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To do features #1

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3 of 10 tasks
ArthurDeclercq opened this issue Aug 30, 2024 · 2 comments
Open
3 of 10 tasks

To do features #1

ArthurDeclercq opened this issue Aug 30, 2024 · 2 comments

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@ArthurDeclercq
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ArthurDeclercq commented Aug 30, 2024 •
edited by jaspervdh
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  • Write simple input that takes tsv or csv file with: peptidoform, spectrum_id, precursor_mz and write to Peptidoforms
  • Write a function that takes a peptidoform removes modifications and generates potential other candidates
  • Read and process spectrum files with a new class (mgf and mzml) mayeb .d
  • Generate alternative proteoforms, given a certain set of fragment ions (isobaric candidates)
  • Give the (un)certainties for identifications based on the fact of certain peaks who are found or not
  • binary search
  • Modification evidence
  • Double mod
  • Isotopes
  • Multiple charges on modifications
@jaspervdh
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parse csv files: 9e648a2

@jaspervdh
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binary search: db285ed

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@ArthurDeclercq @jaspervdh