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Implement automatic 3d segmentation #43

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constantinpape opened this issue Jun 13, 2023 · 0 comments · Fixed by #48
Closed

Implement automatic 3d segmentation #43

constantinpape opened this issue Jun 13, 2023 · 0 comments · Fixed by #48

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@constantinpape
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  • Begin in start slice (default: middle)
  • Auto segment it (From embeddings)
  • Project to upper slices
    • Auto segment from embeddings, use projections to this slide as "seed masks" (make sure ids stay consistent)
    • Go to next upper, repeat until volume is done
  • Same procedure for the lower slices
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