HuBMAP metadata documentation and submission specifications
- AF (Autofluorescence)
- Antibody-based MxIF (Multiplexed Immunofluorescence)
- ATACseq
- Specification and submission tsv for scATAC seq
- Specification and submission tsv for bulkATACseq
- Contacts: For bulk ATACseq, snATACseq or SNARE-ATACseq, contact Blue Lake. For sciATACseq, contact Dana Jackson
- CODEX.
- IMC (Imaging Mass Cytometry)
- MALDI-IMS (neg and pos modes - Matrix Assisted Laser Desorption Ionization Imaging Mass Spectrometry)
- PAS (histological stain)
- RNAseq
- Specification and submission tsv for scRNAseq
- Specification and submission tsv for bulkRNAseq
- Contacts: For 10X RNAseq and snRNAseq, contact Stephanie Nevins. For SNARE-RNAseq, contact Blue Lake. For sciRNAseq, contact Dana Jackson.
- SeqFISH
- LC-MS
- WGS