moFF Release 1.0 'Alderaan'

Apex module works in multi-process improving a lot of the speed up. This has been well tested on thermo raw file using our txic program based on our unthermo library. The testing using mzML file is still undergoing.

Seamless integration with the report produced by PeptideShaker.

• Now exporting your result in PeptideShaker using the default PSM export is possible to use directly the exported csv file into moFF.

A new way to input your data :

• for the entire workflow (mbr+apex moff_all.py) you can use --inputtsv along with --inputraw to specify the list input and raw files. (e.g --inputtsv file1.txt file2.txt --rawlist file1.raw file2.raw).
  For the *apex module you can also using --inputtsv along with --inputraw but it takes only pair of files and not a list.
• The old input commands using --inputF and --raw_repo is stil working for entire workflow

A docker file for moFF has been also added to the repository and tested