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Final Package Has Additional Constraints Not Specified in meta.yaml #5002

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srilman opened this issue Sep 14, 2023 · 1 comment
Closed
2 tasks done

Final Package Has Additional Constraints Not Specified in meta.yaml #5002

srilman opened this issue Sep 14, 2023 · 1 comment
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source::community catch-all for issues filed by community members stale::closed [bot] closed after being marked as stale stale [bot] marked as stale due to inactivity type::bug describes erroneous operation, use severity::* to classify the type

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@srilman
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srilman commented Sep 14, 2023

Checklist

  • I added a descriptive title
  • I searched open reports and couldn't find a duplicate

What happened?

I have a conda package I build using conda-build, where I specify the following dependencies in our meta.yaml file (somewhat simplified):

requirements:
  build:
    - {{ compiler('c') }}
    - {{ compiler('cxx') }}

  host:
    - python
    - setuptools <63
    - numpy >=1.18,<1.24
    - fsspec >=2021.09
    - boost-cpp =1.82
    - libcurl
    - hdf5 >=1.10.*,<1.13.0a0=*mpi_mpich_*
    - h5py
    - mpich >=3.3,<4.0.0a0=h*
    - mpi4py

  run:
    - python
    - {{ pin_compatible('numpy') }}
    - fsspec >=2021.09
    - libcurl
    - mpich >=3.3,<4.0.0a0=h*
    - mpi4py

But the output package has the following dependency version constraints (for Python 3.10 and Linux x86):

fsspec >=2021.09
hdf5 >=1.12.1,<1.12.2.0a0 mpi_mpich_*
libcurl >=8.2.1,<9.0a0
libgcc-ng >=12
libstdcxx-ng >=12
mpi4py
mpich >=3.3,<4.0.0a0 h*
mpich >=3.4.3,<5.0a0
numpy >=1.23.5,<2.0a0
python >=3.10,<3.11.0a0
python_abi 3.10.* *_cp310

There are 3 inconsistencies between the specification and actual constraints:

  • libcurl is unconstrained in meta.yaml but is constrained to >=8.2.1,<9.0a0 in the final output
  • mpich is constrained twice in the final output, where the second constraint is invalid
  • numpy is incorrectly constrained to >=1.23.5,<2.0a0 in the final output but should be >=1.18,<1.24

Any ideas what might be causing these issues?

Conda Info

No response

Conda Config

==> /Users/****/mambaforge/.condarc <==
channels:
  - conda-forge

==> /Users/****/.condarc <==
auto_activate_base: False
changeps1: False
aggressive_update_packages:
  - nodefaults
remote_max_retries: 5
channels:
  - conda-forge

