 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -3344,6 +3344,7 @@ XCH.1 S:T573I XCJ Recombinant lineage of GM.2 with a little FP.1 (XBB.1.11.1.1) sandwich inserted in ORF1ab, from lineage-proposals#609 XCK Recombinant lineage of FL.1.5.1 (5' up to and including S:701) and BQ.1.2.2, from #2215 XCL Recombinant lineage of XBB (possibly XBB.1.5.68 or FY.4) from 5' up to 12468-15754, GK.2.1 onwards, Europe, from #2227 +XCM Recombinant lineage of XBB.2.3 and DV.7.1 (breakpoint between 22017-22031), Spain/Italy, from sars-cov-2-variants/lineage-proposals#674 *A.2.1 Withdrawn: Lineage with sequences predominantly from Panama *A.8 Withdrawn: Indian lineage merged with A.9 *A.10 Withdrawn: Spanish lineage reassigned to A.5 diff --git a/lineages.csv b/lineages.csv index d5112814..8ecdd8b4 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2462500,3 +2462500,8 @@ Sweden/Y-261733291192/2023,BA.2.86.1 Sweden/U-M988749/2023,BA.2.86.1 France/GES-IPP17379/2023,BA.2.86.1 France/COR-HCL-723000998801/2023,BA.2.86.1 +Spain/IB-HUSE-08555/2023,XCM +Spain/CL-42838/2023,XCM +Luxembourg/LNS0479820/2023,XCM +Italy/VEN-IZSVe-23RS8193-1_VI/2023,XCM +Italy/LOM_ASSTMonza_670352/2023,XCM diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 7c75a44e..f8548d42 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -290,6 +290,7 @@ "XCH": ["GK.1.3","XBB.1.9*","GK.1.3"], "XCJ": ["GM.2","FP.1","GM.2"], "XCK": ["FL.1.5.1","BQ.1.2.2"], - "XCL": ["XBB*","GK.2.1"] + "XCL": ["XBB*","GK.2.1"], + "XCM": ["XBB.2.3","DV.7.1"] }