==> cmd_line <==
debug: False
json: False

Conda list

# packages in environment at /Users/****/mambaforge:
#
# Name                    Version                   Build  Channel
beautifulsoup4            4.12.2             pyha770c72_0    conda-forge
boltons                   23.0.0             pyhd8ed1ab_0    conda-forge
brotlipy                  0.7.0           py310h8e9501a_1005    conda-forge
bzip2                     1.0.8                h3422bc3_4    conda-forge
c-ares                    1.18.1               h3422bc3_0    conda-forge
ca-certificates           2022.12.7            h4653dfc_0    conda-forge
cctools                   973.0.1             hd1ac623_14    conda-forge
cctools_osx-arm64         973.0.1             h2a25c60_14    conda-forge
certifi                   2022.12.7          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1          py310h2399d43_3    conda-forge
cfgv                      3.3.1              pyhd8ed1ab_0    conda-forge
chardet                   5.2.0           py310hbe9552e_0    conda-forge
charset-normalizer        2.1.1              pyhd8ed1ab_0    conda-forge
click                     8.1.7           unix_pyh707e725_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
conda                     23.7.3          py310hbe9552e_0    conda-forge
conda-build               3.26.1          py310hbe9552e_0    conda-forge
conda-index               0.2.3              pyhd8ed1ab_0    conda-forge
conda-package-handling    2.0.2              pyh38be061_0    conda-forge
conda-package-streaming   0.7.0              pyhd8ed1ab_1    conda-forge
conda-tree                1.1.0              pyhd8ed1ab_0    conda-forge
cryptography              39.0.2          py310hfc83b78_0    conda-forge
distlib                   0.3.6              pyhd8ed1ab_0    conda-forge
filelock                  3.9.0              pyhd8ed1ab_0    conda-forge
fmt                       9.1.0                hffc8910_0    conda-forge
glob2                     0.7                        py_0    conda-forge
icu                       70.1                 h6b3803e_0    conda-forge
identify                  2.5.20             pyhd8ed1ab_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
importlib-metadata        6.0.0              pyha770c72_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
jsonpatch                 1.32               pyhd8ed1ab_0    conda-forge
jsonpointer               2.0                        py_0    conda-forge
krb5                      1.20.1               h69eda48_0    conda-forge
ld64                      609                 h89fa09d_14    conda-forge
ld64_osx-arm64            609                 hc4dc95b_14    conda-forge
libarchive                3.6.2                h83f22c9_0    conda-forge
libcurl                   8.1.2                h912dcd9_0    conda-forge
libcxx                    15.0.7               h75e25f2_0    conda-forge
libedit                   3.1.20191231         hc8eb9b7_2    conda-forge
libev                     4.33                 h642e427_1    conda-forge
libffi                    3.4.2                h3422bc3_5    conda-forge
libiconv                  1.17                 he4db4b2_0    conda-forge
liblief                   0.12.3               hb7217d7_0    conda-forge
libllvm15                 15.0.7               h62b9111_1    conda-forge
libmamba                  1.4.9                h4fa9c85_0    conda-forge
libmambapy                1.4.9           py310hb7070d9_0    conda-forge
libnghttp2                1.52.0               hae82a92_0    conda-forge
libsolv                   0.7.24               ha614eb4_1    conda-forge
libsqlite                 3.40.0               h76d750c_0    conda-forge
libssh2                   1.10.0               h7a5bd25_3    conda-forge
libxml2                   2.10.3               h87b0503_0    conda-forge
libzlib                   1.2.13               h03a7124_4    conda-forge
lz4-c                     1.9.4                hb7217d7_0    conda-forge
lzo                       2.10              h642e427_1000    conda-forge
mamba                     1.4.9           py310ha5d4528_0    conda-forge
markupsafe                2.1.3           py310h2aa6e3c_0    conda-forge
more-itertools            10.1.0             pyhd8ed1ab_0    conda-forge
ncurses                   6.3                  h07bb92c_1    conda-forge
networkx                  3.0                pyhd8ed1ab_0    conda-forge
nodeenv                   1.7.0              pyhd8ed1ab_0    conda-forge
openssl                   3.1.1                h53f4e23_1    conda-forge
packaging                 23.1               pyhd8ed1ab_0    conda-forge
patch                     2.7.6             h27ca646_1002    conda-forge
pip                       23.1.2             pyhd8ed1ab_0    conda-forge
pkginfo                   1.9.6              pyhd8ed1ab_0    conda-forge
platformdirs              3.1.1              pyhd8ed1ab_0    conda-forge
pluggy                    1.0.0              pyhd8ed1ab_5    conda-forge
pre-commit                3.0.4           py310hbe9552e_0    conda-forge
psutil                    5.9.5           py310h8e9501a_0    conda-forge
py-lief                   0.12.3          py310h0f1eb42_0    conda-forge
pybind11-abi              4                    hd8ed1ab_3    conda-forge
pycosat                   0.6.4           py310h8e9501a_1    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pyopenssl                 23.0.0             pyhd8ed1ab_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
python                    3.10.9          h3ba56d0_0_cpython    conda-forge
python-libarchive-c       5.0             py310hbe9552e_1    conda-forge
python_abi                3.10                    3_cp310    conda-forge
pytz                      2023.3.post1       pyhd8ed1ab_0    conda-forge
pyyaml                    6.0             py310h8e9501a_5    conda-forge
readline                  8.1.2                h46ed386_0    conda-forge
reproc                    14.2.4               h1a8c8d9_0    conda-forge
reproc-cpp                14.2.4               hb7217d7_0    conda-forge
requests                  2.28.2             pyhd8ed1ab_0    conda-forge
ripgrep                   13.0.0               h65448a5_2    conda-forge
ruamel.yaml               0.17.21         py310h8e9501a_3    conda-forge
ruamel.yaml.clib          0.2.7           py310h8e9501a_1    conda-forge
setuptools                65.6.3             pyhd8ed1ab_0    conda-forge
sigtool                   0.1.3                h44b9a77_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
soupsieve                 2.5                pyhd8ed1ab_1    conda-forge
tapi                      1100.0.11            he4954df_0    conda-forge
tk                        8.6.12               he1e0b03_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
toolz                     0.12.0             pyhd8ed1ab_0    conda-forge
tqdm                      4.65.0             pyhd8ed1ab_1    conda-forge
typing-extensions         4.5.0                hd8ed1ab_0    conda-forge
typing_extensions         4.5.0              pyha770c72_0    conda-forge
tzdata                    2022g                h191b570_0    conda-forge
ukkonen                   1.0.1           py310h2887b22_3    conda-forge
urllib3                   1.26.15            pyhd8ed1ab_0    conda-forge
virtualenv                20.21.0            pyhd8ed1ab_0    conda-forge
wheel                     0.38.4             pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h57fd34a_0    conda-forge
yaml                      0.2.5                h3422bc3_2    conda-forge
yaml-cpp                  0.7.0                hb7217d7_2    conda-forge
zipp                      3.15.0             pyhd8ed1ab_0    conda-forge
zstandard                 0.19.0          py310had9512b_1    conda-forge
zstd                      1.5.2                hf913c23_6    conda-forge

Additional Context

I build this package for 3 Python versions (3.8, 3.9, 3.10) and a couple of environments, but the issue appears in all builds. I'm generally happy to modify the dependency constraints around, but would like to confirm if this is a bug or expected behavior first.

@srilman srilman added the type::bug describes erroneous operation, use severity::* to classify the type label Sep 14, 2023
@github-project-automation github-project-automation bot moved this to 🆕 New in 🧭 Planning Sep 14, 2023
@dholth dholth added the source::community catch-all for issues filed by community members label Sep 26, 2023
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Hi there, thank you for your contribution!

This issue has been automatically marked as stale because it has not had recent activity. It will be closed automatically if no further activity occurs.

If you would like this issue to remain open please:

  1. Verify that you can still reproduce the issue at hand
  2. Comment that the issue is still reproducible and include:
    - What OS and version you reproduced the issue on
    - What steps you followed to reproduce the issue

NOTE: If this issue was closed prematurely, please leave a comment.

Thanks!

@github-actions github-actions bot added the stale [bot] marked as stale due to inactivity label Sep 26, 2024
@github-actions github-actions bot added the stale::closed [bot] closed after being marked as stale label Oct 26, 2024
@github-actions github-actions bot closed this as not planned Won't fix, can't repro, duplicate, stale Oct 26, 2024
@github-project-automation github-project-automation bot moved this from 🆕 New to 🏁 Done in 🧭 Planning Oct 26, 2024
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Labels
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